SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7674

Length: 1523 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7674

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pinoresinol-lariciresinol reductase n=1 Tax=Thuja plicata RepID=Q9LD14_THUPL	-	-	0.0	59%
FL-Next	tr=Pinoresinol-lariciresinol reductase; Thuja plicata (Western red-cedar) (Giant arborvitae).	-	-	0.0	63%
Sma3	Pinoresinol-lariciresinol reductase	-	-	5.582e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-CH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.3.1.-	-	4.461e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		4.461e-14	%
Sma3	Phenylalanine metabolism	00360		4.461e-14	%
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361		4.461e-14	%
Sma3	Fluorobenzoate degradation	00364		4.461e-14	%
Sma3	Tryptophan metabolism	00380		4.461e-14	%
Sma3	Xylene degradation	00622		4.461e-14	%
Sma3	Toluene degradation	00623		4.461e-14	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		4.461e-14	%
Sma3	Propanoate metabolism	00640		4.461e-14	%
Sma3	Isoflavonoid biosynthesis	00943		4.461e-14	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		4.461e-14	%
Sma3	Metabolic pathways	01100		4.461e-14	%
Sma3	2'-hydroxyisoflavone reductase.	EC:1.3.1.45	-	5.582e-29	-

Source	KEGGs	Term	e value	Identity
Sma3	Isoflavonoid biosynthesis	00943	5.582e-29	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.582e-29	%
Sma3	Biosynthesis of secondary metabolites	01110	5.582e-29	%

Source	Gene names
Sma3	A622; A622L; AIS1; AT4g13660; AT4g34540; AT4g39230; At1g32100; At1g75280; At1g75290; At1g75300; At1g75300/F22H5_16; At4g13660; At4g34540; At4g39230; BETV6; BETV6.0102; DDCBER1; EGS1; F18A5.50; F22H5.16; F22H5.17; F22H5.18; F3C3.10; GSVIVT00011864001; GSVI

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	pinoresinol reductase activity	GO:0010283	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	leucoanthocyanidin reductase activity	GO:0033788	Molecular Function	-
Sma3	2'-hydroxyisoflavone reductase activity	GO:0047526	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	phenylpropanoid metabolic process	GO:0009698	Biological Process	-
Sma3	lignan biosynthetic process	GO:0009807	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cecropin	IPR000875	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32100.1	ATPRR1, PRR1 pinoresinol reductase 1 chr1:11546472-11547953 REVERSE LENGTH=317	52%
RefSeq	Arabidopsis thaliana	NP_174490.1	pinoresinol reductase 1 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002326577.1	phenylcoumaran benzylic ether reductase -like protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9LD13

Fln msg:

Fln protein: MADNGSQKSRVLIVGGTGYIGKRFVRASLALGHPTYVLYRSAATQNIDKVELLLSFKQSGAHLLQGSLDDHESLVTAVKQADVVISSLAGTIVRNEIIQQLKLVDAIKEAGNIKRFLPSEFGVDPDRHADAMEPVNQVFVDKSKVRRVIEAANIPYTYISANCFARIFLGGLGQFGQGYIPSRETIALYGDGNAKVIWVDEDDIATYTLKTIDDPRTLNRTIYIRPPANILSQKEVVEIWERLIGHPLVKKSISSEEWLKSMEGKPLGLQIAIAHAHQIFYEGCTANFEIEPKEGEASELYPDVKYTTVESFLKRYI*

Protein Length: 319

Fln nts: ATTGTTCTCAAAGTCTATCCATCCATTACAGACTGTGACCAAAATCTGCCCACAACCCCCACTCAGCACTAGTGCAAAATAATACTCTAAAGTCAAATTCTTCCAGTCAAAGCTCTTTGCCGTTGAAAACGCCATAGATTAAAAAGTTCATTTTTATTATTTAAATGAACAACAGAATATAATTGAGTATTGAGTTAGCTTTGGATCTGATCATTAGCCAAAATTTCTGTGTGCTCCCCAGA_-_ATGGCAGACAATGGATCCCAAAAGAGCAGAGTTCTCATTGTGGGAGGCACAGGGTACATAGGCAAAAGGTTTGTAAGGGCAAGCTTGGCTCTTGGTCATCCCACTTACGTTCTGTACCGTTCTGCAGCGACTCAGAATATTGACAAAGTGGAGCTCCTCCTTTCCTTCAAACAATCCGGTGCCCACCTTCTGCAGGGTTCATTGGATGATCATGAGAGCCTGGTGACTGCTGTGAAGCAAGCGGATGTTGTGATATCATCTCTGGCAGGAACTATTGTCCGCAATGAGATAATTCAACAACTGAAGCTAGTGGATGCTATCAAGGAAGCTGGCAATATCAAGCGGTTTCTCCCTTCAGAGTTTGGGGTGGATCCAGACAGACATGCAGATGCCATGGAGCCAGTAAATCAAGTTTTTGTTGACAAGAGCAAGGTGAGGCGAGTAATAGAGGCAGCCAATATTCCATACACTTACATCTCAGCGAACTGCTTTGCTAGAATCTTTTTAGGTGGACTTGGACAGTTTGGTCAAGGTTACATTCCTTCTCGAGAAACAATAGCTTTGTATGGAGATGGCAATGCTAAAGTAATATGGGTAGATGAGGATGACATTGCAACTTATACCTTGAAAACAATAGATGATCCCCGCACCCTGAATAGAACAATATACATCCGTCCACCAGCCAATATCCTCTCACAGAAGGAGGTTGTGGAGATCTGGGAAAGGCTTATAGGTCACCCTCTGGTGAAGAAGAGCATTTCATCCGAAGAATGGCTCAAGTCTATGGAAGGTAAGCCTCTAGGACTACAGATTGCAATTGCTCATGCCCACCAAATATTCTATGAAGGTTGTACTGCAAATTTTGAGATTGAACCTAAAGAGGGAGAAGCCTCAGAGCTTTATCCAGATGTCAAATACACAACTGTGGAATCCTTCTTGAAGCGTTATATATAA___GCTTTAATTATTTGGGTCTTGAGATCATAATAATGCTTTCTTTTCTGAAGTCTAGTATTTCTTAATGACTTGGCGTTTAAAGAGTCAGTGTAATTGCTAAGTTAAAATTTGGCCACTGTGTCTACTCTTGCTGGATAAAATTGATTTGGAATCTAATTTTAATGGCAAGAAGTCTGGTTTTGTCTCTCATGTCTCTTGCAAGAGAGAACTAATGAGCGTTTAACAACAGGAGGCATAAAACTATGACATTCTCCAATGTTACTCTTCTGATTTTCGTCAAATTTACTTGTCAGTGGCAACAACTTAGAAATAAAATTTCTTTGATTC

Fln Alignment:

Contig7674___QKSRVLIVGGTGYIGKRFVRASLALGHPTYVLYRSAATQNIDKVELLLSFKQSGAHLLQGSLDDHESLVTAVKQADVVISSLAGTIVRNEIIQQLKLVDAIKEAGNIKRFLPSEFGVDPDRHADAMEPVNQVFVDKSKVRRVIEAANIPYTYISANCFARIXXXXXXXXXXXYIPSRETIALYGDGNAKVIWVDEDDIATYTLKTIDDPRTLNRTIYIRPPANILSQKEVVEIWERLIGHPLVKKSISSEEWLKSMEGKPLGLQIAIAHAHQIFYEGCTANFEIEPKEGEASELYPDVKYTTVESFLKRYI
Q9LD13______________ESSRVLIVGGTGYIGRRIVKASIALGHPTFILFRKEVVSDVEKVEMLLSFKKNGAKLLEASFDDHESLVDAVKQVDVVISAVAGNHMRHHILQQLKLVEAIKEAGNIKRFVPSEFGMDPGLMEHAMAPGNIVFIDKIKVREAIEAASIPHTYISANIFAGYLVGGLAQLGRVMPPS-EKVILYGDGNVKAVWVDEDDVGIYTIKAIDDPHTLNKTMYIRPPLNILSQKEVVEKWEKLSGKSLNKINISVEDFLAGMEGQSYGEQIGISHFYQMFYRGDLYNFEIGPNGVEASQLYPEVKYTTVDSYMERYL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
479	12		87		0.992554
557		11		88	0.923564
605	12			87	0.992554
629	88		11		0.923564
656	12			87	0.992554
658	12			87	0.992554
662	50			50	1.0
741	90		10		0.90298
742			10	90	0.90298
751	10		90		0.90298
753	10		90		0.90298
754		10	90		0.90298
798	83		16		0.994512
817			83	16	0.994512
914	16	83			0.994512
916	16		83		0.994512
918		83		16	0.994512
1026	80		20		0.995493
1039		80		20	0.995493
1091		50		50	1.0
1202	80			20	0.995493
1213		20		80	0.995493
1292	20		80		0.995493
1314	16		83		0.994512
1379			18	81	0.999994
1487	14	85			0.993533
1491			57	42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain