SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7620

Length: 1691 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7620

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitogen-activated protein kinase 1 [Medicago sativa]	-	-	0.0	48%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	59%
Sma3	Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative	-	-	2.422e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 2.7.11.1.	EC:2.7.1.37	-	4.262e-14	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	9.632e-20	-

Source	Gene names
Sma3	ANP1; ANP2; ANP3; AT4g08480; At1g09000; At1g53570; At1g54960; At1g63700; At3g06030; At3g07980; At3g13530; At4g08470; At4g08480; At4g08500; At4g12020; At5g66850; B0103C08-B0602B01.10; CHLREDRAFT_121660; CHLREDRAFT_98709; DUPR11.32; F14C21.49; F16J13.90; F1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	kinase binding	GO:0019900	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	MAPK cascade	GO:0000165	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	plasma membrane organization	GO:0007009	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08500.1	MEKK1, ATMEKK1, MAPKKK8, ARAKIN MAPK/ERK kinase kinase 1 chr4:5404272-5407062 REVERSE LENGTH=608	48%
RefSeq	Arabidopsis thaliana	NP_192590.1	mitogen-activated protein kinase kinase kinase 1 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002306242.1	predicted protein [Populus trichocarpa]	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9RYD0

Fln msg: your sequence is longer than subject: 314 - 277

Fln protein: MANMLDKELEISQRSQRINPWTYAISQSPSSTSTSPGSHLFPVSSPKCPRNWTKGKVLGKGSFGTVYEGLNMDDGSFFAVKVSDEQTTGPEIQQEVDVLRRLNHPNIVRYLGSSVKDGHLCIFLELGKDSLRSVLDKYKRFEENMIRIYTRQILQGLEYLHQQNTVHRDIKCSNILVYPNGQVKLADFGVAKQMSQSLANSCKGTLLYMAPEMIEPPADSRRYGLAVDIWSLGCTIIEMADGKGPWSHLKGFSFFFKVSQGELPPIPDILSSEAKDFIRSCLKWKPEERANVSELLHHPFVTNAPAFTPHFFP*

Protein Length: 315

Fln nts: AAATTGCCCTTGCCACCT_-_ATGGCAAATATGTTAGATAAGGAGCTTGAGATCAGTCAAAGATCTCAGCGAATTAATCCCTGGACGTACGCCATTTCTCAATCCCCAAGCTCTACCAGCACATCACCGGGTTCTCATTTATTTCCTGTTTCTTCACCAAAATGTCCAAGAAACTGGACCAAGGGCAAAGTTTTAGGGAAGGGTTCTTTCGGAACTGTCTATGAAGGATTAAATATGGATGATGGCAGCTTTTTTGCTGTAAAGGTCAGTGATGAGCAGACTACTGGGCCCGAGATACAGCAGGAGGTAGATGTTCTCAGGAGATTGAATCATCCAAACATTGTGCGTTACCTGGGTAGCTCTGTTAAGGATGGTCATTTGTGTATTTTTCTCGAGCTCGGGAAGGACTCATTGCGATCTGTACTGGACAAATACAAACGATTTGAAGAGAACATGATCCGAATTTACACACGTCAGATATTACAGGGCCTTGAATATCTGCACCAGCAAAATACTGTCCACAGAGATATTAAGTGTTCCAATATATTGGTTTATCCTAATGGGCAAGTTAAACTTGCTGACTTTGGTGTTGCTAAACAGATGAGCCAATCTCTGGCAAATTCATGCAAGGGTACCCTGCTGTACATGGCCCCCGAGATGATTGAGCCACCAGCAGACAGCCGAAGATATGGTCTAGCAGTTGATATATGGAGTTTAGGGTGTACTATAATTGAGATGGCTGATGGGAAGGGTCCATGGAGTCATTTGAAAGGGTTCAGCTTTTTCTTCAAGGTGAGCCAAGGGGAGTTGCCTCCTATTCCTGACATTCTAAGTTCTGAAGCAAAGGACTTCATCAGAAGTTGCCTGAAATGGAAGCCGGAAGAGAGGGCAAATGTGTCAGAGTTGCTTCATCATCCATTTGTAACCAATGCTCCTGCATTTACACCACATTTTTTTCCATAG___CATGTACTCTATGTCAACATCTTCAAGTGGGTCAGAATCCTGATAAAAGTTTATTGAAGGCAGGAATATCTTGTATGATTACTGAAATGAAGCTGTATCATAAATCCCAAGTTCTTCTGGAGTTACTGGTAGTCCGCTTCTGCATGGGAACATGTTCAAGTTGTTATCCGATTCAAGTTCTCACAGAATGTCAGCCAAAGCCGCATGCGCTTGATTTTCATTGCGTTACACCTGTTTGCTATTGCTCGAGTAAAATTAAACACCAATATCCAGTTACAAAAGTCAATTAATAGAACCTTGTCTTAGTCATGAGGTACCCTGTCAGTTGTTCTCCTCCATGTCCTTTGTGCTCCTAGGGATATAAGGCTATTACCAACAACAGAAATAGGAACTGAAATTCTATTTGGAAAATTTCATTAGGGTGCAAAATGATCCAAAATTAATTGTAAAAGCTCTCTTTTATGTGATTAGGAATGTCTTCTTAAAAGATCATGCTATTTCCCCACTATGATGCAGTTGAATTTTGCTCCATCATGTGTCTGTTCTTCCTAGTTGAACCAAATATTTGATCAGAGCCTGAATTTCCAAAAGCCACTGACCATGTTTGCCCTAATTATTGTATGTTTACCTAGTATCCATATCTAAGTTGATTCTTCTATTCTGATTAGTGTATGACCTTGCCAAAATGTCTCGAGTATGCCTCTATCATTCTTTGCAGGTAACAATAATGG

Fln Alignment:

Contig7620___PKCPRNWTKGKVLGKGSFGTVYEGLNMDDGSFFAVKVSDEQTTGPEIQQEVDVLRRLNHPNIVRYLGSSVKDGHLCIFLELGK-DSLRSVLDKYKRFEENMIRIYTRQILQGLEYLHQQNTVHRDIKCSNILVYPNGQVKLADFGVAKQM-----SQSLANSCKGTLLYMAPEMIEPPADSRRYGLAVDIWSLGCTIIEMADGKGPWSHLKGFSFFFKVSQGELPPIPDILSSEAKDFIRSCLKWKPEERANVSELLHHPFV
A9RYD0______________PKPPQRWKMGQLIGSGSFGSVYEGWNLDDGSFFAVKVSSIDNVSSEIHQEVAMLSKLKHPNIVQYYGTTTEDGNICIFLELVKMGSLEKIMKKFDAFDEVLIRLYTRQILKGLEYLHSRNTVHRDIKCANILVDSDGQVKLADFGLAKQVLTFRTSCSMASSVKGSPYYMAPEILAPQHSKRPYGLPVDIWSLGCTVIEMADGKPPWGAFQGYGFVFNVVKGVLPPIPEHLSDKAKDFISQCLRKRPEDRPTVKELLLHPFV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1308			11	88	0.923564
1398	80		20		0.995493
1434	80		20		0.995493
1439		20		80	0.995493
1445	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain