SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7808

Length: 1999 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7808
CGTCGTGACCTGGCGGAAGGCACTTCGTTTTCTTGGTTGTCACTCAGAGCAGCAGCACATGCCAGTGGCAGTGGGCAGTCTGGCACACCATTTACTGCAATGTGAGCACTCCCATGTTATGCTCTCTAATATTTGACTCTCAATTCCTTTACTCGGCCTTCAAATCCTGTTTGCAGCCTTGAAATCCATAGAGAAGGTCTCTGTAAGATTAGCCCTTTGAATTGAATTCCGAGCGGGCTAAAGAGGCAGAAAAATGAGGGAAATATTGCACATCCAGGGAGGGCAATGCGGGAACCAGATCGGTTCCAAGTTCTGGGAAGTGATCTGTGACGAGCACGGGATCGATCCCACGGGATCTTACCGCGGGGATTCCGATGTGCAGTTGGAAAGAATCAATGTATATTACAATGAGGCAAGCGGAGGGAGATATGTGCCTAGGGCTGTGCTGATGGATCTGGAGCCTGGCACTATTGATAGTGTCAGATCGGGTGCCTATGGCCAGATATTCAGGCCTGATAACTTTGTCTTCGGCCAGAGTGGGGCTGGGAATAACTGGGCCAAGGGTCATTACACTGAGGGCGCTGAGCTCATTGATGGAGTATTGGATGTCGTTAGGAAAGAGGCTGAAAACTGTGACTGCCTTCAAGGATTTCAAGTCTGCCACTCTCTTGGAGGAGGAACTGGATCAGGGATGGGAACATTATTGATCTCAAAGATAAGGGAGGAGTACCCTGACAGAATGATGTTGACATTCTCCGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTTGAGCCTTACAATGCAACACTTTCAGTGCATCAGTTGGTTGAGAATGCAGATGAATCCATGGTTCTTGACAATGAAGCTCTGTACGATATTTGCTTCAGAACATTAAAGCTCACAACTCCTACATTTGGAGACCTTAATCATTTGATTTCAGCAACCATGAGCGGGGTAACCTGTTGTTTACGCTTCCCAGGACAGCTGAACTCTGATCTCCGCAAGCTGGCAGTGAATCTCATCCCCTTCCCTCGTCTCCATTTTTTTATGGTTGGTTTTGCGCCACTGACATCAAGGGGGTCGCAAGTTTATCGTGCACTAACTGTGCCTGAGCTCACCCAACAGATGTGGGATTCCAAGAATATGATGTGTGCAGCTGATCCTCGTCACGGCCGTTATCTAACAGCCTCTGCCATGTTCAGAGGAAGGATGAGCACCAAGGAAGTAGATGAACAGATGCTGAACGTGCAGAACAAGAATTCATCCTATTTTGTTGAGTGGATACCAAACAATGTCAAATCAAGTGTCTGTGATATTCCTCCGAAAGGGCTGAAGATGTCATCCACGTTCATTGGCAATTCCACATCAATTCAGGAAATGTTTAGACGCGTGAGTGAGCAATTCACGGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACTGGTGAAGGTATGGATGAGATGGAGTTTACGGAGGCTGAGAGCAACATGAATGATTTGGTTTCAGAATACCAGCAATATCAAGATGCCACTGCAGATGAGGAGGTTGACTATGAAGAAGAAGAAGAAGAAGAAATTCCAATGTAATTAATGTTGTGGAAGGTTCTATTGTTGTTTCTGCTATTTCTCTACAAGTGAAGATGAAATGGATTTCTTTGCAAGTACATCAGTGTGATTTTGCGTAGATAACAAGGTGGTATTGCCCCTAGGTTGCTGCTAAAAGTAGAGGTGTTGCAGTTGAGTGTGTATAAAGGTAGGCAGTTTGGTCAGTTGTGACATATATGTTGAAGGCTATGTAACTGTAACAACTAGTTGATTATCATGACTGATATTTTTGGGGGGTTGCAAGAGTGGTTCTGTTTGCTAAATTGTTAGACAATAAGCAATGTTCTCTCATACATTTTTTTGCCAGATTTAACTATTTGTATCACCTGATTTGTCAAATTTCGTAACTTGAGATTTAATTCTTTAGTTTTCTTATGAGAACTTTAC

Ace file of the UniGene sp_v3.0_unigene7808 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Beta tubulin 3	-	-	-

Source	Gene names
Sma3	tub3;

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12250.1	TUB6 beta-6 tubulin chr5:3961317-3962971 REVERSE LENGTH=449	95%
RefSeq	Arabidopsis thaliana	NP_196786.1	tubulin beta-6 chain [Arabidopsis thaliana]	95%
RefSeq	Populus trichocarpa	XP_002299042.1	tubulin, beta chain [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT51

Fln msg:

Fln protein: MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYRGDSDVQLERINVYYNEASGGRYVPRAVLMDLEPGTIDSVRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDGVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQVYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEVDYEEEEEEEIPM*

Protein Length: 448

Fln nts: CGTCGTGACCTGGCGGAAGGCACTTCGTTTTCTTGGTTGTCACTCAGAGCAGCAGCACATGCCAGTGGCAGTGGGCAGTCTGGCACACCATTTACTGCAATGTGAGCACTCCCATGTTATGCTCTCTAATATTTGACTCTCAATTCCTTTACTCGGCCTTCAAATCCTGTTTGCAGCCTTGAAATCCATAGAGAAGGTCTCTGTAAGATTAGCCCTTTGAATTGAATTCCGAGCGGGCTAAAGAGGCAGAAAA_-_ATGAGGGAAATATTGCACATCCAGGGAGGGCAATGCGGGAACCAGATCGGTTCCAAGTTCTGGGAAGTGATCTGTGACGAGCACGGGATCGATCCCACGGGATCTTACCGCGGGGATTCCGATGTGCAGTTGGAAAGAATCAATGTATATTACAATGAGGCAAGCGGAGGGAGATATGTGCCTAGGGCTGTGCTGATGGATCTGGAGCCTGGCACTATTGATAGTGTCAGATCGGGTGCCTATGGCCAGATATTCAGGCCTGATAACTTTGTCTTCGGCCAGAGTGGGGCTGGGAATAACTGGGCCAAGGGTCATTACACTGAGGGCGCTGAGCTCATTGATGGAGTATTGGATGTCGTTAGGAAAGAGGCTGAAAACTGTGACTGCCTTCAAGGATTTCAAGTCTGCCACTCTCTTGGAGGAGGAACTGGATCAGGGATGGGAACATTATTGATCTCAAAGATAAGGGAGGAGTACCCTGACAGAATGATGTTGACATTCTCCGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTTGAGCCTTACAATGCAACACTTTCAGTGCATCAGTTGGTTGAGAATGCAGATGAATCCATGGTTCTTGACAATGAAGCTCTGTACGATATTTGCTTCAGAACATTAAAGCTCACAACTCCTACATTTGGAGACCTTAATCATTTGATTTCAGCAACCATGAGCGGGGTAACCTGTTGTTTACGCTTCCCAGGACAGCTGAACTCTGATCTCCGCAAGCTGGCAGTGAATCTCATCCCCTTCCCTCGTCTCCATTTTTTTATGGTTGGTTTTGCGCCACTGACATCAAGGGGGTCGCAAGTTTATCGTGCACTAACTGTGCCTGAGCTCACCCAACAGATGTGGGATTCCAAGAATATGATGTGTGCAGCTGATCCTCGTCACGGCCGTTATCTAACAGCCTCTGCCATGTTCAGAGGAAGGATGAGCACCAAGGAAGTAGATGAACAGATGCTGAACGTGCAGAACAAGAATTCATCCTATTTTGTTGAGTGGATACCAAACAATGTCAAATCAAGTGTCTGTGATATTCCTCCGAAAGGGCTGAAGATGTCATCCACGTTCATTGGCAATTCCACATCAATTCAGGAAATGTTTAGACGCGTGAGTGAGCAATTCACGGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACTGGTGAAGGTATGGATGAGATGGAGTTTACGGAGGCTGAGAGCAACATGAATGATTTGGTTTCAGAATACCAGCAATATCAAGATGCCACTGCAGATGAGGAGGTTGACTATGAAGAAGAAGAAGAAGAAGAAATTCCAATGTAA___TTAATGTTGTGGAAGGTTCTATTGTTGTTTCTGCTATTTCTCTACAAGTGAAGATGAAATGGATTTCTTTGCAAGTACATCAGTGTGATTTTGCGTAGATAACAAGGTGGTATTGCCCCTAGGTTGCTGCTAAAAGTAGAGGTGTTGCAGTTGAGTGTGTATAAAGGTAGGCAGTTTGGTCAGTTGTGACATATATGTTGAAGGCTATGTAACTGTAACAACTAGTTGATTATCATGACTGATATTTTTGGGGGGTTGCAAGAGTGGTTCTGTTTGCTAAATTGTTAGACAATAAGCAATGTTCTCTCATACATTTTTTTGCCAGATTTAACTATTTGTATCACCTGATTTGTCAAATTTCGTAACTTGAGATTTAATTCTTTAGTTTTCTTATGAGAACTTTAC

Fln Alignment:

Contig7808___MREILHIQGGQCGNQIGSKFWEVICDEHGIDPTGSYRGDSDVQLERINVYYNEASGGRYVPRAVLMDLEPGTIDSVRSGAYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDGVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQVYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA
C0PT51______________MREILHIQAGQCGNQIGAKFWEVICDEHGIDPTGRYSGDGDLQLERINVYYNEANGGRYVPRAVLVDLEPGTMDSVRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSILDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLISRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
892	33		66		0.99834
1015		40		60	1.0
1201	88		11		0.992527
1883	87		12		0.999964
1919	86	13			0.999973
1953	10	20			0.999998
1954		10	90		0.90298
1955	10	90			0.90298
1957	10			90	0.90298
1958			10	90	0.90298
1959	88	11			0.923564
1961	88	11			0.923564
1962	88		11		0.923564
1963		11		88	0.923564
1964		12	87		0.992554
1966	12			87	0.992554
1968	87		12		0.992554
1969	87			12	0.992554
1970	87	12			0.992554
1971	12	87			0.992554
1972		12		87	0.992554
1973			87	12	0.992554
1974	87		12		0.992554
1975	85	14			0.993533
1976			28	71	1.0
1978	16		83		0.994512
1979	33	66			1.0
1980	16	66	16		0.988813
1982	20		20	60	0.99255
1983	50	25	25		1.0
1985	25	25			0.995533
1987	25	75			0.996473
1988	25	50		25	0.995533
1989	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
418	438	TTC TTC TTC TTC TTC TTC TTC	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain