SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7653

Length: 2126 nt

UniGene Fasta

>sp_v3.0_unigene7653
CGTCGTGACCTTGGCTGTCACTCAAGGAGTGGGTTATTGGGTGTTTTAAGTTTCTGCCCAGCTGCTACCACGGGCCACTTCGTAGGCCTTGATTTTTTTTTGTGTATTGGAGCACAGGTGGAGTGTGGTCTTACATGAGTGAAGGGTTGGTTTTCAAAGGTATTATTTGAGCACACGCCCATATGGATTGCAAACCAGTTACCTGGATGGATTGTTGCAGAGTATTTATTTTGACATGGGTGTTGTTCAACATGGTTTCAATGATTGGCTGTGCATCAAACTGTGAAATGGATTGTCCCTTGGGGGATGTGGAATCATTCATCAATAACTTTGGGGATCCATATGGGACCCCGATAGATCACTTTGGAGTTGCAGAGGGGACGAAGGGTGTGGAGAGTGTTGCTGCTCAGGAGATTGTGGCGTTGGCCAATATGCCTGAAAATGTTGAGTGGTTGAAGAGCATAAGGAGAAGAATCCATGAGCACCCGGAGCTTGCTTATGAGGAATTTGAGACAAGTAAGCTCATTAGGCAGGAGCTTGATCGAATGAATATTAGCTATAGGTACCCTGTGGCCAGAACAGGTGTGGTGGCTTCCATTGGTAATGGAAATCCTCCTTTCGTAGCTCTTCGAGCAGACATGGATGCTTTGCCAATTCAGGAGGCAGTTGAGTGGGAACACAAAAGCAAATCCCCAGGGAAAATGCACGCCTGTGGACATGATGCACATGTTACCATGCTTCTTGGTGGCGCAAAGATTTTGCAACAACGTCAGCATTTGTTACAGGGAACTGTCGTATTACTCTTCCAGCCTGCAGAGGAATCAGGCGTAGGATCAAAAAGAATGATAGAAGAGGGAGCACTGGAAAATGTGGAAGGCATATTCGCTATGCATGTTTCAAGCGATTATCCTACATCTGTGATTGGTTCGAAACCTGGGCCCTTACTCGCTGGCTGTGGGTTCTTCAAGGCAGTAATAACTGGGAAAGGTGGGCATGCAGCAATCCCACAACATTCAATTGATCCTATATTGGCAGGTTCTGCTTCTGTCGTCAGTTTACAACATCTCGTTTCACGTGAAGCCAATCCCTTGGATTCTCAGGTAGTATCTGTTGCCGCATTCAATGGAGGTGGTGCACTCAATGTCATTCCAGACTCAGTTACTATTGGTGGCACATTTCGGGCTTTCTCAAATGACAGCTTTTACAAACTCAGGCAGAGAATAGAAGAGGTTATTTTAGGACAAGCTGCTGTCCATAGGTGCACTGCAGTTGTAGATTTCTTTGAAAAAGAGGATCAGTTTTATCCTCCAACTTTCAATGACAGGGACATGCACAAACATGTACACAGAGTTGCGGCTGATGTAGTGGGTCTCCATAATTTTAAGATAGTGCCTCCCATGATGGGTGCAGAGGACTTTGCCTTCTACACAGAGGTTACTCCTGCTGCCTTCTTTTATATTGGAATGAGGAACGAGGCCATTGGGTCAATTCATTCAGGACATTCTCCTTACTTTATGATTGATGAAAATATTCTCCCTACTGGTGCTGCAATGCATGCTGCAATAGCTGAAAGATTCCTTAATGAACATAAATCCAGGACCACAAAACTCTGAGAACCTTGCAGTACTATCACGTTTCCTTTAATTTCGTACATTTTCTGCTCTTAGGAAAGGCAGATAACCTTCAGGATGCATTCAACTATAGCAACCAATGTACAGTTCCTTCTTTCATGTGTCATAGGCTGTCTACAAGATCACTCAGAAGTGATCTGTAAATCGAAATTGATATAGATGAATTTCTTCCTCCCAACATTATGATAGAAGGCCTACGTGAAAGGTTCCTTACACAAGAGGGAGTAAATAACTCGATGCTTTACCGGAGGGGACAGATAACTGAATGTCTTAGTGAAAAATTAAATGGCAATATGTAATTGTTTCATTGTTTTTACTTCAGGGTCAATTTTTGGTAATACAAGATAGCAAGTTACTATGTTATGTTTTACAACAATAGGGATCTTTTTCTCCGATCTATTTGTTAAAGTCAGCCTCACTTTTTGCAGATAAATAATTCTCAAATGTTATTTTACAATTACTAAAGTGAACATCAACTTTATTCTTTCTTCTGAG

Ace file of the UniGene sp_v3.0_unigene7653

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	auxin conjugate hydrolase [Medicago truncatula]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Amidohydrolase	IPR017439	-	-
Sma3		IPR010168	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G44350.1	ILL6 IAA-leucine resistant (ILR)-like gene 6 chr1:16834749-16838201 REVERSE LENGTH=464	63%
RefSeq	Arabidopsis thaliana	NP_175086.1	IAA-amino acid hydrolase ILR1-like 6 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002302231.1	iaa-amino acid hydrolase 9 [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVQ4

Fln msg:

Fln protein: MDCKPVTWMDCCRVFILTWVLFNMVSMIGCASNCEMDCPLGDVESFINNFGDPYGTPIDHFGVAEGTKGVESVAAQEIVALANMPENVEWLKSIRRRIHEHPELAYEEFETSKLIRQELDRMNISYRYPVARTGVVASIGNGNPPFVALRADMDALPIQEAVEWEHKSKSPGKMHACGHDAHVTMLLGGAKILQQRQHLLQGTVVLLFQPAEESGVGSKRMIEEGALENVEGIFAMHVSSDYPTSVIGSKPGPLLAGCGFFKAVITGKGGHAAIPQHSIDPILAGSASVVSLQHLVSREANPLDSQVVSVAAFNGGGALNVIPDSVTIGGTFRAFSNDSFYKLRQRIEEVILGQAAVHRCTAVVDFFEKEDQFYPPTFNDRDMHKHVHRVAADVVGLHNFKIVPPMMGAEDFAFYTEVTPAAFFYIGMRNEAIGSIHSGHSPYFMIDENILPTGAAMHAAIAERFLNEHKSRTTKL*

Protein Length: 478

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAGTGGGTTATTGGGTGTTTTAAGTTTCTGCCCAGCTGCTACCACGGGCCACTTCGTAGGCCTTGATTTTTTTTTGTGTATTGGAGCACAGGTGGAGTGTGGTCTTACATGAGTGAAGGGTTGGTTTTCAAAGGTATTATTTGAGCACACGCCCAT_-_ATGGATTGCAAACCAGTTACCTGGATGGATTGTTGCAGAGTATTTATTTTGACATGGGTGTTGTTCAACATGGTTTCAATGATTGGCTGTGCATCAAACTGTGAAATGGATTGTCCCTTGGGGGATGTGGAATCATTCATCAATAACTTTGGGGATCCATATGGGACCCCGATAGATCACTTTGGAGTTGCAGAGGGGACGAAGGGTGTGGAGAGTGTTGCTGCTCAGGAGATTGTGGCGTTGGCCAATATGCCTGAAAATGTTGAGTGGTTGAAGAGCATAAGGAGAAGAATCCATGAGCACCCGGAGCTTGCTTATGAGGAATTTGAGACAAGTAAGCTCATTAGGCAGGAGCTTGATCGAATGAATATTAGCTATAGGTACCCTGTGGCCAGAACAGGTGTGGTGGCTTCCATTGGTAATGGAAATCCTCCTTTCGTAGCTCTTCGAGCAGACATGGATGCTTTGCCAATTCAGGAGGCAGTTGAGTGGGAACACAAAAGCAAATCCCCAGGGAAAATGCACGCCTGTGGACATGATGCACATGTTACCATGCTTCTTGGTGGCGCAAAGATTTTGCAACAACGTCAGCATTTGTTACAGGGAACTGTCGTATTACTCTTCCAGCCTGCAGAGGAATCAGGCGTAGGATCAAAAAGAATGATAGAAGAGGGAGCACTGGAAAATGTGGAAGGCATATTCGCTATGCATGTTTCAAGCGATTATCCTACATCTGTGATTGGTTCGAAACCTGGGCCCTTACTCGCTGGCTGTGGGTTCTTCAAGGCAGTAATAACTGGGAAAGGTGGGCATGCAGCAATCCCACAACATTCAATTGATCCTATATTGGCAGGTTCTGCTTCTGTCGTCAGTTTACAACATCTCGTTTCACGTGAAGCCAATCCCTTGGATTCTCAGGTAGTATCTGTTGCCGCATTCAATGGAGGTGGTGCACTCAATGTCATTCCAGACTCAGTTACTATTGGTGGCACATTTCGGGCTTTCTCAAATGACAGCTTTTACAAACTCAGGCAGAGAATAGAAGAGGTTATTTTAGGACAAGCTGCTGTCCATAGGTGCACTGCAGTTGTAGATTTCTTTGAAAAAGAGGATCAGTTTTATCCTCCAACTTTCAATGACAGGGACATGCACAAACATGTACACAGAGTTGCGGCTGATGTAGTGGGTCTCCATAATTTTAAGATAGTGCCTCCCATGATGGGTGCAGAGGACTTTGCCTTCTACACAGAGGTTACTCCTGCTGCCTTCTTTTATATTGGAATGAGGAACGAGGCCATTGGGTCAATTCATTCAGGACATTCTCCTTACTTTATGATTGATGAAAATATTCTCCCTACTGGTGCTGCAATGCATGCTGCAATAGCTGAAAGATTCCTTAATGAACATAAATCCAGGACCACAAAACTCTGA___GAACCTTGCAGTACTATCACGTTTCCTTTAATTTCGTACATTTTCTGCTCTTAGGAAAGGCAGATAACCTTCAGGATGCATTCAACTATAGCAACCAATGTACAGTTCCTTCTTTCATGTGTCATAGGCTGTCTACAAGATCACTCAGAAGTGATCTGTAAATCGAAATTGATATAGATGAATTTCTTCCTCCCAACATTATGATAGAAGGCCTACGTGAAAGGTTCCTTACACAAGAGGGAGTAAATAACTCGATGCTTTACCGGAGGGGACAGATAACTGAATGTCTTAGTGAAAAATTAAATGGCAATATGTAATTGTTTCATTGTTTTTACTTCAGGGTCAATTTTTGGTAATACAAGATAGCAAGTTACTATGTTATGTTTTACAACAATAGGGATCTTTTTCTCCGATCTATTTGTTAAAGTCAGCCTCACTTTTTGCAGATAAATAATTCTCAAATGTTATTTTACAATTACTAAAGTGAACATCAACTTTATTCTTTCTTCTGAG

Fln Alignment:

Contig7653___MDCKPVTWMDCCRVFILTWVLFNMVSMIGCASNCEMDCPLGDVESFINNFGDPYGTPIDHFGVAEGTKGVESVAAQEIVALANMPENVEWLKSIRRRIHEHPELAYEEFETSKLIRQELDRMNISYRYPVARTGVVASIGNGNPPFVALRADMDALPIQEAVEWEHKSKSPGKMHACGHDAHVTMLLGGAKILQQRQHLLQGTVVLLFQPAEESGVGSKRMIEEGALENVEGIFAMHVSSDYPTSVIGSKPGPLLAGCGFFKAVITGKGGHAAIPQHSIDPILAGSASVVSLQHLVSREANPLDSQVVSVAAFNGGGALNVIPDSVTIGGTFRAFSNDSFYKLRQRIEEVILGQAAVHRCTAVVDFFEKEDQFYPPTFNDRDMHKHVHRVAADVVGLHNFKIVPPMMGAEDFAFYTEVTPAAFFYIGMRNEAIGSIHSGHSPYFMIDENILPTGAAMHAAIAERFLNEHKSRTTKL
A9NVQ4______________MDWRAVTWMDCCRAFILIWVLFNMISMIVYASNCEMDCPLGDVESLVNNFEDQYGIPIDHFGVAEGTRGVGSVAAQEIVEVANLPENVEWLKRIRRRIHEHPELAYEEFETSKLIRHELDQMNVSYRYPVARTGVVASIGNGNPPFVALRADMDALPIQEAVEWEHKSKSPGKMHACGHDAHVTMLLGGAKILQQRQHLLQGTVILLFQPAEESGAGSKRMIAEGALENVEGIFAMHVSSDYPTSVIGSKPGPLLAGCGFFKAVITGKGGHAAIPQHSIDPILAGSASVVSLQHLVSREANPLDSQVVSVAAFNGGGALNVIPDSVTIGGTFRAFSNESFYRLRQRIEEVILGQAAVHRCTAVVDFFEKEDQFYPPTFNDKDMHKHVHRVAADVVGVHNFKIVPPMMGAEDFVFYTEVTPAAFFYIGMRNEAIGSTRSGHSPYFMIDENVLPTGAAMHAAIAERFLNEHKFRTKKL

SNPs (tot: 3)

Position	C %	G %	T %	Probability
1813		75	12	0.975346
1989	12		87	0.999964
2062	16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain