SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7617

Length: 1819 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7617

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent ligase, putative n=1 Tax=Ricinus communis RepID=B9S6X4_RICCO	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	AMP dependent ligase, putative	-	-	1.301e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	o-succinylbenzoate--CoA ligase.	EC:6.2.1.26	-	1.475e-31	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.475e-31	%
Sma3	Metabolic pathways	01100	1.475e-31	%
Sma3	Biosynthesis of secondary metabolites	01110	1.475e-31	%

Source	Gene names
Sma3	ACLL10; ACLL3; ACLL4; ACLL5; ACLL6; ACLL7; ACLL8; ACLL9; AMPBP1; AMPBP10; AMPBP2; AMPBP4; AMPBP5; AMPBP6; AMPBP7; AMPBP8; AMPBP9; At1g20560; At1g21530; At1g21540; At1g65880; At1g65890; At1g66120; At1g68270; At1g75960; At1g76290; At1g77240; At2g17650; At3g

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	acetate-CoA ligase activity	GO:0003987	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	benzoate-CoA ligase activity	GO:0018858	Molecular Function	-
Sma3	acetate metabolic process	GO:0006083	Biological Process	-
Sma3	glyoxylate cycle	GO:0006097	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	glucosinolate biosynthetic process	GO:0019761	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G16340.1	AMP-dependent synthetase and ligase family protein chr5:5349255-5350907 REVERSE LENGTH=550	56%
RefSeq	Arabidopsis thaliana	NP_197138.1	AMP-binding protein 6 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002329170.1	acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg: Overlapping hits, possible frame ERROR between 1438 and 1437, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning,

Fln protein: LKRCDANDSPLSPIGFMERAATVYGEMTSVIYNDSRFTWCQTFDRCRRLASALSSRNISRGDVVSVVAPNIPALYELHFAVPMAGAVLNNVNIRLNAPAMAIQFRHCQPKFVFVDYQYLPLVLEAIKGTDHKPCLVVIEEESDTDRGKEYLDTTTKITTYHGLLREGDPVFEPRQPKDEWEPIVLNYTSGTTSAPKGVVNSHRAAYISTMNILSMWGIKPRPVFLWTLPMFHNNGWSFPWGIAATGGTNICLRKFDAKLIYSYIQDHGVTHFCAAPVVLSMIANASSSDRKPLPGRVEILTSGASPPSSDLLRMEELGFSVSHGYGLTESGGFVTLCAWKPEWDKLTAVDRSKLRVRQGVGVLTLVQVDVKDPASMVTVPRDGKTMGEIMLRGSTVMMGYLNDERSTAKAMEGGWFHTGDLGVIHSDGYLEIKDRSKDIIISGGENISSVEVESVLYCHPMIAEAAVVGRPDPFWGETxxCAFVTNRVKASDPKLSGVRVSEAEMISFCRERLPHYMVPKTVVFMESLPKTSTGKIQKFLLREMAKLSSISSSLRGVGGMYSATA*

Protein Length: 567

Fln nts: GCTCAAGCGCTGTGATGCGAATGACAGTCCCTTGTCTCCAATAGGATTCATGGAGAGAGCCGCGACTGTCTATGGAGAAATGACATCAGTCATCTACAATGACAGTCGCTTCACATGGTGTCAAACATTCGACCGCTGTCGCAGACTTGCATCTGCTCTGTCTTCTCGCAATATTTCCCGAGGGGATGTGGTGTCCGTTGTCGCTCCCAACATTCCTGCACTATATGAACTGCATTTCGCAGTACCTATGGCCGGAGCAGTTCTCAACAACGTCAACATCCGTCTCAATGCTCCAGCAATGGCCATTCAATTCCGCCATTGCCAGCCCAAATTTGTATTCGTCGATTACCAATATCTGCCTCTGGTCCTGGAAGCCATTAAGGGAACTGACCATAAACCATGCCTGGTCGTGATTGAAGAAGAGAGCGACACCGATCGTGGCAAAGAATATTTGGACACCACTACAAAAATTACTACATACCATGGACTGCTGCGGGAAGGAGATCCAGTGTTCGAACCCAGGCAACCCAAGGACGAATGGGAACCGATCGTTCTGAACTACACATCGGGTACCACTTCGGCTCCCAAAGGAGTGGTGAACAGCCACAGGGCTGCATACATCAGCACAATGAATATTCTCTCAATGTGGGGAATCAAGCCACGGCCTGTCTTTCTGTGGACTCTGCCCATGTTCCACAATAATGGCTGGAGTTTTCCATGGGGAATAGCAGCTACTGGGGGGACAAATATATGCCTAAGAAAATTCGATGCTAAGCTCATATATTCATATATACAGGATCATGGAGTTACCCATTTCTGTGCCGCCCCGGTCGTGCTCTCCATGATCGCCAATGCGAGTTCGTCAGATCGGAAACCCTTGCCGGGCAGGGTTGAAATCTTGACCTCGGGAGCTTCCCCGCCATCTTCTGATCTGCTGAGAATGGAAGAGCTGGGCTTCTCTGTTAGTCATGGCTATGGGCTCACAGAATCTGGAGGGTTCGTCACACTCTGCGCCTGGAAGCCTGAATGGGATAAATTGACAGCTGTGGACAGATCCAAACTCAGGGTCAGGCAAGGCGTTGGGGTTCTGACTTTGGTTCAAGTCGATGTAAAGGATCCAGCGTCGATGGTTACCGTGCCCAGAGATGGCAAAACGATGGGCGAAATTATGCTGAGAGGAAGCACTGTGATGATGGGATATCTCAATGACGAGAGAAGCACAGCCAAAGCCATGGAAGGGGGCTGGTTCCACACGGGGGATCTTGGAGTGATTCACTCGGACGGTTATCTGGAAATAAAGGATCGTTCCAAAGACATTATCATCTCAGGGGGAGAAAACATTAGCAGTGTGGAGGTTGAGTCTGTGTTGTATTGCCATCCCATGATTGCTGAGGCGGCTGTGGTTGGGAGGCCTGATCCTTTCTGGGGAGAGACCxxxxxxTGTGCCTTTGTGACTAACAGAGTTAAAGCGAGCGATCCTAAGCTTTCTGGTGTAAGAGTATCAGAGGCTGAAATGATTTCGTTTTGCAGAGAGAGGCTGCCTCACTACATGGTTCCCAAAACCGTCGTCTTCATGGAGTCACTGCCCAAGACGTCCACTGGTAAAATTCAAAAGTTTCTTCTCAGGGAAATGGCGAAACTTTCTTCGATCAGTTCTTCCCTACGTGGCGTTGGTGGAATGTATTCTGCGACGGCATAACATTCGTTTGTATGCTGATTGTGCTTATCTCATTGTATGCTAATTGTGCGGGTGGGTCGATGTTTGTGCGCTGGTTTTAGGCGGCGCTTAAATTCTACGCGTATATATTTATTTTTTCCTTT

Fln Alignment:

Contig7617___LKRCDANDSPLSPIGFMERAATVYGEMTSVIYNDSRFTWCQTFDRCXXXXXXXXXXNISRGDVVSVVAPNIPALYELHFAVPMAGAVLNNVNIRLNAPAMAIQFRHCQPKFVFVDYQYLPLVLEAI------KGTDHKPCLVVIEEESDTDRGKEYLDTTTKITTYHGLLREGDPVFEPRQPKDEWEPIVLNYTSGTTSAPKGVVNSHRAAYISTMNILSMWGIKPRPVFLWTLPMFHNNGWSFPWGIAATGGTNICLRKFDAKLIYSYIQDHGVTHFCAAPVVLSMIANASSSDRKPLPGRVEILTSGASPPSSDLLRMEELGFSVSHGYGLTESGGFVTLCAWKPEWDKLTAVDRSKLRVRQGVGVLTLVQVDVKDPASMVTVPRDGKTMGEIMLRGSTVMMGYLNDERSTAKAMEGGWFHTGDLGVIHSDGYLEIKDRSKDIIISGGENISSVEVESVLYCHPMIAEAAVVGRPDPFWGETxCAFVTNRVKASDPKLSGVRVSEAEMISFCRERLPHYMVPKTVVFMESLPKTSTGKIQKFLLREMAK
A9NWM6______________LPKCPANYTALTPLWFIQRAALVYPKRKSVIHGARQYTWDQTYERCRRLASALAKRSIGPGTTVGVLAPNIPAAYEAHFGIPMAGAVLNSINIRLDARTIAFLLEHSRAVAVLVDQDFFMLLQEALGLMAKKHGSGFEPPFLVVIGDETCDEGNLKRALRSGAVEYEDFLQEGDPGFEWQPPDDEWQSIALGYTSGTTSSPKGVVLSHRGAYVASLGAALAWEMKGSGVYLWTLPMFHCNGWCYAWGMAAFCGTNICLRQVTARAIYASIAEHKVTHFCAAPVVLNTVVNCDPQDRVPIPRGISVMTAGSAPPASVLAKMEEQGFRVTHTYGLSETYGPSVVCAWKEEWDSLPPTDRARMNARQGVRYISLEGLDVVNPDSMVPVPADGSTVGEIVMRGNMMMKGYLRNPEANRESFRGGWFHSGDLAVKHPDGYIEIKDRSKDIIISGGENISSVEVENALYGHPRVLEASVVARPDERWGETxCAFITLK-GSGDPNEDESRIGQ-DIMNYCRARLPGYMVPRSVVF-GPLPKTATGKVQKHILRSKAK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
504	80		20		0.995493
1261	25			75	0.996473
1263	25			75	0.996473
1267	75		25		0.996473
1429	75		25		0.996473
1438	25	75			0.996473
1439	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain