SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7719

Length: 1181 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7719

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3411 domain containing protein	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	Gene names
Sma3	At3g08630; At3g08640; CHLREDRAFT_118714; F17O14.11; GSVIVT00033650001; OSJNBa0085D07.3; Os01g0812900; OsI_04178; OsJ_03840; P0425G02.34; P0432B10.9; PHYPADRAFT_111758; PHYPADRAFT_129468; PHYPADRAFT_25352; PHYPADRAFT_45903; POPTRDRAFT_254540; POPTRDRAFT_28

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Histidine triad (HIT) protein	IPR001310	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G08640.1	Protein of unknown function (DUF3411) chr3:2622992-2624005 FORWARD LENGTH=337	65%
RefSeq	Arabidopsis thaliana	NP_187476.1	uncharacterized protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002323685.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN76

Fln msg: your sequence is shorter than subject: 240 - 359

Fln protein: VEADPEFSFKVLMEELVGVTACCLGDMASRPNLV*MSWTLCFPLLLSAPSSNFVLMYLLAPSAAMSAHTLPGLFSSCPTSHMFETGSFSVLERLGTFVYKGTLFAAVGFAAGLVGTALSNTLISVKKKMDPNFETPNKPPPTLLNASTWAIHMGLSSNLRYQTLNGIEFLLAKGFTPLMFKTSVVVLRCLNNVLGGMSFVVLARLTGSQKVDVAPPSSQEERAKLLLDQGKDLQSEQSA*

Protein Length: 241

Fln nts: AGTAGAAGCAGATCCAGAGTTTTCTTTCAAGGTCCTAATGGAGGAGCTCGTAGGGGTAACTGCATGTTGCCTTGGTGACATGGCATCCAGGCCTAACTTGGTTTGAATGAGCTGGACTTTGTGTTTTCCACTCTTGTTGTCGGCTCCATCGTCCAATTTTGTATTAATGTACTTGTTGGCTCCCTCAGCAGCAATGTCAGCACATACTCTCCCTGGTCTTTTTTCAAGCTGCCCTACAAGCCACATGTTTGAGACAGGATCCTTTAGTGTGCTGGAAAGACTGGGTACCTTTGTTTATAAGGGTACCCTGTTTGCAGCTGTTGGGTTTGCTGCAGGCCTTGTAGGGACTGCATTGTCCAATACACTGATCAGTGTAAAAAAGAAGATGGATCCCAACTTTGAAACCCCAAATAAACCACCCCCCACATTGCTGAACGCGTCCACATGGGCTATTCACATGGGCTTAAGCAGCAATCTCAGGTATCAAACTCTAAATGGCATTGAGTTTTTGTTGGCAAAAGGATTTACTCCATTGATGTTTAAGACTTCAGTGGTTGTGCTTCGATGTCTGAATAATGTACTCGGTGGAATGAGTTTTGTGGTCTTAGCTAGACTAACTGGTTCCCAGAAAGTTGATGTGGCACCACCTTCATCGCAAGAAGAAAGGGCCAAGTTGTTACTAGATCAGGGCAAGGATCTACAATCCGAACAATCTGCTTGA___GCCAGTATGTTATATTAGGTTCTCGAAAATGTTTTAAACTGTTTGGTTTTAGAAGTATACCTAGTTAAAAAGGATAAATAGATAGCCTAATATTAAGAGCCCCTTTATGACGGTAAAGAACAATTTCATGAGCAGAATCTACGCTGTGAAAGTTCTTTGGTTACAGGAAGGTTCAAAAGGCCGGGAGTCCCAAATCATATGCAATATGAAATAGGCTAGCAGATGAATTGTTAGCTTGTTGTGGGACTCTGTTTTCATGTGAGTTGTCACTTACAGTTTTTTATCACTATAGTTTGCACCATGGTTGAGACGAACCAAACCCATGGGCAAGATCCTGGATTACCTAATGCCACAGGATTATTTTAAGCTGTTTTTTCTGAATTTTTAGGTGGAAATAAATGAATTTTTATTCCATGCTAAAGCAAGGTATAAACATTATGGAACGATTGGCATTTCTTCC

Fln Alignment:

Contig7719___VEADPEFSFKVLMEELVGVTACCLGDMASRPNLV*MSWTLCFPLLLSAPSSNFVLMYLLAPSA-AMSA-HTLPGLFSSCPTSHMFETGSFSVLERLGTFVYKXXXXXXXXXXXXXXXXXLSNTLISVKKKMDPNFETPNKPPPTLLNASTWAIHMGLSSNLRYQTLNGIEFLLAKGFTPLMFKTSVVVLRCLNNVLGGMSFVVLARLTGSQKVDVAPPSSQEERAKLLLDQGKDLQSEQSA
A9NN76______________VEADPQFPFKVLMEELVGVSACVLGDMASRPNFGLDELDFVFSTLVVGCILNFVLMYLLAPSSSAMSAAEALPGIFSSCPTSHMFETGAYNVLERLGTFVYKGTVFAVVGFAAGLVGTALSNTLISIRKKMDPNFETPNKPPPTLLNASTWALHMGLSSNFRYQTLNGIEYLLAKGLSPFVFKTSVVVLRCLNNVLGGMSFVILARLTGSQKVDPPLPLIPEEKTK-LLDQDKDLQSNKSA

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
481		66	33		0.997452
482	66		33		0.997452
523	33		66		1.0
758	77	11		11	0.968132
759	77	11	11		0.968132
760			11	88	0.923564
763			11	88	0.923564
765		11		88	0.923564
767	88	11			0.923564
768	88			11	0.923564
804	85		14		0.993533
1091	11			88	0.923564
1097	12		87		0.992554
1106			20	40	1.0
1111		20	80		0.995493
1115	20			80	0.995493
1116	20			80	0.995493
1118	20			80	0.995493
1120		20	80		0.995493
1121	20		80		0.995493
1123			80	20	0.995493
1124			80	20	0.995493
1125	75			25	0.996473
1126	75			25	0.996473
1128		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain