SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7812

Length: 2015 nt

UniGene Fasta

>sp_v3.0_unigene7812
ATATAGCTTTAGATTGAGATACCCATGGGGACGATTTGCCCCGGGAGTCCGGTATTACAGATAAACAGTGGAGTTCCCTGGAGCTCCTTGGCAGTGGAGAACTGAAATAGGCGGTGTACCGTTTGTTAACCTCCCGCCATACACAAAGGTCTGGCTCATCCTCTTCAAACATGAAGAGGAGAGGTAGTATGGGTTTGAATAACACAGCCAGGAACACAGGCTCTCTGATTTCACCCAAACCACCGATATCAACACCACCCTCACCAACAGCAAGAATTCCTCTCCATCACAAAATCTTCAAAACCATCACTAAAAAGAGATCTATTAAGCCCTCCAAAAGCGTGACCACCAAACGGGCTCTCCTCCATGATTTTGGGAAAGAACTCACTAGCTGCAAATCCCCATTGTTGTGGCAAAAACCATTCTATACCCTGGTCGAAGCTTCATATAAAACTGGTGATACTACAGATTGTTGCTGGAGGAGCCTTGGAGTGGGAATGAAGGAGTTGAAGTTAGACATCACATTCCCCACTGGGCAGACCTTCAGATGGAAGAAAACAGGTCCATCAGAGTACACAGGGGCAGTGGGAACTTATTTGTTCACACTCAGACAAGTTATTACTGATGATGATGACGAAGAAGAAGAAGAAGTTGAGTATTTCATTCATAACGCGAGTGGGTTCTCTCAGGAAGCCGAAGCGGCCCTGAGGGATTATTTGAATCTCGGTATTTCATTGACAGACATGTGGAAGGGCTTTGCAGAAGCAGATTCCAGGTTTGCAGCATTGGCTCCTTACATGGGTGGTGCTCGTTTGCTCAGACAGGATCCTCTCGAGTGCCTTTTTCAGTTTATTTGTTCTTCCAATAATAATATTCAGAGGATTACACAGATGGTGGAGTTTTTGTCCGGATTTGGACCTTGTTTGGGAACTGTTGAGGGAATTGAGTTTCATGCTTTTCCTTCATTGGAAGAGTTGTCTTCGTTCGATGAAGGGCAGCTTCGGAAAGCAGGATTCGGTTACAGGGCCAAATATATAGTTGGAGCAGTGGAGTCTCTTAAGTCAAAATGTGGCGGAGGCAAGGAATGGCTCATGTCTCTACGAAATTTACCGCTTGAAGAGGCTATTGAGGCTCTTTGCACATTGCCAGGAATAGGTCCAAAGGTTGCAGCTTGTGTTGCACTTTTTTCCCTAGATCAACACCATGCCATTCCCGTTGATACACATGTATGGCAGCTTGCTACACGATACATTACTCCTGAACTTTCAGGTGAGCGCTTCACCCCAAAGTTATCACGCAATGTCTCTGAAGCTTTTGTGAAAAGATTTGGCAAGTATGCAGGATGGGCACAAACTGTACTCTTTATAGCTGAGCTTTCCTCTCAACAAGATATCCTACCACAACACTTACGGTCAACAAAGGCGACAAAATCAAAGACAAAACATGAAGAACTTATTGATAGAGAGATAGAAGATTGACTATCACAGCATTGTTAGGGCTTGTGGTCTTTAGTCATGTAATTCGTAGATTCTTTCTTATATCTTGAAGGCATGGAAGAGTTTCATATCATCATGGTATGTCCAAAGAATGTCCTGCAAAATGATATAACACCTAGAGGTGTCAATGTCTACAAGATTAACCATCAATATCTTTATTTGTTGGCTCATTTGGACAGTAGAATAGCGTTGTTAGTAACTGTATTAGTATTTCTCCAAATTCTCCTTAGCTTCCCCTCATTATTTAAATTTTCAGGTTGCTTTTGCCCAGTGACCTTCCTGGTACATGTTGGGGATATGATTCATTATTATAAACGAAACCGCCAACTTATCAGTTGAGGCATTCATGGACAATTTTTTCGCAGATTTATGAATTATGGAAAAGGGCTTTTGTCAGTGTTCAAGTTGTTGGTGTAGCGTATGCACCTAGACTAATGCAGACATTTATTCTACAATAATGTCATTTCAGACATATTATATAAGTCGTAACTGTAACTGGTGAGTTTACATCCTGAAATT

Ace file of the UniGene sp_v3.0_unigene7812

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	8-oxoguanine DNA glycosylase [Populus nigra]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	8-oxoguanine DNA glycosylase	-	-	3.449e-09	-

Source	Gene names
Sma3	At1g21710; CHLREDRAFT_107185; F8K7.14; GSVIVT00015423001; MICPUCDRAFT_22516; MICPUN_64474; OGG1; OJ1004_H01.30; OSTLU_4304; Os02g0552600; OsI_07627; OsJ_07109; Ot16g02210; PHYPADRAFT_15407; POPTRDRAFT_1078556; PnOgg1; RCOM_0563200; ogg1;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidized purine base lesion DNA N-glycosylase activity	GO:0008534	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	base-excision repair	GO:0006284	Biological Process	-
Sma3	nucleotide-excision repair	GO:0006289	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	8-oxoguanine DNA glycosylase, N-terminal	IPR012904	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G21710.1	OGG1, ATOGG1 8-oxoguanine-DNA glycosylase 1 chr1:7624439-7625869 FORWARD LENGTH=365	58%
RefSeq	Arabidopsis thaliana	NP_173590.1	8-oxoguanine-DNA glycosylase 1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002307451.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABW0

Fln msg: your sequence is longer than subject: 436 - 255

Fln protein: MKRRGSMGLNNTARNTGSLISPKPPISTPPSPTARIPLHHKIFKTITKKRSIKPSKSVTTKRALLHDFGKELTSCKSPLLWQKPFYTLVEASYKTGDTTDCCWRSLGVGMKELKLDITFPTGQTFRWKKTGPSEYTGAVGTYLFTLRQVITDDDDEEEEEVEYFIHNASGFSQEAEAALRDYLNLGISLTDMWKGFAEADSRFAALAPYMGGARLLRQDPLECLFQFICSSNNNIQRITQMVEFLSGFGPCLGTVEGIEFHAFPSLEELSSFDEGQLRKAGFGYRAKYIVGAVESLKSKCGGGKEWLMSLRNLPLEEAIEALCTLPGIGPKVAACVALFSLDQHHAIPVDTHVWQLATRYITPELSGERFTPKLSRNVSEAFVKRFGKYAGWAQTVLFIAELSSQQDILPQHLRSTKATKSKTKHEELIDREIED*

Protein Length: 437

Fln nts: ATATAGCTTTAGATTGAGATACCCATGGGGACGATTTGCCCCGGGAGTCCGGTATTACAGATAAACAGTGGAGTTCCCTGGAGCTCCTTGGCAGTGGAGAACTGAAATAGGCGGTGTACCGTTTGTTAACCTCCCGCCATACACAAAGGTCTGGCTCATCCTCTTCAAAC_-_ATGAAGAGGAGAGGTAGTATGGGTTTGAATAACACAGCCAGGAACACAGGCTCTCTGATTTCACCCAAACCACCGATATCAACACCACCCTCACCAACAGCAAGAATTCCTCTCCATCACAAAATCTTCAAAACCATCACTAAAAAGAGATCTATTAAGCCCTCCAAAAGCGTGACCACCAAACGGGCTCTCCTCCATGATTTTGGGAAAGAACTCACTAGCTGCAAATCCCCATTGTTGTGGCAAAAACCATTCTATACCCTGGTCGAAGCTTCATATAAAACTGGTGATACTACAGATTGTTGCTGGAGGAGCCTTGGAGTGGGAATGAAGGAGTTGAAGTTAGACATCACATTCCCCACTGGGCAGACCTTCAGATGGAAGAAAACAGGTCCATCAGAGTACACAGGGGCAGTGGGAACTTATTTGTTCACACTCAGACAAGTTATTACTGATGATGATGACGAAGAAGAAGAAGAAGTTGAGTATTTCATTCATAACGCGAGTGGGTTCTCTCAGGAAGCCGAAGCGGCCCTGAGGGATTATTTGAATCTCGGTATTTCATTGACAGACATGTGGAAGGGCTTTGCAGAAGCAGATTCCAGGTTTGCAGCATTGGCTCCTTACATGGGTGGTGCTCGTTTGCTCAGACAGGATCCTCTCGAGTGCCTTTTTCAGTTTATTTGTTCTTCCAATAATAATATTCAGAGGATTACACAGATGGTGGAGTTTTTGTCCGGATTTGGACCTTGTTTGGGAACTGTTGAGGGAATTGAGTTTCATGCTTTTCCTTCATTGGAAGAGTTGTCTTCGTTCGATGAAGGGCAGCTTCGGAAAGCAGGATTCGGTTACAGGGCCAAATATATAGTTGGAGCAGTGGAGTCTCTTAAGTCAAAATGTGGCGGAGGCAAGGAATGGCTCATGTCTCTACGAAATTTACCGCTTGAAGAGGCTATTGAGGCTCTTTGCACATTGCCAGGAATAGGTCCAAAGGTTGCAGCTTGTGTTGCACTTTTTTCCCTAGATCAACACCATGCCATTCCCGTTGATACACATGTATGGCAGCTTGCTACACGATACATTACTCCTGAACTTTCAGGTGAGCGCTTCACCCCAAAGTTATCACGCAATGTCTCTGAAGCTTTTGTGAAAAGATTTGGCAAGTATGCAGGATGGGCACAAACTGTACTCTTTATAGCTGAGCTTTCCTCTCAACAAGATATCCTACCACAACACTTACGGTCAACAAAGGCGACAAAATCAAAGACAAAACATGAAGAACTTATTGATAGAGAGATAGAAGATTGA___CTATCACAGCATTGTTAGGGCTTGTGGTCTTTAGTCATGTAATTCGTAGATTCTTTCTTATATCTTGAAGGCATGGAAGAGTTTCATATCATCATGGTATGTCCAAAGAATGTCCTGCAAAATGATATAACACCTAGAGGTGTCAATGTCTACAAGATTAACCATCAATATCTTTATTTGTTGGCTCATTTGGACAGTAGAATAGCGTTGTTAGTAACTGTATTAGTATTTCTCCAAATTCTCCTTAGCTTCCCCTCATTATTTAAATTTTCAGGTTGCTTTTGCCCAGTGACCTTCCTGGTACATGTTGGGGATATGATTCATTATTATAAACGAAACCGCCAACTTATCAGTTGAGGCATTCATGGACAATTTTTTCGCAGATTTATGAATTATGGAAAAGGGCTTTTGTCAGTGTTCAAGTTGTTGGTGTAGCGTATGCACCTAGACTAATGCAGACATTTATTCTACAATAATGTCATTTCAGACATATTATATAAGTCGTAACTGTAACTGGTGAGTTTACATCCTGAAATT

Fln Alignment:

Contig7812___MKRRGSMGLNNTARNTGSLXXXXXXXXXXXXXXXXXXLHHKI-FKTITKKRSIKPSKSVTTKRALLHDFGKELTSCKSPLLWQKPFYTLVEASYKTGDTTDCCWRSLGVGMKELKLDITFPTGQTFRWKKTGPSEYTGAVGTYLFTLRQVITXXXXXXXXXXXYFIHNASGFSQEAEAALRDYLNLGISLTDMWKGFAEADSRFAALAPYMGGARLLRQDPLECLFQFICSSNNNIQRITQM----VEFLSGFGPCLG
D5ABW0______________MKRRSSMGMNNKLRSTRSLLSLKPPISTPPSPTATTPPHHQITFKAITKKRSIKTSNSLTTKRTLLHDFHKELTICKSPLLLQKPFNSLVETSYKIGDTTERCWRSLGVGIKELKLDITFPTGQTFRWKKTGPSEYTGAVGTYLFTLRQV----TIDDDDEVEYFIHNPSGFSQEAELALRDYLNLSISLTDMWKGFAEADSRFAALAPYMGGARLLRQDPVECLFQFICSSNNNIQRITQMVGVFVRIWTLFGDCRG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1553	85		14		0.993533
1738		66		33	1.0
1739		60		40	1.0
1800		13		86	0.999973
1864		75		25	1.0
1894		20		80	0.995493
1921		75		25	0.996473
1935		50		50	1.0
1950	25		75		0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
623	634	TGA TGA TGA TGA	12
636	651	GAA GAA GAA GAA GAA G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain