SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7795

Length: 1711 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7795

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RNK5_RICCO	-	-	4.0e-39	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMB6

Fln msg:

Fln protein: MAASSYYCMLTNTHLNRNHQSTVLPLRFSSVKLSARPHCSLQRSHVVVRRKVFRITAIAQEETKITEQSVPEEEETNKEQQSENEEELPRRRTKLYVGNLPRSCDHAQLTELFQEFGTVESVEIVRNEETGISRGFAFVTMSRVTEAKSAIEKLQGYDLDGRDMIVNFPARVISKKKETDDSYVETPYQLFVGNLAWSVKKEILKSLFSQFGNVSAAKVIYSAKGGVPRAFGFVCLSSQSEMEDALAALHGKEFHGRNLMVRRAKPTSKDMVVSNVEENTAKPSTMEEDSRTETVNTTFVGSPYAVYVSNLSFQVKNKALTELFSQHGNVLDARVLYARKAGRSRAYGFVNFSSQAEVEAAIAALDKKEFYERKLVVKEAKLKSQL*

Protein Length: 388

Fln nts: CAAAGATATCTATATTGCTATTTATATCTTCTTTAATCCAATGCCCCAAATTTACATTTTATAGAAAACTGAGCATGAAGTTCAGTCCCATCGTACATAAATCGCCTTATCCTCTTCCATTTGTATAAGAACTGTCTCCATAGTTACACTGCTGCTGGAGGAG_-_ATGGCAGCTTCTTCATATTATTGTATGCTAACAAATACCCATCTCAATCGTAATCACCAAAGCACTGTTCTTCCTCTGAGATTCTCCTCTGTGAAACTATCAGCGCGACCCCATTGCTCTCTCCAACGCTCCCATGTTGTCGTGCGAAGAAAGGTATTCAGAATCACAGCAATAGCTCAAGAAGAAACGAAAATTACGGAGCAATCAGTACCAGAAGAAGAAGAAACAAATAAAGAGCAACAGTCAGAAAATGAAGAAGAGTTACCACGTAGAAGAACTAAACTCTATGTGGGCAATCTCCCTAGGAGCTGTGACCATGCACAGCTTACTGAGCTGTTTCAGGAATTCGGAACCGTGGAGTCTGTAGAGATTGTTCGTAACGAGGAAACTGGGATAAGCAGAGGATTTGCTTTTGTCACAATGAGCAGGGTTACAGAAGCTAAGTCAGCCATTGAAAAATTGCAAGGCTATGACTTGGATGGACGGGATATGATTGTCAACTTTCCAGCAAGAGTAATATCCAAGAAAAAGGAAACCGATGACTCCTATGTTGAGACTCCATATCAATTGTTTGTGGGTAACCTCGCTTGGTCAGTGAAGAAGGAAATCCTCAAAAGTTTGTTCAGTCAGTTTGGGAATGTGTCAGCTGCGAAAGTCATTTATAGTGCTAAAGGCGGAGTGCCTCGGGCTTTTGGCTTTGTTTGTTTATCTTCACAATCAGAAATGGAGGATGCCCTTGCTGCACTGCACGGGAAGGAGTTTCATGGACGGAATCTGATGGTGAGACGAGCCAAACCAACGAGCAAAGATATGGTGGTAAGTAATGTTGAAGAGAACACTGCAAAACCTTCAACCATGGAGGAAGATAGCAGAACTGAGACAGTCAATACCACTTTTGTTGGAAGTCCATATGCAGTATATGTAAGTAATCTCTCGTTTCAAGTGAAGAACAAAGCTCTCACAGAATTATTCAGCCAACATGGAAATGTGTTGGATGCAAGAGTCCTTTATGCTCGTAAAGCTGGAAGATCCCGTGCCTATGGTTTTGTTAATTTCTCTTCACAGGCAGAAGTTGAGGCAGCAATTGCTGCATTGGATAAGAAGGAATTTTATGAAAGAAAACTAGTAGTGAAAGAAGCAAAGTTGAAGAGCCAATTATGA___TCATCGATGAAAATTTGCAGAAGCCAGGATGTTCCGTCCTGGATCTCATCTTTATAAGGGCTGTACTTAAGCCAAACCTGTACAAGATGGCAAATTGCTAGTTATGGTTTGTGACTGCAATTTTTTCTCAAGGATTTTATCCAGCATGACCAGAAGTATGGTTTGGTGAAACGGCTCCTTTGCGTTCCATTACCCCTGGAATTTATATCATATTGTTGAAATAGTTTGCAAGGGTAGTAAAGGAGCAAAATATGGTGGGCATAATGGTAAATTATTTTCCTTTTCTCTTTGGATTAACCCATTAGAGCATTTACAGGTTTTTTCTAAAGGACTTTAGCAAGCATGTCTAAAATACGGTCTGGTGAAAATCCTCCTATGTATTCCATT

Fln Alignment:

Contig7795___MAASSYYCMLTNTHLNRNHQSTVLPL-RFSSVKLSARPHCSLQRSHVVVRRKVFRITAIAQEETKITEQSVPXXXXXXXXXXXXXXXXLPRRRTKLYVGNLPRSCDHAQLTELFQEFGTVESVEIVRNEETGISRGFAFVTMSRVTEAKSAIEKLQGYDLDGRDMIVNFPARVISKKKETDDSYVETPYQLFVGNLAWSVKKEILKSLFSQFGNVSAAKVIYSAKGGVPRAFGFVCLSSQSEMEDALAALHGKEFHGRNLMVRRAKPTSKDMVVSNVEENTAKPSTMEEDSRTETVNTTFVGSPYAVYVSNLSFQVKNKALTELFSQHGNVLDARVLYARKAGRSRAYGFVNFSSQAEVEAAIAALDKKEFYERKLVVKEAKLKSQL
B8LMB6______________MAASSCYCIPANTHLNLNHKTNVLPLLRMSSVKISMRPRCSLQLSHVLARRKVFRITALAQEETQITEQSVPEEEETNKERQPKNEEELPPRRTKLYVGNLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGSDLGGRDMIVNFPAKVLSKKKETDDSYIETPYQLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTETVKATFVGSAYGVYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDKKEFYERKLVVKEAKVKSQL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
711	33			66	0.997452
739	20			80	0.995493
740	20		80		0.995493
741			80	20	0.995493
816		14	85		0.993533
876		28		71	1.0
993	25			75	0.996473
994		25	75		0.996473
996	75			25	0.996473
997			75	25	0.996473
1094	83		16		0.994512
1272	88			11	0.923564
1303			88	11	0.923564
1304		88		11	0.923564
1433	14		85		0.993533
1434		14		85	0.993533
1606		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
376	388	AGA AGA AGA AGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain