SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7774

Length: 1705 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7774

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HSP68=68 kda heat-stress DnaK homolog [Lycopersicon peruvianum=tomatoes, Peptide Mitochondrial Partial, 580 aa]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Sma3	Heat shock protein 70	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	9.352e-06	-

Source	Gene names
Sma3	AT4g24280; AT4g37910; At3g09440; At3g12580; At4g24280; At4g37910; At5g02490; At5g02500; At5g09590; At5g28540; At5g42020; At5g49910; BIP; BIP1; BIP2; BIP3; BIP4; BIP5; BIPE2; BIPE3; BLP4; BiP; Bip; CHLREDRAFT_126835; CHLREDRAFT_133650; CHLREDRAFT_133859; C

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Glycosyl transferase, family 9	IPR002201	-	-
Sma3	Lipopolysaccharide heptosyltransferase I	IPR011908	-	-
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09590.1	MTHSC70-2, HSC70-5 mitochondrial HSO70 2 chr5:2975721-2978508 FORWARD LENGTH=682	75%
RefSeq	Arabidopsis thaliana	NP_196521.1	mitochondrial HSO70 2 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002313955.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM05

Fln msg: your sequence is shorter than subject: 386 - 708

Fln protein: WETEIDLSQDKLALQRLREAAEKAKVELSSSSQTEINLPFITADASGAKHLNVTITRSKFEMLVNHLIERTRIPCKNCLKDAGITASEVDEVILVGGMSRVPRVQEIVAEIFGKMPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGLETLGGVFTRLISRNTTIPTKKSQIFSTAADGQTQVGVRVFQGEREMAADNKLLGEFELLGIPPAPRGVPQIEVTFDIDANGIVTVSARDKSTGKEQQITIKSSGGLSDDAIQKMVKEAEMHAQKDQEKKQLIDARNHADSMIYSVEKSLSDYKDKIPADVVTQIESAVVDLKKSMSSDDLDMIKAKTDAVSQASLKIGQHMHQQSGGSSSSGSEGGTEAPEAEYEEVRK*

Protein Length: 387

Fln nts: ATGGGAGACGGAAATTGACTTATCCCAGGATAAGCTAGCCCTACAAAGGCTTCGCGAGGCTGCAGAGAAAGCGAAGGTGGAGCTGTCATCTTCTTCTCAAACAGAGATTAATCTACCATTTATCACGGCAGATGCATCTGGTGCAAAGCATTTGAATGTTACAATAACTCGTTCAAAGTTTGAAATGCTAGTAAATCACTTAATCGAGAGAACAAGAATCCCTTGCAAGAATTGTCTAAAAGATGCAGGGATTACGGCATCGGAAGTGGATGAAGTTATTCTTGTGGGAGGAATGTCGCGGGTGCCGAGGGTTCAAGAGATTGTTGCTGAGATTTTTGGAAAGATGCCAAGTAAAGGTGTTAATCCAGACGAGGCTGTGGCAATGGGTGCCGCCATCCAAGGTGGAATTCTGCGGGGTGATGTAAAGGAACTGCTTTTACTGGATGTGACTCCTCTTTCTCTTGGATTGGAAACACTTGGCGGGGTTTTCACTAGGTTAATAAGCAGAAATACAACAATTCCAACGAAGAAGAGTCAGATATTCTCAACTGCAGCAGATGGTCAAACTCAGGTTGGTGTAAGGGTATTCCAAGGAGAGCGTGAAATGGCTGCAGACAATAAGCTTCTAGGTGAGTTTGAGTTGCTTGGTATTCCGCCAGCTCCTAGAGGTGTTCCCCAAATAGAAGTTACCTTTGACATTGATGCAAATGGTATAGTGACTGTATCTGCCCGTGACAAATCCACTGGCAAGGAGCAACAAATTACTATAAAATCATCTGGAGGGCTTTCGGACGATGCAATCCAGAAGATGGTGAAGGAAGCTGAGATGCACGCCCAAAAGGATCAGGAAAAAAAACAGTTAATTGATGCTAGAAACCACGCAGACAGCATGATTTACAGTGTGGAGAAGAGCTTAAGTGACTACAAGGACAAGATTCCTGCAGATGTAGTCACCCAAATTGAATCCGCAGTAGTTGATTTGAAGAAATCCATGTCCAGTGATGATTTGGATATGATCAAAGCGAAAACTGACGCTGTGAGTCAAGCGTCCTTGAAAATAGGACAGCATATGCATCAGCAATCTGGTGGGTCATCTTCTTCTGGATCAGAAGGGGGAACTGAGGCACCTGAAGCTGAATATGAGGAGGTGAGGAAATGA___TCAAAAATCAATTGAGGAGGTGAGGGAATGATCAAAAATCAATCCAGAGTTGCAAAATACGTGTCTGGTTTCCAAAGTCATTTAGGTCAATTTTTTGATTTAGGATACGTGTCTGGTTTCCAAAGTCATTTAGATCAATTTTTTGATTTAGGCTAGTAATAGAGCAGTTTTGAAAAATTTAAACGGCTAGAACCATTTAGAAGGTAGGCATCTCTCTGACCCGAAAAAAGGTTTTTCTTTAGCAGAGCTGTAGTGGAAACATAGGTGGCAGGAGACTATACTAAACTGCAGTGATGTAGTTATTTGTTCTAATCTAAAGTCAGTGATTTGTGTTGCTGGTTTTCTCCACAAATCAATTATACTTGTGATCGATTCAAGGCAGACTGATATAGATGAGCCCTACCAAGGGGAAACTTGCTTAGCAACAACATCAACTTTGATCAGGAAACAAAGTGGGATTGGTTTAATTTTCTGAAGTCTAGAAATACCCAGCAATATAGTCTCTTATGTGAACTTACAAATTACTTAACAATTTCAATTGTTAAT

Fln Alignment:

Contig7774___IDLSQDKLALQRLREAAEKAKVELSSSSQTEINLPFITADASGAKHLNVTITRSKFEMLVNHLIERTRIPCKNCLKDAGITASEVDEVILVGGMSRVPRVQEIVAEIFGKMPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGLETLGGVFTRLISRNTTIPTKKSQIFSTAADGQTQVGVRVFQGEREMAADNKLLGEFELLGIPPAPRGVPQIEVTFDIDANGIVTVSARDKSTGKEQQITIKSSGGLSDDAIQKMVKEAEMHAQKDQEKKQLIDARNHADSMIYSVEKSLSDYKDKIPADVVTQIESAXXXXXXXXXXXXXXXIKAKTDAVSQASLKIGQHMHQQ
B8LM05______________IDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFVTATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGIPQIEVKFDIDANGILSVAAVDKGTGKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGEKVPAEVKDKVEAKLKELKDAIDSGSTQSMKDTMAALNQEVMQLGQSLYNQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1214	88		11		0.923564
1215	77		11	11	0.968132
1216	88	11			0.923564
1217	88		11		0.923564
1220		88		11	0.923564
1221		11	88		0.923564
1224			11	88	0.923564
1230		14		85	0.993533
1231	14			85	0.993533
1257			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain