SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7729

Length: 2007 nt

UniGene Fasta

>sp_v3.0_unigene7729
ATGGGGATGCTCGTATGGGGATGCCGAAACACGCCGAGAAGATGGGGGAGACGAAAAAGAGAAGGCTAAGGCATTCGCTGGTTCATCTATTTCTCTGTACACCAAATGACATGATCGCCTTCGCGTGCCACTGAGAACATGAAGATGAGGGCGCCTTCCAAAATGTTGAGTATAGCCGCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTCAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATATATAGGGAAGAGAAGAATCTTATTGACTTGTACATTATACTTCTGCGATTTTCAAGTTTAATCACAGAAACTATACCACATCATCAAGACTATCAAACATCCTATCCAAAGGAGAAGGCAGAGTACAGAAAGAAACTATTGAATGTTGTGAGTGAGCTGGAAGCACTAAAACCAGTGGTGCAACGACAAGTTGATGAACTGAACAAAACATATGCCAGTTCATCCTCTTCCAGAGGAGCTAGTGATGCTTCTTTGGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGAAAATGAGAAGGAGGGTTATGGGAGCATTGGAGCGAATGGTACATCGCAAAATTCATGGAAGGCTAATGGTCTTAGCAGGGATCGGTGGCTATCCTCTAACCGAATTGAAGACCGGTTCAACAAGCTAACTTTTTCTATACCTCCACCAAAGGAAGAAACATTATCAAGACACTCCTTGCTAGGACCAAATGGACTCCGTGGTCAATGGCAAGCACCCATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAACTGGACAAAATAATCTTCCAATAATAGAGGCAGGCAGTTTGTCTACATCTCAAAGCACTGGACCAGAATTATTTCCTTCATTGGAAGCTAATTCAACGCCTCAAGTGAATGAGTTGTCATCTCTTTCCACATATGGCTCCGTTGAGACTTCTATTATTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTCCTTGCTCCTGTACAAAACTTAGCTGCTGGACTGGACGCATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGACCTGCAAAATTGTTACAAGATGATCTGGCAAAGTCTAAAAGTCCGCAAAATGTACAAATTTCAGTTAAAATGATGGATGAGTTCATGAACCTTGCCAAGTCCAATACTCAAAAAAATTTGGAAACATGCGGTGTTCTTGCAGGGTCACTTAAAAAACGAACATTTTTTGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGACAAGCGTTCTCTTTTCCCTCTTGGATGGATTCATACGCATCCTTCACAGAATTGCTTTATGTCATCGGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCTGAAGCTATTGCTATTGTCATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCAGATCCTGCAGGTGTGAATGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCACGAAGAACCTCCGGATGGTAGCCCAATATATGAACATTGTTCTCATGTCTATCTAAATTCAAATTTAAGATATGATGTGATAGATCTTCGGTGATATTATAAGGAGTTGTATCATTGAGGTATTTAGCGTCATTTCCTGAAAGCTACCAGTGATTACTTCACTAGTGGTGATCTCTGTTTGATTTCATCCCTATATATTTGTATGTGCTATGAATTTTATTTCTTCATTTGTTCATTCCAAATGAGCACATACTTTGTGTAAACATTTACTGGCGATTATTTTGTTGGAAAAAAATAGATTGTATTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGCACCTGTTTCATTTATACTAATATAAATTCATGGGATTATTTTCAATGAC

Ace file of the UniGene sp_v3.0_unigene7729

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMSH-like ubiquitin thiolesterase 1 [Arabidopsis thaliana] sp\|Q8VYB5.1\|AMSH1_ARATH RecName: Full=AMSH-like ubiquitin thiolesterase 1; AltName: Full=Deubiquitinating enzyme AMSH1 gb\|AAL60033.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20241.1\| unknown	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Amsh, putative	-	-	1.458e-13	-

Source	Gene names
Sma3	AT1G10600; At1g10600; At1g48790; B1088D01.3; B1111E11.40; CHLREDRAFT_101854; F11I4_4; GSVIVT00002705001; GSVIVT00017706001; GSVIVT00033104001; OSJNBa0041C07.38; Os01g0338200; Os01g0499300; Os01g0661500; OsI_01747; OsI_03146; OsI_31163; OsJ_01608; OsJ_0191

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G48790.1	AMSH1 associated molecule with the SH3 domain of STAM 1 chr1:18043925-18047427 REVERSE LENGTH=507	50%
RefSeq	Arabidopsis thaliana	NP_564533.1	AMSH-like ubiquitin thiolesterase 1 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002316018.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR98

Fln msg: your sequence is longer than subject: 524 - 118

Fln protein: MKMRAPSKMLSIAASTQKVDVDNRMSLRYYYRIADNMLKQANIYREEKNLIDLYIILLRFSSLITETIPHHQDYQTSYPKEKAEYRKKLLNVVSELEALKPVVQRQVDELNKTYASSSSSRGASDASLEWPPRRNQVFLTYENEKEGYGSIGANGTSQNSWKANGLSRDRWLSSNRIEDRFNKLTFSIPPPKEETLSRHSLLGPNGLRGQWQAPISGTRVQYPSHGDLTPIEIPSFEQTGQNNLPIIEAGSLSTSQSTGPELFPSLEANSTPQVNELSSLSTYGSVETSIIPNIVRQPSPPPVLAPVQNLAAGLDALTHVSHLNVADPRPGPAKLLQDDLAKSKSPQNVQISVKMMDEFMNLAKSNTQKNLETCGVLAGSLKKRTFFVTTLIIPKQESTSDSCQTMNEEEIYDVQDKRSLFPLGWIHTHPSQNCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDTTKTYGIFHLSDPAGVNVIKQCQQRGFHPHEEPPDGSPIYEHCSHVYLNSNLRYDVIDLR*

Protein Length: 525

Fln nts: ATGGGGATGCTCGTATGGGGATGCCGAAACACGCCGAGAAGATGGGGGAGACGAAAAAGAGAAGGCTAAGGCATTCGCTGGTTCATCTATTTCTCTGTACACCAAATGACATGATCGCCTTCGCGTGCCACTGAGAAC_-_ATGAAGATGAGGGCGCCTTCCAAAATGTTGAGTATAGCCGCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTCAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATATATAGGGAAGAGAAGAATCTTATTGACTTGTACATTATACTTCTGCGATTTTCAAGTTTAATCACAGAAACTATACCACATCATCAAGACTATCAAACATCCTATCCAAAGGAGAAGGCAGAGTACAGAAAGAAACTATTGAATGTTGTGAGTGAGCTGGAAGCACTAAAACCAGTGGTGCAACGACAAGTTGATGAACTGAACAAAACATATGCCAGTTCATCCTCTTCCAGAGGAGCTAGTGATGCTTCTTTGGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGAAAATGAGAAGGAGGGTTATGGGAGCATTGGAGCGAATGGTACATCGCAAAATTCATGGAAGGCTAATGGTCTTAGCAGGGATCGGTGGCTATCCTCTAACCGAATTGAAGACCGGTTCAACAAGCTAACTTTTTCTATACCTCCACCAAAGGAAGAAACATTATCAAGACACTCCTTGCTAGGACCAAATGGACTCCGTGGTCAATGGCAAGCACCCATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAACTGGACAAAATAATCTTCCAATAATAGAGGCAGGCAGTTTGTCTACATCTCAAAGCACTGGACCAGAATTATTTCCTTCATTGGAAGCTAATTCAACGCCTCAAGTGAATGAGTTGTCATCTCTTTCCACATATGGCTCCGTTGAGACTTCTATTATTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTCCTTGCTCCTGTACAAAACTTAGCTGCTGGACTGGACGCATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGACCTGCAAAATTGTTACAAGATGATCTGGCAAAGTCTAAAAGTCCGCAAAATGTACAAATTTCAGTTAAAATGATGGATGAGTTCATGAACCTTGCCAAGTCCAATACTCAAAAAAATTTGGAAACATGCGGTGTTCTTGCAGGGTCACTTAAAAAACGAACATTTTTTGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGACAAGCGTTCTCTTTTCCCTCTTGGATGGATTCATACGCATCCTTCACAGAATTGCTTTATGTCATCGGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCTGAAGCTATTGCTATTGTCATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCAGATCCTGCAGGTGTGAATGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCACGAAGAACCTCCGGATGGTAGCCCAATATATGAACATTGTTCTCATGTCTATCTAAATTCAAATTTAAGATATGATGTGATAGATCTTCGGTGA___TATTATAAGGAGTTGTATCATTGAGGTATTTAGCGTCATTTCCTGAAAGCTACCAGTGATTACTTCACTAGTGGTGATCTCTGTTTGATTTCATCCCTATATATTTGTATGTGCTATGAATTTTATTTCTTCATTTGTTCATTCCAAATGAGCACATACTTTGTGTAAACATTTACTGGCGATTATTTTGTTGGAAAAAAATAGATTGTATTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGCACCTGTTTCATTTATACTAATATAAATTCATGGGATTATTTTCAATGAC

Fln Alignment:

Contig7729___MNEEEIYDVQDKRSLFPLGWIHTHPSQNCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDTTKTYGIFHLSDPAGVNVIKQCQQRGFHPHEEPPDGSPIYEHCSHVYLNSNLRYDVIDLR
A9NR98______________MNEEEIYDVQDKRSLFPLGWIHTHPSQNCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDTTKTYGIFHLSDPSGVNVIKQCQQRGFHPHEEPPDGSPIYEHCSHVYINSNLRYDVIDLR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
129	25	75			0.996473
130		75		25	0.996473
131	75		25		0.996473
132		75	25		0.996473
133			25	75	0.996473
269		16		83	0.994512
554		57		42	1.0
694		18		81	0.999994
1298	16			83	0.994512
1299	16			83	0.994512
1512			14	85	0.993533
1513		85		14	0.993533
1514	85			14	0.993533
1516			83	16	0.994512
1517			83	16	0.994512
2008	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain