SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7813

Length: 1349 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7813

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fructokinase [Arabidopsis thaliana] sp\|Q9LNE3.1\|SCRK2_ARATH RecName: Full=Probable fructokinase-2 gb\|AAF80126.1\|AC024174_8 Contains similarity to a fructokinase from Solanum tuberosum gi\|585973 and is a member of the pfkB carbohydrate kinase family PF\|002	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Fructokinase	-	-	2.975e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Fructokinase.	EC:2.7.1.4	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Fructose and mannose metabolism	00051	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g06020; At1g06030; At1g50390; At1g66430; At2g31390; At3g59480; At4g10260; At5g51830; F14I3.3; F24G24.60; F28G11.11; FKA1; FKI; FKII; FRK; FRK1; FRK2; Frk1; GSVIVT00001970001; GSVIVT00010603001; GSVIVT00022394001; GSVIVT00026311001; GSVIVT00031957001; N

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	ribokinase activity	GO:0004747	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	fructokinase activity	GO:0008865	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G06030.1	pfkB-like carbohydrate kinase family protein chr1:1826880-1828130 FORWARD LENGTH=329	67%
RefSeq	Arabidopsis thaliana	NP_172093.1	fructokinase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002305200.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRB5

Fln msg:

Fln protein: MTTVDHAGETAALDVDSAPNNGNLGKSQEDSTELNEGGKLTSKDLIVCFGEMLIDFVPSESGVSLAQASGFKKAPGGAPANVAVAIAKFGGSSAFIGKVGEDEFGFQLVDILKENGVLDRGIRYDKNARTALAFVTLRHDGEREFMFYRNPSADMLLTKSELDVDLLQQASIFHYGSISLISEPCRSAHLEAMKIAKSAGAFLSYDPNLRLPLWPSPEEARKGIFSIWDKADLIKINEEEAAFLTNGADYEKDEVVMSLWHPGLKLLLLTEGEKGCRYYTKDFRGRVDSTPVKTIDTTGAGDAYVGALLTELVKDMSLIQNEEGLRKVLRLANFVGAITTTEKGAIPALPDRDVALSLLNKVDTL*

Protein Length: 367

Fln nts: AATGTCTCTTACAGATTTTGCTTCTTTTATTTTCCTGTATTCTCAGATATCTCTGGCTTTCCTGCTGGTGATTTTGTAAAATCTCATCCACCAGGCTCTTCTGGTTATTTGATTACAGTATCGAA_-_ATGACAACAGTGGATCATGCAGGAGAAACTGCAGCTTTGGACGTTGATTCAGCTCCGAACAATGGAAATCTTGGGAAATCTCAGGAAGATAGTACAGAGTTGAATGAAGGAGGCAAGCTCACCTCCAAAGACTTGATTGTTTGCTTCGGGGAGATGCTCATTGACTTTGTCCCATCAGAGTCAGGGGTTTCGTTAGCACAGGCATCAGGTTTTAAAAAGGCCCCAGGTGGTGCACCTGCAAATGTTGCTGTAGCAATAGCTAAGTTTGGCGGGTCCTCAGCTTTCATTGGAAAGGTTGGTGAAGATGAATTTGGGTTTCAATTGGTTGACATTTTGAAGGAGAACGGTGTGCTGGATCGAGGCATACGCTATGATAAGAATGCTAGAACAGCGCTTGCTTTTGTTACATTGCGTCATGATGGTGAACGAGAGTTCATGTTTTATCGTAATCCCAGTGCTGACATGTTACTAACCAAGTCTGAACTTGATGTAGACTTACTTCAACAGGCCAGCATTTTTCATTATGGATCAATAAGTCTGATCTCAGAACCATGCAGATCAGCGCATCTTGAGGCTATGAAGATTGCAAAAAGCGCTGGTGCTTTTTTATCTTACGATCCGAATCTTAGATTGCCACTGTGGCCATCTCCCGAGGAAGCTCGTAAAGGAATTTTCAGCATCTGGGATAAGGCAGACCTGATTAAGATCAATGAAGAAGAAGCAGCATTCCTTACGAATGGAGCAGATTATGAAAAGGATGAGGTAGTCATGTCACTCTGGCATCCCGGACTGAAGTTATTGCTCCTCACTGAGGGGGAAAAGGGTTGCAGATATTATACCAAGGATTTTCGAGGGAGGGTTGATAGCACACCAGTCAAAACAATTGATACAACAGGTGCTGGTGATGCATATGTTGGGGCACTTCTTACTGAACTTGTTAAGGACATGTCATTGATTCAGAATGAAGAAGGACTAAGGAAAGTATTGAGACTTGCCAATTTTGTGGGTGCCATAACAACAACAGAAAAGGGTGCCATTCCCGCTTTGCCTGATAGAGATGTTGCATTGAGCCTCTTAAATAAAGTTGATACTTTGTAG___TTTTTTTAAACAATTGAGATACATCCAAACTTAAAATTTCATTGTGAATCCATGTAAGATAGAATAGATAGATGTTTCTAGAGATTGCATTTTATGAAATATGTTGAACTCAAAAGTATCTTATTG

Fln Alignment:

Contig7813___TSKDLIVCFGEMLIDFVPSESGVSLAQASGFKKXXXXXXXXXXXXXXKFGGSSAFIGKVGEDEFGFQLVDILKENGVLDRGIRYDKNARTALAFVTLRHDGEREFMFYRNPSADMLLTKSELDVDLLQQASIFHYGSISLISEPCRSAHLEAMKIAKSAGAFLSYDPNLRLPLWPSPEEARKGIFSIWDKADLIKINEEEAAFLTNGADYEKDEVVMSLWHPXXXXXXXXXXXXXCRYYTKDFRGRVDSTPVKTIDTTGAGDAYVGALLTELVKDMSLIQNEEGLRKVLRLANFVGAITTTEKGAIPALPDRDVALSLLNKV
C0PRB5______________TEKSLVVCFGEMLIDFVPTVSDVSLADAPGFQKAAGGAPANVAVGISRLGGRSAFVGKVGDDEFGRMLADILRENNVMDRGIRFDAHARTALAFVTLKMNGEREFMFYRNPSADMLLKESELDAELIREASVFHYGSISLIAEPTRSAHLAAMAIARQGGALLSYDPNVRLPLWPSADEARKGILSIWDEADLIKISDEEVGFLT-GGDSNNDEVVMSLWHSKLKLLLVTDGPKGCRYYTKSFRGRVDTISVKAIDTTGAGDAFVGGVLNQIADDISVLEDEQRLKKALRLANACGAITATKKGAIPALPDKSTVLELLNNL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
952	12		87		0.992554
1071			85	14	0.993533
1073	85		14		0.993533
1082		14		85	0.993533
1083	14		85		0.993533
1316	80			20	0.995493
1317	20			20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain