SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7613

Length: 1676 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7613

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	67%

Source	Gene names
Sma3	At3g32930; GSVIVT00024750001; OSJNBa0072I06.33; Os07g0608100; OsI_26816; OsJ_25067; PHYPADRAFT_120007; POPTRDRAFT_817680; RCOM_1455560;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G32930.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species	63%
RefSeq	Arabidopsis thaliana	NP_566858.1	uncharacterized protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304872.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SY01

Fln msg:

Fln protein: MALKPIQTWSCMVCPATYTFPRTLMGFKESMHHVLAKGLCISMDCSTIAAIGCPYFGHKTFRQMHLHLQTRKKKQKQETRGSKSVIQASLVDQPILWVGRLCLFYTLLKVGIVGPQANSLSGVGDVKWTPKWLKNIIPAGSETQVTNDGRKMVRKWHVTTKGTLKRSYRVPMKSEGRRLLKAIASLLSDDDSFRDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLVVEITAFPAGPLTESDHVKAEKIERVLRTGASI*

Protein Length: 266

Fln nts: ATGGGGGCGTTCATGTAACCCTTTTGATATGTCCAGGAAATTGTTCATTCTGGAAGAAGTACAATCTGCAAAACATGTAAGGGTGTCTTAGTCACATTTGAACCTTCACAGGTTTCTGCTCTCGTTTTTTCATCCTGGTCCTCTCTGTCTGAAGTATTATACACGCACTGAAGTTCAGTGGAAACCAAATTGCTCAGATTCATGACGATGCAATGGAATCCAAGCTGGTAAATTTTTAATCAAATCCTAGCAGAGCGAGAGTGCATAGAAAAAGAATGTAGTTCAAATGTATGTTGGGTATTCTTCTTGCCATATATAAGTTGTCAATCCTGTGACCTGACTTGTTTCTCATAAAAAATAACAA_-_ATGGCGCTGAAGCCTATTCAAACGTGGTCATGTATGGTGTGTCCTGCTACATATACTTTTCCTAGGACGCTGATGGGGTTCAAGGAAAGCATGCATCATGTTCTGGCTAAAGGGTTGTGCATTTCCATGGATTGCTCTACCATTGCAGCAATTGGGTGCCCTTATTTTGGTCATAAAACATTCAGGCAAATGCATCTACATCTACAAACAAGGAAGAAGAAGCAGAAGCAGGAGACAAGAGGTTCAAAATCGGTGATACAAGCTTCTCTTGTGGACCAACCGATCTTGTGGGTTGGACGGCTCTGCCTTTTCTATACGCTCCTCAAGGTGGGAATTGTCGGTCCTCAAGCGAATTCTTTATCAGGTGTTGGGGATGTGAAATGGACGCCCAAATGGCTTAAGAATATCATTCCTGCTGGCTCAGAAACTCAAGTAACCAATGATGGAAGGAAGATGGTGCGGAAATGGCATGTTACAACAAAGGGCACACTCAAACGAAGCTACAGAGTGCCAATGAAATCGGAGGGTCGTAGACTTCTAAAGGCCATTGCTTCTCTTCTATCAGATGATGATAGCTTTAGAGATGCTACATCTCATAAGGGCTGCCAAATTCGAAGAGAGAGTGCCCATGGAGAGAGTGTGTGTTGTAATAATGTTAGGGCACTCTTTGATGAACTTCCTACCCCACATTTGGTAGTAGAGATTACTGCCTTCCCTGCTGGACCTCTGACTGAGTCAGACCATGTGAAAGCTGAAAAGATTGAGAGGGTTCTGCGAACTGGAGCTTCCATATGA___AAGAAATTTCCCCTGATTTAACTTTTCAAACAAAGACTATCATACCTTCTTCCAAATCGAGTTCTGTATATAGCACATTATGTTGTTTGTCGATTTACTCCTGTATAGCAGTATTTAGCATATACTATCGATGCATAACACAAGCATTTTTGCTTGCTTGAATGAAGAAATTGATCTGTACATCACTAGGATTTCTTTTTGAAAATAGATTTGTCTTTGACATCACAAGCCTTTTGGTTAGTTGGCTGACTTCAGAATTGGTTCAATTGTAATACTCTTTCAAGAGATTGTCTACAGGACAATTGTGGATGCCAGAGTTGATATTGTTAAGCGTCGATGCGTGCTGAGCTGGTATTGAGCTGGATGTAATAGATGGATCAGGGGACTGAGCTGGTACTGGTTCTTTAAGTGCGCTTCAAACATTTCACCTTCCTTGAAAGGATTGAACTGTCAAGAAGTTGCTGATTGGCTTGGCTACTTTATTAGAATTCTTGTATATTTTGTTTATCTATACATT

Fln Alignment:

Contig7613___TRGSKSVIQASLVDQPILWVGRLCLFYTLLKVGIVGPQANSL-SGV----------GDVKWTPKWLKNIIPAGSETQVTNDGRKMVRKWHVTTKGTLKRSYRVPMKSEGRRLLKAIASLLSDDDSFRDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLVVEITAFPAGPLTESDHVKAEKIERVLRTGASI
B9SY01______________TRKTVTTTNASLLETPVLWAGRLCIFYALLKSGLAGSKTNPLVSGLDGDGESAVESGDLGFS-KWLENI--QGKPDKEAADRRKLVSKWHPTTKGTLRRNYRVPSKSEGRRLLKAIASLLSDDDHFIEATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLVVEITAFPAGPLTEKDYVKAEKLERVLRSGPSI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1187	11			88	0.923564
1198	11		88		0.923564
1199	88			11	0.923564
1200		88	11		0.923564
1215	11	88			0.923564
1361	33			66	0.997452
1498		45	54		1.0
1523	54	45			1.0
1559	42			57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain