SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7773

Length: 2005 nt

UniGene Fasta

>sp_v3.0_unigene7773
GATGGCCATGATGGAAGTTTCGGATTCCTCTGGCAGCTCGGCTTTAATATGCCCCTTGTTACTTTGAGATTCATGTCCAGAGGGAAAATGGGGTTCTCGCAGAGGATACTGGCAGTGATCTGTCTGGTGTGGTTTGCCTCTGCTGGGGTTCGAACCGAGGACGCTTACAAGTACTTTACATGGACTGTCACATATGGGACTATTTATCCCATGGGTGTCCCTCAGCAGGGGATCTTAATCAACGGCCAGTTTCCTGGACCCCAACTCGATGTTGTGACGAACGATAATGTTATTATCAATGTTTTTAACTATCTGAACGAGCCTTTTTTGCTTACATGGAATGGAATCCAGCAACGAAGAAATTCGTGGCAAGATGGAGTGCTGGGAACCAATTGTCCAATACTTCCCCGCAGAAACTTCACTTACAAATTTCAAGTCAAGGATCAGATCGGCACCTACTTTTATTTTCCTTCCACGGCTCTGCACAGGGCTGCTGGGGGATTTGGAGGTTTGGCCATTGCTAGCAGGTCTGTTATCCCTGTTCCGTACCCCACTCCTAATGGGGAATACACCGCTTTGATCGGAGACTGGTACAAGCTTAATCACGCGGTTCTTCGAAGATGGCTTGATAATGGAAAAGCTCTCGGCATGCCCAACGGCGTTCACATAAACGGGCGGGGCAACGGGCTTTCTACATTCAAGGTCGACCCAGGGAAAACTTACAAGCTCCGGATTTCGAATGTGGGACTGTCAACGACGTTAAACTTCAGGATCCAGGGCCACAAGATGAAGCTGGTGGAAGTTGAAGGATCCCACACAATTCAGAACGTCTATGACTCCCTGGATATCCATGTGGGTCAGTCTTGTTCGGTGCTCATAACTGCAAACCAGGTTCCCAAAGACTACTACATAGTTGCATCCACGCGCTTCACAACTCCTGTGTTAAATGGAGTGGCTCTTCTGCGCTACAGCAACTCCAGGCAACCGGCCTCTGGCCCCCTACCTCCCGGTCCTACTATTCAGATCGACTGGTCTATCAACCAGGCGAAGTCCATCAGATGGAATTTGACGGCCAACGCAGCTCGCCCCAATCCACAGGGTTCCTATCATTACGGCCTCATAAAGCCTTCGAGAACTATCATCCTGGCCAATTCGGCTCCCATCATTAACGGAAAGCAGCGATACGCAGTAAATGGCGTCTCCTTCTTGCCTCTCGATACGCCCCTGAAACTAGCGGACTATTTCAAAATCCAGGGAGTATTCAATTTGGGTACCCTCCCTGATTACCCCAGAGGAGGAGGTGCGTACCTCCAGGCTGCAGTCATGTCGGGCCAGTTCAGGTCATTTATTGAGATCGTGTTCCAGAACAACGAAAACACAATTCAGTCCTGGCATGTAGATGGCTATTCCTTCTTCGTGGCGGGAATGGAGGGTGGACAATGGAATCCCGCTAGTAGGAAGAGCTACAATCTGTTCGATGCAGTTTCTCGCTCCACTACACAGGTATATCCCCAGTCTTGGACTGCAATTTTAGTGATGCTGGACAATGCGGGGATGTGGAACATAAGGTCTGGGATGTGGGCAAGGCAGTACTTGGGGCAGCAGTTCTACATGAAAGTTGCAGGAGCTGAGATGCTCGACGAATACTCTGTTCCTCGAAACGCCCTTATGTGCGGGAGAGCCAGAGGCCAGCACCCCCGCCCATAGATGCCTTAATCGGCCCTTTATTGTTGTTCATCGTGATTCTCAGTGCTGTTGTTTTAATTCAATGCAAAGCTTTTGGTCACAGATGGTGACTATTGCTGGTTTTAACGAAGAATTTCTTGTTCTTCTTCATCACTGTAATATGCCATTGCAGGTGTGCTGTCAGTTTTAAGTCGAGAGGTTTGTTCTGTAAAACCCAGCCTCCCTGGTACGAAACAAATTAAACTTGTTCACATGGGAAGGAATTGGACATTGTGATCTTGGCAAACAGCTGGTTGAGTAATAAAATTATTATTTTTCA

Ace file of the UniGene sp_v3.0_unigene7773

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9RXJ3_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	copper ion binding	GO:0005507	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Lipocalin	IPR002345	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22010.1	sks4 SKU5 similar 4 chr4:11663429-11666463 FORWARD LENGTH=541	68%
RefSeq	Arabidopsis thaliana	NP_193932.1	protein SKU5 similar 4 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002332613.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWT1

Fln msg:

Fln protein: MPLVTLRFMSRGKMGFSQRILAVICLVWFASAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLDVVTNDNVIINVFNYLNEPFLLTWNGIQQRRNSWQDGVLGTNCPILPRRNFTYKFQVKDQIGTYFYFPSTALHRAAGGFGGLAIASRSVIPVPYPTPNGEYTALIGDWYKLNHAVLRRWLDNGKALGMPNGVHINGRGNGLSTFKVDPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDSLDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTPLKLADYFKIQGVFNLGTLPDYPRGGGAYLQAAVMSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWNPASRKSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAEMLDEYSVPRNALMCGRARGQHPRP*

Protein Length: 554

Fln nts: GATGGCCATGATGGAAGTTTCGGATTCCTCTGGCAGCTCGGCTTTAAT_-_ATGCCCCTTGTTACTTTGAGATTCATGTCCAGAGGGAAAATGGGGTTCTCGCAGAGGATACTGGCAGTGATCTGTCTGGTGTGGTTTGCCTCTGCTGGGGTTCGAACCGAGGACGCTTACAAGTACTTTACATGGACTGTCACATATGGGACTATTTATCCCATGGGTGTCCCTCAGCAGGGGATCTTAATCAACGGCCAGTTTCCTGGACCCCAACTCGATGTTGTGACGAACGATAATGTTATTATCAATGTTTTTAACTATCTGAACGAGCCTTTTTTGCTTACATGGAATGGAATCCAGCAACGAAGAAATTCGTGGCAAGATGGAGTGCTGGGAACCAATTGTCCAATACTTCCCCGCAGAAACTTCACTTACAAATTTCAAGTCAAGGATCAGATCGGCACCTACTTTTATTTTCCTTCCACGGCTCTGCACAGGGCTGCTGGGGGATTTGGAGGTTTGGCCATTGCTAGCAGGTCTGTTATCCCTGTTCCGTACCCCACTCCTAATGGGGAATACACCGCTTTGATCGGAGACTGGTACAAGCTTAATCACGCGGTTCTTCGAAGATGGCTTGATAATGGAAAAGCTCTCGGCATGCCCAACGGCGTTCACATAAACGGGCGGGGCAACGGGCTTTCTACATTCAAGGTCGACCCAGGGAAAACTTACAAGCTCCGGATTTCGAATGTGGGACTGTCAACGACGTTAAACTTCAGGATCCAGGGCCACAAGATGAAGCTGGTGGAAGTTGAAGGATCCCACACAATTCAGAACGTCTATGACTCCCTGGATATCCATGTGGGTCAGTCTTGTTCGGTGCTCATAACTGCAAACCAGGTTCCCAAAGACTACTACATAGTTGCATCCACGCGCTTCACAACTCCTGTGTTAAATGGAGTGGCTCTTCTGCGCTACAGCAACTCCAGGCAACCGGCCTCTGGCCCCCTACCTCCCGGTCCTACTATTCAGATCGACTGGTCTATCAACCAGGCGAAGTCCATCAGATGGAATTTGACGGCCAACGCAGCTCGCCCCAATCCACAGGGTTCCTATCATTACGGCCTCATAAAGCCTTCGAGAACTATCATCCTGGCCAATTCGGCTCCCATCATTAACGGAAAGCAGCGATACGCAGTAAATGGCGTCTCCTTCTTGCCTCTCGATACGCCCCTGAAACTAGCGGACTATTTCAAAATCCAGGGAGTATTCAATTTGGGTACCCTCCCTGATTACCCCAGAGGAGGAGGTGCGTACCTCCAGGCTGCAGTCATGTCGGGCCAGTTCAGGTCATTTATTGAGATCGTGTTCCAGAACAACGAAAACACAATTCAGTCCTGGCATGTAGATGGCTATTCCTTCTTCGTGGCGGGAATGGAGGGTGGACAATGGAATCCCGCTAGTAGGAAGAGCTACAATCTGTTCGATGCAGTTTCTCGCTCCACTACACAGGTATATCCCCAGTCTTGGACTGCAATTTTAGTGATGCTGGACAATGCGGGGATGTGGAACATAAGGTCTGGGATGTGGGCAAGGCAGTACTTGGGGCAGCAGTTCTACATGAAAGTTGCAGGAGCTGAGATGCTCGACGAATACTCTGTTCCTCGAAACGCCCTTATGTGCGGGAGAGCCAGAGGCCAGCACCCCCGCCCATAG___ATGCCTTAATCGGCCCTTTATTGTTGTTCATCGTGATTCTCAGTGCTGTTGTTTTAATTCAATGCAAAGCTTTTGGTCACAGATGGTGACTATTGCTGGTTTTAACGAAGAATTTCTTGTTCTTCTTCATCACTGTAATATGCCATTGCAGGTGTGCTGTCAGTTTTAAGTCGAGAGGTTTGTTCTGTAAAACCCAGCCTCCCTGGTACGAAACAAATTAAACTTGTTCACATGGGAAGGAATTGGACATTGTGATCTTGGCAAACAGCTGGTTGAGTAATAAAATTATTATTTTTCA

Fln Alignment:

Contig7773___MGFSQRILAVICLVWFASAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLXXXXXXXXXXXXXXYLNEPFLLTWNGIQQRRNSWQDGVLGTNCPILPRRNFTYKFQVKDQIGTYFYFPSTALHRAAGGFGGLAIASRSVIPVPYPTPNGEYTALIGDWYKLNHAVLRRWLDNGKALGMPNGVHINGRGNGLSTFKVDPGKTYKLRISNVGLSTTLNFRIQGHKMKLVEVEGSHTIQNVYDSLDIHVGQSCSVLITANQVPKDYYIVASTRFTTPVLNGVALLRYSNSRQPASGPLPPGPTIQIDWSINQAKSIRWNLTANAARPNPQGSYHYGLIKPSRTIILANSAPIINGKQRYAVNGVSFLPLDTPLKLADYFKIQGVFNLGTLPDYPRGGGAYLQAAVMSGQFRSFIEIVFQNNENTIQSWHVDGYSFFVAGMEGGQWNPASRKSYNLFDAVSRSTTQVYPQSWTAILVMLDNAGMWNIRSGMWARQYLGQQFYMKVAGAEMLDEYSVPRNALMCGRARGQHPRP
A9NWT1______________MGFSQRILAVICVVWITAAGVRTEDAYKYFTWTVTYGTIYPMGVPQQGILINGQFPGPQLNVVTNDNVIINVFNYLNEPFLLSWNGIQQRRNSWQDGVLGTSCPIPPRRNFTYKFQAKDQIGTYFYFPSTLLHKAAGGFGGLAIASRSVISIPYPTPAGEYTALIGDWYKTNHAVLRRWLDSGRALGMPNGVHINGRGKGLSTFKVDPGRTYRLRISNVGLSTSLNFRIQGHKMKLVEVEGSHTVQNVYDSLDLHVGQSCSVLITADQAPKDYYIVASTRFTNPVLYGVALLRYSNSRQPASGPLPPGPTTQIDWSLSQARSIRWNLTANAARPNPQGSYHYGLIKPARTITLANSAPIINGKQRYAVNGVSFMPPDTPLKLADYFKIQGVFNLGTISDYPRGGGGYLQTAVMSGQFRSFIEIVFQNDENTIQSWHIDGYSFFVAGMDGGQWSPASRKGYNLFDAVSRSTTQVYPNSWTAVLLMLDNAGMWNVRSEIWARQYLGQQFYMKVAGFAGQDEYIVPRNALMCGRARGRHTRP

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
188			66	33	0.997452
189			33	66	0.997452
322	33		66		1.0
363	83			16	0.994512
497		16	75		0.99999
608			88	11	0.923564
611		11	88		0.923564
820	83		16		0.994512
1009		83		16	0.994512
1067		12		87	0.992554
1190	14		85		0.993533
1227		14		85	0.993533
1275		80		20	0.995493
1277		80	20		0.995493
1281		80	20		0.995493
1302	20		80		0.995493
1307			25	75	0.996473
1312		75	25		0.996473
1313		75	25		0.996473
1319			33	66	0.997452
1400			75	25	0.996473
1401	75		25		0.996473
1402			25	75	0.996473
1446	25		75		0.996473
1516	20		80		0.995493
1569		11	88		0.923564
1575			88	11	0.923564
1578		10		90	0.90298
1579			90	10	0.90298
1584		88		11	0.923564
1585	88	11			0.923564
1587		11	88		0.923564
1588			88	11	0.923564
1616	88			11	0.923564
1651		11		88	0.923564
1654		11		88	0.923564
1731	80		20		0.995493
1888			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain