SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7783

Length: 1131 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7783

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 716B2 n=2 Tax=Picea sitchensis RepID=C16B2_PICSI	-	-	0.0	86%
FL-Next	sp=Cytochrome P450 716B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Cytochrome P450	-	-	5.304e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Taxane 13-alpha-hydroxylase.	EC:1.14.13.77	-	4.25e-28	-

Source	KEGGs	Term	e value	Identity
Sma3	Diterpenoid biosynthesis	00904	4.25e-28	%
Sma3	Biosynthesis of terpenoids and steroids	01062	4.25e-28	%
Sma3	Metabolic pathways	01100	4.25e-28	%
Sma3	Biosynthesis of secondary metabolites	01110	4.25e-28	%

Source	Gene names
Sma3	10bh; At2g29090; At5g36110; At5g36130; At5g45340; CYP707A10; CYP707A2; CYP707A3; CYP716A10; CYP716A11P; CYP716A12; CYP716A3; CYP716A5v2; CYP716A6; CYP716A8; CYP716A9; CYP716B1; CYP716B2; CYP716B3; CYP716B4; CYP716C1; CYP716C2v1; CYP716C2v2; CYP716D1; CYP7

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	(+)-abscisic acid 8'-hydroxylase activity	GO:0010295	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to red or far red light	GO:0009639	Biological Process	-
Sma3	abscisic acid metabolic process	GO:0009687	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	abscisic acid catabolic process	GO:0046345	Biological Process	-
Sma3	release of seed from dormancy	GO:0048838	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Hemocyanin, copper-type	IPR000896	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, B-class	IPR002397	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G36110.1	CYP716A1 cytochrome P450, family 716, subfamily A, polypeptide 1 chr5:14195377-14197613 FORWARD LENGTH=477	47%
RefSeq	Arabidopsis thaliana	NP_198460.1	cytochrome P450, family 716, subfamily A, polypeptide 1 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002309057.1	cytochrome P450 [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q50EK0

Fln msg: your sequence is shorter than subject: 307 - 497

Fln protein: VVTLAVTHLFATINNPDEQVKLWQHFRVFVKGVLQIPIDLPGTRYNKAKHAANAIRQQLNHILNERKIALEVGKASTEQDLLSFLISNVDEHGESLTDSEILDNILDLLYAGHDTSSSTLTVLLKFLAENPQCYEEVLREQLDIASSKKAGQLLEWEDLQRMKYSWRVAQEALRLYPAAQGTFRKAIKDFTYEGFTIPKGWKLYWTVNSTHRKSEYFSDPDKFDPSRFEGEGPPPYTFVPFGGGPRMCPGNEFARMEILVFLHNIVKNFRWNLVNPCEHVIVDPMPSPVDGLPIKLVPHDEGKISV*

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTTTGCCACCATAAACAATCCTGACGAACAAGTCAAGCTTTGGCAACATTTTAGGGTTTTTGTGAAAGGAGTACTGCAGATTCCCATAGATCTACCCGGTACGCGATATAACAAAGCCAAGCACGCAGCTAATGCCATTCGCCAACAACTCAACCACATTCTTAATGAGAGGAAAATTGCATTAGAGGTGGGAAAGGCTTCTACAGAGCAAGATCTGTTGTCGTTCCTGATCTCTAATGTTGACGAGCACGGTGAGTCTCTCACGGACAGCGAGATTCTGGACAATATCCTTGATCTATTATATGCAGGTCATGACACCAGCAGTTCTACTTTGACAGTGCTGCTTAAATTTTTGGCGGAGAACCCTCAGTGCTATGAAGAAGTACTAAGAGAGCAACTGGATATAGCAAGTTCAAAGAAGGCAGGGCAACTTCTAGAATGGGAGGACCTCCAAAGAATGAAATATTCGTGGAGAGTTGCTCAGGAAGCGCTTCGGCTGTACCCTGCTGCTCAAGGAACTTTTCGCAAGGCCATCAAAGATTTCACATACGAGGGATTCACAATCCCTAAAGGATGGAAGTTGTATTGGACCGTCAATTCGACCCACCGGAAATCTGAGTATTTCAGCGACCCGGACAAATTCGATCCATCGAGATTTGAGGGAGAGGGACCTCCTCCCTACACGTTTGTTCCATTTGGAGGTGGCCCGCGAATGTGCCCGGGTAATGAGTTTGCAAGAATGGAAATTCTTGTTTTTCTCCATAATATTGTAAAGAATTTCAGGTGGAATTTAGTGAATCCCTGTGAGCACGTGATTGTGGACCCCATGCCTTCCCCTGTCGATGGATTGCCCATAAAACTTGTTCCGCACGACGAAGGGAAGATTTCCGTTTAG___AAGGAACCGTGACCAACCCAATAATGCATTTCAAGCAAAGTGGTAACTGGATTTGCACAAAATTATATTCTATTTTATTTAAATAGGATTCCTTCTCTTTGATACACAACTTGTTGGATTCTAGAATTGGTGCCATGCTAAGGCTTACAAGAGGATTAGGTTTCTTAATGTTGAAGATTGATATCTTGCCATTTATTTATTAAAGAGGG

Fln Alignment:

Contig7783___LFATINNPDEQVKLWQHFRVFVKGVLQIPIDLPGTRYNKAKHAANAIRQQLNHILNERKIALEVGKASTEQDLLSFLISNVDEHGESLTDSEILDNILDLLYAGHDTSSSTLTVLLKFLAENPQCYEEVLREQLDIASSKKAGQLLEWEDLQRMKYSWRVAQEALRLYPAAQGTFRKAIKDFTYEGFTIPKGWKLYWTVNSTHRKSEYFSDPDKFDPSRFEGEGPPPYTFVPFGGGPRMCPGNEFARMEILVFLHNIVKNFRWNLVNPCEHVIVDPMPSPVDGLPIKLVPHD
Q50EK0______________LFASINNKDDLGRLWLHFMVFVKGVMQIPIDLPGTRYNKAKHAANAIRQQLGSIINERKIGLEAGNASPEQDLLSFLLSNVDEQGESLTDNEIQDNILLLLYAGHDTSSSTLTVLLKFLAENPHCYEEVLREQLDIAGSKEAGQLLEWEDLQRMKYSWRVAQEALRLFPAAQGSFRKAIKEFIYDGFTIPKGWKMYWTVNSTHRKSEYFSNPETFDPSRFEGEGPPPYTFVPFGGGPRMCPGNEFARLEILVFLHNIVKNCKWNLVNPGEKVIVDPMPAPVNGLPIKLVPHD

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
385	33		66		1.0
386			66	33	0.997452
387	66		33		0.997452
389	66		33		0.997452
725		20	80		0.999996
727	80			20	0.999996
728		20	80		0.999996
733	20	80			0.999996
736			80	20	0.999996
737		77		22	0.999999
739	77		22		0.999999
740	77	22			0.999999
746	22	77			0.999999
748			77	11	0.968132
749		11	77	11	0.968132
750	11	11	77		0.968132
751	11			88	0.923564
786			11	88	0.923564
787		88		11	0.923564
789	88		11		0.923564
791	88		11		0.923564
793		11		88	0.923564
794	88	11			0.923564
799	88		11		0.923564
800	88	11			0.923564
801	88			11	0.923564
803	88			11	0.923564
804	88	11			0.923564
805	11			88	0.923564
806		11		88	0.923564
819		11		88	0.923564
821			88	11	0.923564
838		75	25		1.0
859			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain