SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7697

Length: 1491 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7697

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BcpLH protein [Brassica rapa subsp. pekinensis] gb\|AAT77418.1\| dsRNA-binding protein LH-c [Brassica napus]	-	-	7.0e-13	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	0.0	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ0

Fln msg:

Fln protein: MVPPAQMFKNRLQEYAQKNSLPLPLYEVVNEGQDHLPQFKCTVIINGAKYESLPGFTNKKASQNAAAKAAVEDLEMQGLIVESKEKIRPKGILAEVVRRKNMPPPSYRFTRTFTATVVVNGVSYTGGPSDNQRDAQNKAALEALQAIDPKAAFEVLQANDPQYCNSLPHVEVNAKNDSKQPTAQPDNLASDNQLLEGTESQSAGNGLEKSIVDGAPAPEKDSEKTDVENASAVGHGIEKTKVKDAHEAERGMSDINDAHSVSAPQPHNHFQQDPLSAQQEHLKKETRDTYQDKVHGSKGMQQISQELDLTESISKRSRSESENAEQTSQKRKKNRKETDSTA*

Protein Length: 344

Fln nts: TTGCACCTTCCCTCTCTAAAACCCTAACCGGAGGCGTTACAAAGATACGTTACACTTGGCGAAAAACCAGTGAAATGCTATTATTTATTGTAGCAATGGAAGGAGCTATATAAGGGCAGTTCCGGCAACAAATAGGGCTATCTACACAGAAATTAGGGCAATAATTAGGGAAAATTTAGTCTTGCAGGCGAGCTTTTGTTTTTGGGTTTCTCGTCTCATTTCAGTTCTTGAA_-_ATGGTGCCTCCTGCGCAGATGTTCAAGAACAGATTGCAAGAATATGCACAGAAGAACTCTTTGCCATTGCCTCTCTATGAAGTTGTAAATGAGGGCCAAGACCATCTTCCGCAATTCAAGTGCACTGTAATAATCAATGGGGCAAAGTATGAATCCCTTCCTGGTTTCACCAACAAGAAGGCATCACAGAATGCTGCAGCTAAGGCAGCTGTCGAAGATTTGGAAATGCAAGGGTTGATTGTTGAGTCCAAAGAGAAAATACGGCCTAAAGGTATCCTTGCAGAAGTTGTTAGAAGGAAGAATATGCCGCCTCCGAGTTATCGTTTTACAAGGACTTTTACAGCAACTGTGGTTGTTAATGGGGTTTCCTATACTGGAGGTCCTTCAGACAATCAAAGGGACGCTCAAAACAAGGCTGCACTTGAAGCACTTCAGGCAATCGACCCCAAGGCTGCGTTTGAAGTACTTCAGGCAAACGACCCCCAATATTGTAATTCGTTACCGCATGTTGAAGTTAATGCGAAAAATGATTCCAAACAGCCAACTGCACAACCGGATAACTTGGCATCTGATAATCAGCTATTAGAAGGAACTGAATCTCAATCGGCGGGAAATGGTCTAGAAAAGTCAATTGTCGACGGTGCACCTGCTCCTGAAAAGGACTCAGAGAAGACAGATGTGGAGAATGCATCTGCAGTTGGACATGGTATAGAAAAGACAAAGGTGAAGGATGCCCATGAAGCCGAAAGGGGAATGTCAGATATAAATGATGCACATTCAGTGTCAGCCCCACAGCCTCATAATCATTTTCAACAGGATCCTTTGTCTGCACAACAAGAACATTTGAAAAAGGAGACAAGGGATACCTATCAAGACAAAGTACATGGATCTAAGGGGATGCAGCAAATCAGTCAGGAGCTCGATCTAACTGAATCCATCAGCAAGAGGAGTAGAAGTGAATCTGAGAATGCTGAACAAACTTCTCAAAAAAGGAAAAAGAACAGAAAGGAGACTGATAGCACAGCTTGA___CAAAGCCTAGAGTGTGCATTGTCTCATTCTGCAATAAGACAGTGAAAACTTTCTTCATATTTCCAAATCATTGATTTTTGTCTCAATTCTTGAGCTATTTCGTTTTATTGATTTTAGCATAGAAGGACATTTAGTCAGATTTATTATATTTATAGGACTCAGATTTCTCAGAAACCTCATCATCTTGAAGTTGAAACAAAATGAACTCTTTATGGCTGTTACTCTTGCTA

Fln Alignment:

Contig7697___MFKNRLQEYAQKNSLPLPLYEVVNEGQDHLPQFKCTVIINGAKYESLPGFTXXXXXXXXXXXXXVEDLEMQGL--IVESKEKIRPKGILAEVVRRKNMPPPSY-------XXXXXXXXXXXXNGVSYTGGPSDNQRDAQNKAALEALQAIDPK-AAFEVLQANDPQYCNSLPHVEVN-AKNDSKQPTAQPDNLASDNQLLEGTESQSAGNGLEKSIVDGAPAPEKDSEKTDVENASAVGHGIEKTKVKDAHEAERGMSDINDAHSVSAPQPHNHFQQDPLSAQQEHLKKETRDTYQDKVHGS---KGMQQISQELDLTXXXXXXXXXXXXNAEQTSQKRKKNRKET
A9NUQ0______________MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAAEAAVKKLVNQGLLPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAIDPHYFQAESIINNGSEH----PTEECDVSKSDSKIPA---DNWTSNNQIVGGSDSHLPANCIEKVTVENAPAVEKVSEKRNVENPCGAGEDPENSKVKNAFGAEKSIPNINHASSV----PAKHPQQDPLLARQGQLKEEIADAHPDKQHGSQEVEGKQQGSQEVDLTVSISKRSISESENAEQMSERKKKHKRNT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1224	16		33		1.0
1225			66	33	1.0
1226	33			66	1.0
1294		50	50		1.0
1295	50			50	1.0
1296	66			33	0.997452
1306	33	66			0.997452
1307	66		33		0.997452
1308	33		66		0.997452
1310		33	66		0.997452
1311	66	33			0.997452
1313	66		33		0.997452
1314	66			33	0.997452
1320			33	66	0.997452
1321	33			66	0.997452
1322	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain