SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7728

Length: 1551 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7728 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipid-translocating ATPase [Arabidopsis thaliana] sp\|Q9LNQ4.2\|ALA4_ARATH RecName: Full=Putative phospholipid-transporting ATPase 4; Short=AtALA4; AltName: Full=Aminophospholipid flippase 4 gb\|AEE29599.1\| phospholipid-translocating ATPase [Arabidops	-	-	0.0	48%
FL-Next	sp=Putative phospholipid-transporting ATPase 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Sma3	Aminophospholipid ATPase	-	-	4.81e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	-

Source	Gene names
Sma3	ALA1; ALA10; ALA11; ALA12; ALA2; ALA3; ALA4; ALA5; ALA6; ALA7; ALA8; ALA9; At1g13210; At1g17500; At1g26130; At1g54280; At1g59820; At1g68710; At1g72700; At3g13900; At3g25610; At3g27870; CHLREDRAFT_172401; CHLREDRAFT_190292; F14G11.10; F1L3.21; F20D21.10; F

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-
Sma3	Golgi vesicle budding	GO:0048194	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17500.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein chr1:6018757-6023201 FORWARD LENGTH=1216	48%
RefSeq	Arabidopsis thaliana	NP_173193.2	phospholipid-translocating ATPase [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002318557.1	aminophospholipid ATPase, partial [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LNQ4

Fln msg: your sequence is shorter than subject: 476 - 1216

Fln protein: VVTLAVTQELVRYDGHKICLAIGDGANDVGMIQKANIGVGISGVEGQQASMAADFSIAQFRFLEQLLLVHGGWCYNRISFMVKYFFYKNFVFGFSIFFCNALTMFSGQSAFQDWFLSLYNVLFTALPVGVVAVLDQDVKSIYRLRYPALYMQGQRNQCFTAWKVTLWLVNGIIQALLCVSVVFLAYSKYSDRENGQMVGIYTVGTTMFTSIVLIVNLQMAITIQYWTWIHHVAIWGECFIWFMFLLLSGELPHGRMIELHKLFISVLAPTYSFYIIVIMGTVIALLPSFAVMSVFRNFFPEDYQIIQEIERNDQRNVSTCTKKTSSELGLELTQPRINGSAASLGFKHAHSSGLFDSRHAIESEVESSREFDSKEPTDTRQLYGSYKSRPTPIEDIQIRHGIFDSRHAIESEVESSREFDSKDLTDTRQLYGSHKSRSTPIENIQRRHGDSLSVASFRMIKIRASSLYRRIFFSR*

Protein Length: 477

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAACTTGTACGCTATGATGGCCATAAAATTTGTTTAGCTATTGGTGATGGTGCGAATGATGTTGGTATGATTCAGAAAGCAAATATTGGTGTTGGCATTAGTGGTGTTGAAGGGCAACAGGCATCTATGGCAGCAGATTTTTCAATAGCACAGTTTCGCTTTCTTGAACAACTTCTTTTGGTTCATGGTGGATGGTGCTATAATCGGATCTCATTCATGGTGAAGTACTTTTTCTACAAGAACTTTGTCTTTGGGTTTTCCATTTTCTTCTGCAATGCATTGACCATGTTCTCGGGACAGTCAGCATTTCAAGATTGGTTTTTATCATTGTACAATGTACTATTTACAGCATTACCTGTTGGTGTGGTAGCCGTTCTTGACCAAGATGTGAAATCAATTTATCGGTTGAGGTATCCAGCTCTCTACATGCAGGGCCAAAGAAATCAATGCTTCACAGCATGGAAAGTAACTCTGTGGCTAGTAAATGGCATTATTCAGGCGCTTCTTTGTGTTTCTGTCGTTTTCCTCGCCTACTCTAAGTACTCTGACAGGGAAAATGGACAAATGGTGGGCATATACACAGTTGGAACAACAATGTTCACAAGCATTGTACTAATTGTGAACCTTCAGATGGCGATCACAATCCAGTATTGGACATGGATTCACCATGTGGCTATTTGGGGAGAATGTTTCATCTGGTTCATGTTTTTGCTACTGTCGGGGGAACTACCACACGGAAGGATGATTGAGCTGCACAAACTTTTTATTTCAGTCCTAGCACCAACTTATAGTTTCTACATTATTGTTATCATGGGAACAGTAATTGCATTGCTCCCTAGTTTCGCAGTTATGTCTGTTTTTAGAAATTTCTTTCCGGAGGATTATCAAATTATACAAGAGATCGAAAGAAATGATCAGAGAAATGTTTCAACTTGCACTAAGAAAACTTCTTCTGAACTAGGATTGGAACTTACACAACCCAGAATAAATGGAAGTGCAGCTTCACTTGGTTTCAAACATGCCCACTCAAGTGGATTATTTGATTCGAGACATGCCATTGAATCGGAAGTGGAATCTTCAAGAGAATTTGATTCAAAAGAACCTACAGATACCCGACAGTTGTATGGTAGCTATAAGAGTAGACCCACGCCTATAGAGGACATACAAATAAGACACGGAATATTTGACTCGAGACACGCCATTGAATCGGAAGTGGAATCTTCAAGAGAGTTTGATTCGAAGGATCTCACAGATACCCGACAGTTGTATGGTAGCCATAAGAGTAGATCCACGCCTATAGAGAACATACAAAGAAGACATGGTGATTCGTTAAGTGTAGCTTCATTTAGAATGATTAAAATTCGAGCTTCAAGCTTGTATAGAAGAATTTTTTTTTCAAGATGA___TATCGGAGAATAAAACTGCCTTAGATGTATTATGGAAGTTATTAAGCAATGACCACCTGGTTTTCTTCCTGACCGTCTTACGAGGCAGCATTTTATATATCATTTGCAAGGTCACAATTTTC

Fln Alignment:

Contig7728___AVTQELVRYDGHKICLAIGDGANDVGMIQKANIGVGISGVEGQQASMAADFSIAQFRFLEQLLLVHGGWCYNRISFMVKYFFYKNFVFGFSIFFCNALTMFSGQSAFQDWFLSLYNVLFTALPVGVVAVLDQDVKSIYRLRYPALYMQGQRNQCFTAWKVTLWLVNGIIQALLCVSVVFLAYSKYSDRENGQMVGIYTVGTTMFTSIVLIVNLQMAITIQYWTWIHHVAIWGECFIWFMFLLLSGELPHGRMIELHKLFISVLAPTYSFYIIVIMGTVIALLPSFAVMSVFRNFFPEDYQIIQEIE
Q9LNQ4______________ALVTRLVKEGTGKITLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSVYNDYYLLLFNVVLTSLPVIALGVFEQDVSSEICLQFPALYQQGKKNLFFDWYRILGWMGNGVYSSLVIFFLNIGIIYEQAFRVSGQTADMDAVGTTMFTCIIWAVNVQIALTVSHFTWIQHVLIWGSIGLWYLFVALYGMMPPSLSGNIYRILVEILAPAPIYWIATFLVTVTTVLPYFAHISFQRFLHPLDHHIIQEIK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
723	80		20		0.995493
849	60	40			1.0
850	60	40			1.0
851		40		60	1.0
853			60	40	1.0
1346	16	83			0.994512
1423	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain