SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7702

Length: 2137 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7702
TATTGGGGCTCTTAGCGCCTAGTTTGCCTTGCCTTGGATCGCTGGTAAGCTGGAACCTTGTCTGGATGACTAGGTGAAGCACTCGAGCACTCTAAGGATCGTGGAAGATACCTGTGCCTGATCATCGATCGGGAAGTTCAAGATCGTAAGAGCGTTTTCAAATCGTCAAAGAAAACCCCAAGGGATGAAAATGGAACGGCAGAACAATAGCAATTTCATGGGCCGTCTCGCCAATTCTGATGTGGGAAAATTTCTGCGCCAAGCGTTTACGAAGGAAAAGGAGCGCAGTGGGTTCGACTCCGAAGAATATAACGATGATGGTCCAGAACCAGAACCAGAATACGGAGGAAAGGACCATCGAGAGATCTATACAAAAGATGGTACTGTTAACAGGTTTGGTAAACTGGCTTTGAAAGGCAAGAGTGGTGGGTGGAAGGCTGCAGCTTTGGTATTAGTAAACCAAGGATTGGCGACTCTGGGATTCTTTGGTGTTGGTGTAAACCTTGTCCTAATTCCTGAACTCGAGTGATTCAACAGAGCAATGCATCCGCAGCAAATGATGTGAGCAAATGGACAGGAACTGTATATATCTTCTCCCTCGTTGGAGCATTTTTGAGTGATTCTTACTGGGGTCGATACCGAACATGTTCTGTTTTTCAGGTCATTTTCACAGTGGGTTTAGTGCTTCTATCCTTGACATCGTATCTGTTCTTAATCAAGCCAGCTGGATGTGGAAGTGCGACAGTAAACTGTGAAAAAGCATCGACTGTTGAGCTTATAGTGTTTTACATGTCGATTTATCTCATAGCTCTAGGGTATGGTGGGTACCAACCCAATATTGCAACATTTGGAGCAGACCAATTTGATGAAATGGATGAAGTTGAAGGCGCTTCAAAAGTAGCATTCTTTAGTTGGTTCTACTTGGCAATGAATCTCGGGCAACTATTCTCAAACTCAATAATTGGTTACTTCGAAAACATTGGCAATTGGGTTTTTGGATTCTGGATGTCGGCAGGGTCAGCCGCATTGGCTTTGATCATATTTTTAGTGGGAACACCTTATTACAGACACTTCAGGCCGGGAGGTAACCCCATTCCTCGTGTTGCCCAAGTTTTTGTGCGGCATTTAGGAAATGGAATGTGAGGTCTCCATCAGATGGTGAGAAACTTTACGAGCTCCAAGACAAGGCCTCCGCAATCAGCGGAAGCAGGAAGATAACGCATAGTGAAGAGTTCAGGTTTCTTGACAAGGCAGCAACGTTAACAGAGGATGACAAAATTTCAGCTGCACCTCACAATCCATGGAGGCTCTGCAGTGTCTCTCAAGTGGAGGAAGTGAAGTGCATCTTGCGCATGCTACCCATTTGGCTATGCACAATTATTTACTCAGCTGTGTTCACCCAAATGGCCTCTTTGTTTGTAGAACAAGGTGCTGCAATGAGAACTACTATAAGTGGTTTTCATATTCCACCTGCAGGGATGTCAATGTTTACCATTCTCTGTATCGCAGCTTGTATAGTGATATACATGAAGGCTCTAGTGCCCTGTGCAATCAAATTTACAGGGAACCCTAATGCTTTCACCGAGTTTCATAGGATGGGTGTTGGGTTGATACTGGCTGTGTTTTCCATGGTTTCAGCTGGTGTGGTTGAAGTGTACCGTCTGAGAATTGTGGACAATTCCCATGCCCAAAACACTCTGGGGATTTTCTGGCAAACTCCTCAATATGCCCTCATTGGTGCGTCTGAAGCATTTATGTATGTTGGGCAGCTGGAGTTTTTCAATGGCCAGGCTCCTGAAGGACTTCGAAGCTTCGGCAGTGCCCTGTGGATGACATCCATCGCCATGGGGAACTATGTGAGCAGCTTGATCGTCACCATTGTAATGGATATCACTAGGAGGAAGAATAAGCCCGGGTGGATCCCGGAAGACCTTAACAGGGGCCATATGGATTGTTTCTGTTTCTTATTGGCATTCCTTACAGCAGTTGACTTTATTGCATATGTGATCTGTGCAAGACGATACAGAGGAATTGCACGTTCCATGGACAACAACGAAGATGATCCACACCAGAGAATATAGATATGTGGGTTTATTCATATGAGGATAGCTTTTTTCAAGATGAATTTCAGAATTTG

Ace file of the UniGene sp_v3.0_unigene7702 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TGF-beta receptor, type I/II extracellular region n=1 Tax=Medicago truncatula RepID=Q2HUR9_MEDTR	-	-	0.0	56%
FL-Next	sp=Putative peptide/nitrate transporter At5g19640; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Sma3	Peptide transporter, putative	-	-	1.875e-19	-

Source	Gene names
Sma3	AT4g21680; At1g62200; At2g02040; At3g54140; At4g21680/F17L22_140; At5g01180; At5g19640; B1065G12.20; B1065G12.21; B1377B10.10; F14H20.11; F17L22.140; F19K23.13; F24B22.100; F5D14.23; F7J8_160; GSVIVT00015776001; GSVIVT00018968001; GSVIVT00021471001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to nitrate	GO:0010167	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	nitrate transport	GO:0015706	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19640.1	Major facilitator superfamily protein chr5:6636460-6638590 FORWARD LENGTH=609	54%
RefSeq	Arabidopsis thaliana	NP_197465.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002299155.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E9B5

Fln msg: Separated hits, possible frame ERROR between 511 and 520, and overlapping frame ERROR between 1119 and 1113,

Fln protein: MKMERQNNSNFMGRLANSDVGKFLRQAFTKEKERSGFDSEEYNDDGPEPEPEYGGKDHREIYTKDGTVNRFGKLALKGKSGGWKAAALVLVNQGLATLGFFGVGVNLVxxxxTRVIQQSNASAANDVSKWTGTVYIFSLVGAFLSDSYWGRYRTCSVFQVIFTVGLVLLSLTSYLFLIKPAGCGSATVNCEKASTVELIVFYMSIYLIALGYGGYQPNIATFGADQFDEMDEVEGASKVAFFSWFYLAMNLGQLFSNSIIGYFENIGNWVFGFWMSAGSAALALIIFLVGTPYYRHFRPGGNPIPRVAxxxxxAFRKWNVRSPSDGEKLYELQDKASAISGSRKITHSEEFRFLDKAATLTEDDKISAAPHNPWRLCSVSQVEEVKCILRMLPIWLCTIIYSAVFTQMASLFVEQGAAMRTTISGFHIPPAGMSMFTILCIAACIVIYMKALVPCAIKFTGNPNAFTEFHRMGVGLILAVFSMVSAGVVEVYRLRIVDNSHAQNTLGIFWQTPQYALIGASEAFMYVGQLEFFNGQAPEGLRSFGSALWMTSIAMGNYVSSLIVTIVMDITRRKNKPGWIPEDLNRGHMDCFCFLLAFLTAVDFIAYVICARRYRGIARSMDNNEDDPHQRI*

Protein Length: 634

Fln nts: TATTGGGGCTCTTAGCGCCTAGTTTGCCTTGCCTTGGATCGCTGGTAAGCTGGAACCTTGTCTGGATGACTAGGTGAAGCACTCGAGCACTCTAAGGATCGTGGAAGATACCTGTGCCTGATCATCGATCGGGAAGTTCAAGATCGTAAGAGCGTTTTCAAATCGTCAAAGAAAACCCCAAGGG_-_ATGAAAATGGAACGGCAGAACAATAGCAATTTCATGGGCCGTCTCGCCAATTCTGATGTGGGAAAATTTCTGCGCCAAGCGTTTACGAAGGAAAAGGAGCGCAGTGGGTTCGACTCCGAAGAATATAACGATGATGGTCCAGAACCAGAACCAGAATACGGAGGAAAGGACCATCGAGAGATCTATACAAAAGATGGTACTGTTAACAGGTTTGGTAAACTGGCTTTGAAAGGCAAGAGTGGTGGGTGGAAGGCTGCAGCTTTGGTATTAGTAAACCAAGGATTGGCGACTCTGGGATTCTTTGGTGTTGGTGTAAACCTTGTCCTxxxxxxxxxAACTCGAGTGATTCAACAGAGCAATGCATCCGCAGCAAATGATGTGAGCAAATGGACAGGAACTGTATATATCTTCTCCCTCGTTGGAGCATTTTTGAGTGATTCTTACTGGGGTCGATACCGAACATGTTCTGTTTTTCAGGTCATTTTCACAGTGGGTTTAGTGCTTCTATCCTTGACATCGTATCTGTTCTTAATCAAGCCAGCTGGATGTGGAAGTGCGACAGTAAACTGTGAAAAAGCATCGACTGTTGAGCTTATAGTGTTTTACATGTCGATTTATCTCATAGCTCTAGGGTATGGTGGGTACCAACCCAATATTGCAACATTTGGAGCAGACCAATTTGATGAAATGGATGAAGTTGAAGGCGCTTCAAAAGTAGCATTCTTTAGTTGGTTCTACTTGGCAATGAATCTCGGGCAACTATTCTCAAACTCAATAATTGGTTACTTCGAAAACATTGGCAATTGGGTTTTTGGATTCTGGATGTCGGCAGGGTCAGCCGCATTGGCTTTGATCATATTTTTAGTGGGAACACCTTATTACAGACACTTCAGGCCGGGAGGTAACCCCATTCCTCGTGTTGCCCAxxxxxxxxxxxxGGCATTTAGGAAATGGAATGTGAGGTCTCCATCAGATGGTGAGAAACTTTACGAGCTCCAAGACAAGGCCTCCGCAATCAGCGGAAGCAGGAAGATAACGCATAGTGAAGAGTTCAGGTTTCTTGACAAGGCAGCAACGTTAACAGAGGATGACAAAATTTCAGCTGCACCTCACAATCCATGGAGGCTCTGCAGTGTCTCTCAAGTGGAGGAAGTGAAGTGCATCTTGCGCATGCTACCCATTTGGCTATGCACAATTATTTACTCAGCTGTGTTCACCCAAATGGCCTCTTTGTTTGTAGAACAAGGTGCTGCAATGAGAACTACTATAAGTGGTTTTCATATTCCACCTGCAGGGATGTCAATGTTTACCATTCTCTGTATCGCAGCTTGTATAGTGATATACATGAAGGCTCTAGTGCCCTGTGCAATCAAATTTACAGGGAACCCTAATGCTTTCACCGAGTTTCATAGGATGGGTGTTGGGTTGATACTGGCTGTGTTTTCCATGGTTTCAGCTGGTGTGGTTGAAGTGTACCGTCTGAGAATTGTGGACAATTCCCATGCCCAAAACACTCTGGGGATTTTCTGGCAAACTCCTCAATATGCCCTCATTGGTGCGTCTGAAGCATTTATGTATGTTGGGCAGCTGGAGTTTTTCAATGGCCAGGCTCCTGAAGGACTTCGAAGCTTCGGCAGTGCCCTGTGGATGACATCCATCGCCATGGGGAACTATGTGAGCAGCTTGATCGTCACCATTGTAATGGATATCACTAGGAGGAAGAATAAGCCCGGGTGGATCCCGGAAGACCTTAACAGGGGCCATATGGATTGTTTCTGTTTCTTATTGGCATTCCTTACAGCAGTTGACTTTATTGCATATGTGATCTGTGCAAGACGATACAGAGGAATTGCACGTTCCATGGACAACAACGAAGATGATCCACACCAGAGAATATAG___ATATGTGGGTTTATTCATATGAGGATAGCTTTTTTCAAGATGAATTTCAGAATTTG

Fln Alignment:

Contig7702___KSGGWKAAALVLVNQGLATLGFFGVGVNLVLxxxTRVIQQSNASAANDVSKWTGTVYIFSLVGAFLSDSYWGRYRTCSVFQVIXXXXXXXXXXXXXXXLIKPAGCGSATVNCEKASTVELIVFYMSIYLIALGYGGYQPNIATFGADQFDEMDEVEGASKVAFFSWFYLAMNLGQLFSNSIIGYFENIGNWVFGFWMSAGSAALALIIFLVGTPYYRHFRPGGNPIPRVAQVxxAAFRKWNVRSPSDGEKLYELQDKASAISGSRKITHSEEFRFLDKAATLTEDDKISAAPHNPWRLCSVSQVEEVKCILRMLPIWLCTIIYSAVFTQMASLFVEQGAAMRTTISGFHIPPAGMSMFTILCIAACIVIYMKALVPCAIKFTGNPNAFTEFHRMGVGLILAVFSMVSAGVVEVYRLRIVDNSHAQNTLGIFWQTPQYALIGASEAFMYVGQLEFFNGQAPEGLRSFGSALWMTSIAMGNYVSSLIVTIVMDITRR-KNKPGWIPEDLNRGHMDCFCFLLAFLTAVDFIAYVICARRYRGIARSMDN
Q3E9B5______________KNGGWTNAIILLVNQGLATLAFFGVGVNLVLxxxTRVMGQGNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATFGADQLDD----DKNSKAAFFSYFYFALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVxxATARKWSVVRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRAAVITENDR-NGTRSNAWRLCSVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNAYVGKFHIPAASMSVFDIFSVFVSTGIYRHIIFPYVRP--------TELMRMGIGLIIGIMAMVAAGLTEIQRLKRVVPGQKESELTILWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGLKNLGSSLCMASMALGNYVSSLMVNIVMAITKRGENSPGWIPENLNEGHMDRFYFLIAALAAIDFVVYLIFAKWYQPISHDEDS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1738	60		40		1.0
1798		60		40	1.0
2011		75	25		0.996473
2064		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1798	1815	TTCTGG TTCTGG TTCTGG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain