SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7678

Length: 1290 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7678

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDQ4_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	DNA binding protein, putative	-	-	7.096e-21	-

Source	Gene names
Sma3	46C02.5; AHL1; AHL10; AHL11; AHL12; AHL13; AHL14; AHL2; AHL3; AHL4; AHL5; AHL6; AHL7; AHL8; AHL9; AHP1; AHP2; AT1; AT4g00200; AT4g12080; AT4g17950; AT4g22770; AT4g25320; At1g63470; At1g63470/F2K11_14; At1g63480; At2g33620; At2g45850; At2g45850/F4I18.17; A

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45850.1	AT hook motif DNA-binding family protein chr2:18871901-18873457 REVERSE LENGTH=348	45%
RefSeq	Arabidopsis thaliana	NP_850442.1	AT hook motif DNA-binding family protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002320785.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK79

Fln msg: Distance to subject end: 72 aas, your sequence is shorter than subject: 311 - 383

Fln protein: MEGRESMGLSGPGSFGSILHRGVGSPPAGMPTPSSAPAAIHTPAALRPVVSSVIGIASTPNNPSSAPYATESPATVVPHGVNMGVGMAVSVARTEPLKRKRGRPRKYGPDGSMALALAPLSSVQGSFSPTQKRGRGRPPGSGRKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMAFSQQGPRAVCILSANGAISHVTLRQPSTSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGVAGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGPAAAIP

Protein Length: 312

Fln nts: GGATATTTTTGGTACCAGAAGAAGCAGAGATGCAGTGGTAAGCTGAAAGCAAAGCGGGAGATGTTGTAAATGGCGAGCATGCGTGAAGAATGAAAAATGGCTTCCTTGAGTATACATAAGAATATCGTGCTGCACATTAAGGTTTCAAAATACATGTCCGAGCCTTTCAGTGGTCTGCATTTGAGGCTGATACCTTCTCGACTTCTCTGATTTTTATAATTAAATGCACCGCTTCATGGCGGAGGAAGTCACATTTTGAGTGCGTGAAGAGTCTTTGAAGTTTTACTCTGTAAGTCGGTGCTGAAATTGAATCAGAAGGACAAAAACTGTTGGCTGGTTTGAATTTAAAATCTATGC_-_ATGGAGGGCAGAGAATCAATGGGATTGAGCGGACCTGGGTCATTTGGTTCGATTTTACACAGAGGAGTGGGTTCTCCTCCAGCAGGTATGCCCACGCCTTCGTCGGCACCAGCGGCTATACATACCCCGGCTGCATTGCGGCCTGTGGTGAGTTCGGTCATAGGTATAGCGTCCACCCCCAACAATCCTAGTTCTGCTCCCTATGCAACCGAGTCACCAGCTACCGTTGTTCCTCATGGTGTGAACATGGGAGTGGGGATGGCTGTTAGCGTGGCACGGACAGAGCCGCTCAAGCGGAAGAGGGGAAGGCCTAGGAAATATGGGCCTGATGGAAGTATGGCATTGGCCTTAGCTCCATTGTCATCAGTTCAAGGATCATTTTCACCTACACAGAAACGAGGTAGAGGGAGGCCACCGGGTTCTGGTAGGAAGCAGCAGTTGGCTGCTCTTGGGGAATGGCTTGCCGGCTCTGCAGGGATGGGTTTCACGCCTCATGTTATAACAATAGCGGCAGGCGAGGATGCTGCAACCAAAATAATGGCATTCTCCCAACAAGGGCCTAGAGCAGTTTGTATTCTTTCAGCCAACGGTGCAATTTCTCATGTGACACTTCGACAACCATCAACTTCTGGTGGTACCGTAACTTATGAGGGCCGGTTTGAGATACTGTCCTTGTCAGGCTCATTCTTGCTTACAGAGAATGGTGGAACACGAAGTAGAACAGGTGGCCTGAGTGTTTCACTGGCTGGTCCTGATGGCCGTGTTATTGGTGGAGGGGTGGCTGGAATGTTAATGGCAGCCAGTCCAGTGCAGGTGGTCGTAGGAAGCTTCATTTCAAATGGTCGAAAAGCCCAGGCCAAGCCAGTGAATCCTGAACCTTCCATCGCCCAGTCACAGGCAGGGTATTCAGGAGGTCCAGCAGCGGCCATCCCC

Fln Alignment:

Contig7678___MEGRESMGLSGPGSFGSILHRGVGSPPAGMPTPSSAPAAIHTPAALRPVVSSVIGIASTPNNPSSAPYATESPATVVPHGVNMGVGMAVSVARTEXXXXXXXXXXXXXXXXSMALALAPLSSVQGSFSPTQKXXXXXXXXXXXKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMAFSQQGPRAVCILSANGAISHVTLRQPSTSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGVAGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGPAAAIP
B8LK79______________MESRESMGLSGPGSFGAILHRGVSSSPAGMPTPASAPAAIHTPAALRPVVSSVIGVASNPNNPSSSSYATESPATLVPHGVNMGVGMAVSVARTEPLKRKRGRPRKYGPDGSMALALAPLSSVQGSLSPTQKRGRGRPPGSGRKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMSFSQQGPRAVCILSANGAISHVTLRQPATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGVAGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGPAVAIP

SNPs (tot: 4)

Position	A %	C %	G %	Probability
48	87		12	0.992554
50	87		12	0.992554
51	87		12	0.992554
53		87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain