SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7641

Length: 2381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7641
AGCTTCGCCCAGGCAGTACCTCGGCCTGTTCAATGCTACCAACAATGGGAACGCTTCTAATCATGTATTCGCGGTGGAGTTTGATACCGATAAAGATTTTGAGTTTCAGGATATTAATGATAACCATGTGGGTATCGATATCAACAGTCTGATTTCGAATATGTCTGCACCAGCAGGGTACATGACCAGTAATGGGACAGTTCAGGTATTTGATCTTAAATCTCAGAGGAGCATTCAGTGTTGGATAGACTTTGATGGTGCAGAGAGTCTGCTTAATGTAAGTATTGTACCAGGAGGGATGCCGAAGCCTGATCGGCCACTGATATCTTTTCATGTTAATCTCTCTGATGTCCTTCTTGATAAGATGTATGCAGGGTTTTCAGCAGCTACAGGGCTGCTTTCTAGTGCTCATCGCGTTCTGGGATGGAGTTTCAGCATGAATGGGCCTGCACAGGACCTTGCACTCTCAAAGCTTCCTCAGATTACATCTGCAAATTCTATGGTGAAGACTAGAAGGTTCACGGTTGGGGTATCCATAGCTGCTGTAAGTATCACGGTTATTGCAATTCTGACAGCAGTTCACCTTATTAGGAGGATTCGACAGACTGAGGTGATTGAAGAATGGGAGCTTGAATGTGGGCCTCATAGATACCCATACAGTGAACTGAAAGAGGCCACAAAGGGATTCAGGGACAAAGAGCTGTTGGGTTTTGGGGGTTTTGGAAGAGTTTATAAAGGTGTTATTCCCAGCACTGGGCTGGAAGTTGCGGTGAAGCGGGTTTCTCATGAATCCAAACAAGGGGTGAGGGAATTCATTGCAGAAATTGCGAGCATTGGCCGGCTTCGACACAGGAACTTAGTTCCGCTTCAAGGTTGGTGTAGGCATAAGGAAGAGCTTCTGCTTGTGTATGATTACATGCCAAATGGTAGCCTTGACAAGCTCTTGTTTGACAGTACAGAGAATATGCTGAGTTGGGCGCAGAGGTTTAGAATTTTGAAGGGAGTTGCTTCCGCTTTGCTTTATCTTCATGAGGAATGGGAGCAGACAGTAGTCCATAGAGATGTCAAAGCAAGCAATGTGTTATTAGATGAAGTTTTGAATGCTAGGTTGGGAGACTTTGGGCTTGCTCGTTTATATGAACATGGTTCGAATCCTCAGACCACCCATATAGTTGGAACTATTGGCTACCTTGCTCCAGAGCTTTCTCGTACTGGTAAGGCAACAACAAGCACTGATGTGTTTGGATTTGGGGCTTTATTGCTTGAAGTAGCTTGTGGAAGAAGGCCGGTTGATACGAAGAGGTCTCCTGAAGAATTAGTCTTGGTGGACTGGGTTTGGGAGTTGCATTCCAATGGGAAACTTTTGCAGGCAGCTGATCCTAGACTTCTTAACGAGTACCCTGTTGAAGAAGTTGGGCTTGTTCTTGAACTGGGTTTGCTGTGTTCTCATCCTCACCCTGAAGCTAGACCTAATATGAGACAGGTAGTGCAAATGCTTGCTGGCGATAAACCACCTCCTGTGGTGAATTCTGACCCCCCTTGGGCAGCAGACACACCTTTGATGTGTAAGCGGTTTGATGATTTCAATACTACCTCCCATGCTACCACAAGCTCATATGGGAAGCGAACTATCACATCTGATGGGACATCCCCAGTTGCATTGCTAGTAGGAAGAGATTGAGAGGTCTCTAGCAAACACAAGCCTTTGAATCAGATACCAAAATTCTTATTTTGGTCTGCTGGTGCATGATCTGATGTTTTCTTCTTTATTGGATTATCTAATGATGAGTTTCTGCATTCTTACACAAACTAGAAGGTGGACCTCCAGAGATACAGAGCATGGACGTTTCCTTTTGATATACAAAAGAAATAAAGGAAGAAGCTAACAGATCTGCAATCTGTAACTATCAGGTGTAACCAAACTATGTGCAGCTTAACTGTATGTCTTCAAATTGTTTGACACAACAAATATTATGTAACATTTGTTTATGATTTTTCTTCATTTGACCCACTTTGTTATCAGAGAAAATGGCTTGATTCTGAGATTGCTTTTCACAACATCAGCCTCTTCAGTTCTGTGTCAAAATCTTCGAAGGTTTTGATAAGCTACCAGCCTACATTCAACTCATGTAGAATTATTTATTCTACTCATTTGGTGTAAGGTATGATCCGACAGACCTGCTACTTAGAGCATAGCATCATATGAGTAAATTATTCTCAAATTTTAGGCATTTTGGGCATAAATAGTTATAGAGGTTGATTCTCTGAAGTTTATTTAACAAAATGGAGGGCGATGGCATATTGAATCATATTCACCAAGCAAGTTTTAATCCAGTAGTCCTGCTGTTTTAAACATAATATCATTTGTGTAATTTATTACT

Ace file of the UniGene sp_v3.0_unigene7641 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Putative receptor-type protein kinase LRK1	-	-	2.552e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	4.576e-12	-

Source	Gene names
Sma3	AT4g02410; AT4g02420; AT4g04960; AT4g28350; AT4g29050; At1g15530; At1g70110; At1g70130; At2g29220; At2g37710; At2g43690; At2g43700; At3g08870; At3g45330; At3g45410; At3g45420; At3g45430; At3g45440; At3g53810; At3g59700; At3g59730; At3g59750; At4g02410; At

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transmembrane receptor protein serine/threonine kinase activity	GO:0004675	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3		GO:0006350	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	focal adhesion assembly	GO:0048041	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3		IPR001899	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	RNA polymerase Rpb7, N-terminal	IPR005576	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55550.1	Concanavalin A-like lectin protein kinase family protein chr3:20600019-20602073 REVERSE LENGTH=684	55%
RefSeq	Arabidopsis thaliana	NP_191114.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002315211.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: your sequence is shorter than subject: 560 - 636

Fln protein: ASPRQYLGLFNATNNGNASNHVFAVEFDTDKDFEFQDINDNHVGIDINSLISNMSAPAGYMTSNGTVQVFDLKSQRSIQCWIDFDGAESLLNVSIVPGGMPKPDRPLISFHVNLSDVLLDKMYAGFSAATGLLSSAHRVLGWSFSMNGPAQDLALSKLPQITSANSMVKTRRFTVGVSIAAVSITVIAILTAVHLIRRIRQTEVIEEWELECGPHRYPYSELKEATKGFRDKELLGFGGFGRVYKGVIPSTGLEVAVKRVSHESKQGVREFIAEIASIGRLRHRNLVPLQGWCRHKEELLLVYDYMPNGSLDKLLFDSTENMLSWAQRFRILKGVASALLYLHEEWEQTVVHRDVKASNVLLDEVLNARLGDFGLARLYEHGSNPQTTHIVGTIGYLAPELSRTGKATTSTDVFGFGALLLEVACGRRPVDTKRSPEELVLVDWVWELHSNGKLLQAADPRLLNEYPVEEVGLVLELGLLCSHPHPEARPNMRQVVQMLAGDKPPPVVNSDPPWAADTPLMCKRFDDFNTTSHATTSSYGKRTITSDGTSPVALLVGRD*

Protein Length: 561

Fln nts: AGCTTCGCCCAGGCAGTACCTCGGCCTGTTCAATGCTACCAACAATGGGAACGCTTCTAATCATGTATTCGCGGTGGAGTTTGATACCGATAAAGATTTTGAGTTTCAGGATATTAATGATAACCATGTGGGTATCGATATCAACAGTCTGATTTCGAATATGTCTGCACCAGCAGGGTACATGACCAGTAATGGGACAGTTCAGGTATTTGATCTTAAATCTCAGAGGAGCATTCAGTGTTGGATAGACTTTGATGGTGCAGAGAGTCTGCTTAATGTAAGTATTGTACCAGGAGGGATGCCGAAGCCTGATCGGCCACTGATATCTTTTCATGTTAATCTCTCTGATGTCCTTCTTGATAAGATGTATGCAGGGTTTTCAGCAGCTACAGGGCTGCTTTCTAGTGCTCATCGCGTTCTGGGATGGAGTTTCAGCATGAATGGGCCTGCACAGGACCTTGCACTCTCAAAGCTTCCTCAGATTACATCTGCAAATTCTATGGTGAAGACTAGAAGGTTCACGGTTGGGGTATCCATAGCTGCTGTAAGTATCACGGTTATTGCAATTCTGACAGCAGTTCACCTTATTAGGAGGATTCGACAGACTGAGGTGATTGAAGAATGGGAGCTTGAATGTGGGCCTCATAGATACCCATACAGTGAACTGAAAGAGGCCACAAAGGGATTCAGGGACAAAGAGCTGTTGGGTTTTGGGGGTTTTGGAAGAGTTTATAAAGGTGTTATTCCCAGCACTGGGCTGGAAGTTGCGGTGAAGCGGGTTTCTCATGAATCCAAACAAGGGGTGAGGGAATTCATTGCAGAAATTGCGAGCATTGGCCGGCTTCGACACAGGAACTTAGTTCCGCTTCAAGGTTGGTGTAGGCATAAGGAAGAGCTTCTGCTTGTGTATGATTACATGCCAAATGGTAGCCTTGACAAGCTCTTGTTTGACAGTACAGAGAATATGCTGAGTTGGGCGCAGAGGTTTAGAATTTTGAAGGGAGTTGCTTCCGCTTTGCTTTATCTTCATGAGGAATGGGAGCAGACAGTAGTCCATAGAGATGTCAAAGCAAGCAATGTGTTATTAGATGAAGTTTTGAATGCTAGGTTGGGAGACTTTGGGCTTGCTCGTTTATATGAACATGGTTCGAATCCTCAGACCACCCATATAGTTGGAACTATTGGCTACCTTGCTCCAGAGCTTTCTCGTACTGGTAAGGCAACAACAAGCACTGATGTGTTTGGATTTGGGGCTTTATTGCTTGAAGTAGCTTGTGGAAGAAGGCCGGTTGATACGAAGAGGTCTCCTGAAGAATTAGTCTTGGTGGACTGGGTTTGGGAGTTGCATTCCAATGGGAAACTTTTGCAGGCAGCTGATCCTAGACTTCTTAACGAGTACCCTGTTGAAGAAGTTGGGCTTGTTCTTGAACTGGGTTTGCTGTGTTCTCATCCTCACCCTGAAGCTAGACCTAATATGAGACAGGTAGTGCAAATGCTTGCTGGCGATAAACCACCTCCTGTGGTGAATTCTGACCCCCCTTGGGCAGCAGACACACCTTTGATGTGTAAGCGGTTTGATGATTTCAATACTACCTCCCATGCTACCACAAGCTCATATGGGAAGCGAACTATCACATCTGATGGGACATCCCCAGTTGCATTGCTAGTAGGAAGAGATTGA___GAGGTCTCTAGCAAACACAAGCCTTTGAATCAGATACCAAAATTCTTATTTTGGTCTGCTGGTGCATGATCTGATGTTTTCTTCTTTATTGGATTATCTAATGATGAGTTTCTGCATTCTTACACAAACTAGAAGGTGGACCTCCAGAGATACAGAGCATGGACGTTTCCTTTTGATATACAAAAGAAATAAAGGAAGAAGCTAACAGATCTGCAATCTGTAACTATCAGGTGTAACCAAACTATGTGCAGCTTAACTGTATGTCTTCAAATTGTTTGACACAACAAATATTATGTAACATTTGTTTATGATTTTTCTTCATTTGACCCACTTTGTTATCAGAGAAAATGGCTTGATTCTGAGATTGCTTTTCACAACATCAGCCTCTTCAGTTCTGTGTCAAAATCTTCGAAGGTTTTGATAAGCTACCAGCCTACATTCAACTCATGTAGAATTATTTATTCTACTCATTTGGTGTAAGGTATGATCCGACAGACCTGCTACTTAGAGCATAGCATCATATGAGTAAATTATTCTCAAATTTTAGGCATTTTGGGCATAAATAGTTATAGAGGTTGATTCTCTGAAGTTTATTTAACAAAATGGAGGGCGATGGCATATTGAATCATATTCACCAAGCAAGTTTTAATCCAGTAGTCCTGCTGTTTTAAACATAATATCATTTGTGTAATTTATTACT

Fln Alignment:

Contig7641___ASPRQYLGLFNATNNGNASNHVFAVEFDTDKDFEFQDINDNHVGIDINSLISNMSAPAGYMTSNGTVQVFDLKSQRSIQCWIDFDGAESLLNVSIVPGGMPKPDRPLISFHVNLSDVLLDKMYAGFSAATGLLSSAHRVLGWSFSMNGPAQDLALSKLPQITSANSMVKTRRFTVGXXXXXXXXXXXXXXXXVHLIRRIRQTEVIEEWELECGPHRYPYSELKEATKGFRDKELLGFGGFGRVYKGVIPSTGLEVAVKRVSHESKQGVREFIAEIASIGRLRHRNLVPLQGWCRHKEELLLVYDYMPNGSLDKLLFDSTENMLSWAQRFRILKGVASALLYLHEEWEQTVVHRDVKASNVLLDEVLNARLGDFGLARLYEHGSNPQTTHIVGTIGYLAPELSRTGKATTSTDVFGFGALLLEVACGRRPVDTKRSPEELVLVDWVWELHSNGKLLQAADPRLLNE--YPXXXXXXXXXXXXLCSHPHPEARPNMRQVVQMLAGDKPPP
A9NVC0______________AQPSQYLGLLNLTTNGQAYNHLFAVEFDTIMNVEFNDPDGNHVGVDVNNLVSVQTETAGYWNGEEFHEL-NLRSGRNIQAWIDYDHLQSRLDVTMTVVGLPRPQKPLISLQIDLHNVLQEKMYVGFSAATGLFMEDHYVLAWSFTTQGTAPPLDVSCLRSFANMYTEPLSRGFTVGVTVASLVLFLLAIAAAVFL-KRVIKRETIEEWEEEYWPHRFTYKELSIATSRFRDENVLGYGGFGMVYKGVLPSSGQEVAVKCITTEFTEGMKGFVAEISSMGRLRHRNLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTTVLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRDIKSSNVLLDSELNGRLGDFGLARLYDHAENPETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEKVLKLGLLCSHPEPESRLGMRHVCQILDGEAPIP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
860		90	10		0.90298
862		90		10	0.90298
863		90	10		0.90298
969		83		16	0.999991
974			16	83	0.999991
975	16			83	0.999991
980	72	27			1.0
981	81	18			0.999994
984			77	22	0.999999
986			85	14	0.993533
987		14		85	0.993533
990	12			87	0.992554
991		85		14	0.993533
993			12	87	0.992554
995	87		12		0.992554
998	87	12			0.992554
1001		12		87	0.992554
1003	12			87	0.992554
1012	12		87		0.992554
1013	12	75		12	0.975346
1014		12		87	0.992554
2146		33		66	0.997452
2150	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain