SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7695

Length: 955 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7695

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase chain 1 n=41 Tax=Magnoliophyta RepID=NU1M_ARATH	-	-	0.0	94%
FL-Next	sp=NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; Taiwania cryptomerioides. Plastid; Chloroplast.	-	-	0.0	42%

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	nad1;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	IPR001694	-	0.0	-
Sma3	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	IPR018086	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG01275.1	NAD1A, NAD1, ND1 NADH dehydrogenase 1A chrM:318004-318390 REVERSE LENGTH=325	0.0	88%
RefSeq	Arabidopsis thaliana	NP_085565.3	NADH dehydrogenase subunit 1 (mitochondrion) [Arabidopsis thaliana]	0.0	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: G4LAU9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 294 - 368

Fln protein: WATSKGS*CSWIVRIVTTFSRWFEISYERTYFTK*C*FIPFRMAPVVTFMLSLVAWAVVPFDYGMVLSDLDIGILYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLIIITVLICVGSCNLSEIVMAQRQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSSLCTLLFLGGWLPILDLPISKKIPGSIWFSIKVIFFLFLYIWVRAAFPRYRYDQLMGLGWKVFLPLSLAWVVFVSGVLVTFQWLPQ*

Protein Length: 295

Fln nts: ATGGGCAACGTCGAAAGGGTCCTAATGTAGTTGGATTGTTCGGATTGTTACAACCTTTAGCAGATGGTTTGAAATTAGCTATGAAAGAACCTATTTCACCAAGTAGTGCTAATTTATTCCTTTTAGAATGGCTCCAGTGGTTACATTTATGCTAAGTTTGGTTGCTTGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTTGGACATAGGTATACTTTATCTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATAATAGCAGGTTGGTCTAGTAATTCGAAATATGCTTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTCTCTTACGAAGTATCTATTGGTCTTATTATTATTACTGTACTAATATGTGTAGGTTCCTGTAATTTGAGTGAGATTGTCATGGCGCAAAGGCAGATATGGTTTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTTTTTATTTCTTGTCTAGCAGAAACTAATCGAGCTCCTTTTGATCTCCCAGAAGCGGAAGCTGAATTAGTTGCAGGCTATAATGTAGAATATTCTTCGATGGGGTTTGCTCTTTTTTTTCTAGGGGAGTATGCCAATATGATCTTAATGAGCAGTCTATGTACATTGCTCTTTCTAGGAGGTTGGCTGCCTATCCTAGATCTTCCCATTTCCAAGAAGATCCCGGGCTCGATCTGGTTTAGTATAAAGGTGATTTTCTTCCTGTTCTTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTTGGCTGGAAGGTCTTCTTGCCTCTATCATTAGCTTGGGTAGTCTTTGTTTCTGGTGTTCTAGTAACCTTTCAATGGCTCCCTCAATGA___AAGGAAAGTGTCTGAAGAAGCGGGCTACTCCCCGAAAATGCCCGCCCGTAGGTTCCAGTGTTGTTGGGGCAC

Fln Alignment:

Contig7695___FRMAPVVTFMLSLVAWAVVPFDYGMVLSDLDIGILYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLIIITVLICVGSCNLSEIVMAQ-RQIWFGIPLF--PV-LVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSSLCTLLFLGGW-LPILDLPISKK--------IPGSIWFSI-------KVIFFLFLYIWVRAAFPRYRYDQLMGLGWKVFLPLSL
G4LAU9______________FSIGPAVAVIPIFLGYLVIPFGRHIVLIDLSIGVFFWIAISSITPLGLLIAGYGSNNKYSFSGGLRAAAQAISYEIPLALCVLSISLLSNSSSTIDIVEAQCRYGFFGWNLWRQPIGFLAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSFFVTVLYLGGWNLSIPFIPILEHFEWDSISGISGVVNITIGILIILAKAYLFLFISITARWTLPRIRMDQLLDLGWKFLLPIAL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
271	60		40		1.0
273		60	40		1.0
275			80	20	0.995493
277			20	80	0.995493
278	20			80	0.995493
279	20		80		0.995493
280		20	80		0.995493
283		20		80	0.995493
284	80			20	0.995493
285		20	80		0.995493
366		11		88	0.923564
367	11			88	0.923564
392		12		87	0.992554
731		80		20	0.995493
819		81		18	1.0
953	14		85		0.993533
954	33	50			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
360	371	TTA TTA TTA TTA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain