SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7667

Length: 1147 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7667

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] ref\|NP_851037.2\| Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] gb\|AAM20555.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AAN15620.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AED	-	-	0.0	48%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	57%
Sma3	Lysosomal alpha-mannosidase, putative	-	-	8.24e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-mannosidase.	EC:3.2.1.24	-	5.767e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Other glycan degradation	00511		5.767e-15	%

Source	Gene names
Sma3	AT3G26720; At3g26720; At5g13980; At5g66150; GSVIVT00017734001; GSVIVT00018035001; GSVIVT00036759001; GSVIVT00037951001; GSVIVT00037953001; LOC_Os10g05069; LOC_Os11g32260; OSJNAa0029P06.5; OSJNBa0029P06.16; Os10g0140200; Os11g0525600; OsI_32713; OsI_36309;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	alpha-mannosidase activity	GO:0004559	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	mannosidase activity	GO:0015923	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	mannose metabolic process	GO:0006013	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13980.1	Glycosyl hydrolase family 38 protein chr5:4508626-4514334 FORWARD LENGTH=1024	51%
RefSeq	Arabidopsis thaliana	NP_851037.2	Glycosyl hydrolase family 38 protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002318770.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SWM3

Fln msg: your sequence is shorter than subject: 348 - 992

Fln protein: MSRKQVTQSVIKGEIVSEVYQQLSPWVSQVVRLYKNADDAEIDFMVGPIPIDDDLGKEVITRFTTNIPSNKEFFTDSNGRDFLKRVRNYRKDWNLSVHELIAGNYYPLNLGIYLKDNETEFSLLVDRAVGGSSIMDGELELMLHRRLLHDDDKGVAENLNETVCFNNNRTCEGLTVQGKIYLSVNPVEKASEWRRTKGQKALLPLQISFATIPDGELNQIKKPKYSALAEGYELPPNVAILTLQELDDRQTLLRLAHLYEVEESAEFSNSATIDLYKLFPNHKVKKIVELNLSAVKEKSQMRRLNWKVEGNENTFPGITNRPAMKDGDHVIELFPFEIRTFQLEFDV*

Protein Length: 349

Fln nts: AATGTCCAGAAAACAGGTTACACAGTCAGTTATAAAGGGAGAAATAGTGAGTGAAGTATATCAACAACTTTCCCCATGGGTGTCACAGGTAGTTAGATTGTACAAAAATGCAGATGACGCTGAAATCGATTTCATGGTTGGGCCAATTCCGATTGATGATGACTTGGGGAAGGAGGTCATCACACGATTCACAACAAATATTCCATCAAACAAGGAGTTCTTCACTGATTCCAATGGTCGAGATTTTCTGAAGAGAGTAAGGAATTATAGAAAGGATTGGAACTTGAGCGTACATGAACTAATTGCAGGAAATTACTACCCTTTGAATCTAGGCATCTACCTGAAGGACAACGAGACAGAGTTTTCTTTGCTTGTTGATCGTGCTGTTGGGGGTTCAAGCATTATGGATGGAGAACTAGAGCTTATGTTACATAGGCGGTTGCTCCATGATGATGACAAGGGTGTGGCAGAAAATCTGAATGAAACTGTATGCTTTAATAACAACAGGACATGTGAAGGCTTAACTGTTCAAGGCAAAATCTATCTAAGTGTCAATCCTGTGGAAAAAGCTTCAGAATGGAGGCGTACAAAGGGACAGAAAGCACTGCTTCCTCTACAAATCTCGTTTGCCACAATACCAGACGGTGAACTAAATCAGATAAAGAAACCTAAATATTCAGCTTTGGCAGAAGGCTATGAGCTACCACCTAATGTTGCCATCCTTACACTCCAGGAACTGGATGATCGACAAACCTTACTGCGTCTAGCACATCTTTATGAGGTTGAGGAAAGTGCCGAATTTTCGAATTCTGCAACAATTGATCTCTATAAATTGTTTCCAAACCACAAGGTTAAAAAAATTGTGGAGCTTAATCTTAGTGCAGTTAAAGAGAAGTCACAAATGAGAAGATTGAATTGGAAAGTGGAAGGAAATGAGAATACTTTCCCTGGGATTACTAATAGACCAGCAATGAAGGATGGAGACCACGTTATAGAGTTATTTCCGTTTGAAATAAGGACTTTTCAACTTGAGTTTGATGTTTAA___CAATTTATTTTCTTTTAAGGCAGGGAAAATTGTGATATAAATTTGGGAATAATTCGGTATCTATTTGTTAGATTTTAATTACTAAGTTATGTTTATTTTTTT

Fln Alignment:

Contig7667___VTQSVIKGEIVSEVYQQLSPWVSQVVRLYKNADDAEIDFMVGPIPIDDDLGKEVITRFTTNIPSNKEFFTDSNGRDFLKRVRNYRKDWNLSVHELIAGNYYPLNLGIYLKDNETEFSLLVDRAVGGSSIMDGXXXXXXXXXXXXXXDKGVAENLNETVCFNNNRTCEGLTVQGKIYLSVNPVEKASEWRRTKGQKALLPLQISFATIPDGELNQIKKPKYSALAEGYELPPNVAILTLQELDDRQTLLRLAHLYEVEESAEFSNSATIDLYKLFPNHKVKKIVELNLSAVKEKSQMRRLNWKVEGNENTFPGITNRPAMKDGDHVIELFPFEIRTFQL
A9SWM3______________VQMTVFRGPLVEEVHQQFSPWVSQVTRVYTNVEHAEIQFTVGPIPIDDSNGKEIVTKITTPLKTEKSFYTDSNGRDFLKRVRDYRPDWDLEVIEPVAGNYYPLNLGIYMKDNESDVSVLVDRALGGSSIEDGQLEIMLHRRLLYDDHRGVAEALNETVCSNDGH-CEGLTVQGKFYINISPSEVAAEWRRIKGQQILMPLQLSFS---DGNTEPLRTPRFSALKVGYELPLNIAVMTLQELNEEEVLLRLANLFEVDESTRLSRTSTVDLLNLFPNHKIKEVKEVTLSANQEKSEVKKLEWNIEASEASPKILRGRP-LRDDETIVEIAPMEIRTFLL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
943	14			85	0.993533
1017			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain