SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7604

Length: 1334 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7604

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative truncated TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS7_PINMO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	RGA; VITISV_014048;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 444 - 653

Fln protein: NVAKYPTGLDDKVIDFENTVILPRQHAGKPQIVGIVGLGGVGKTTLAKELFNRKSSGYSRCCFLADVRDNADKGTIHVLQIELLKKLGWDKPVDNVEAKTILKRHISSPNILIILDDVDKMDQVDELLPDQTVLHSDSLILITSRSKDILRRSGVEESSMYNLNGLPPQYSLELFCLYSFNQPHPLPGFESLAKKFTEACGGLPLSLKVFGALLNGEEDVSSWEAQLDKLQRILPEEIKQRLQISYDALDMEDRQIFLDIACFFIGEDRDRVIRICARSGGNGLWGFRNLENKCLVEVNSKNQIRMHDHLRDMGREIAEASSPRRLWRSTGKIDDLLQQLSAIDEVHGIKSTDHYGLNSVMPWCQRSKKLFSHSFMKFCNKQYPFHGSGICMRNLQLLHSRGVLVKHILTKVQFRNLVWLRWDSCPYSSLHSSISYLKNLRVLQ

Protein Length: 445

Fln nts: GAACGTTGCTAAATATCCAACAGGTTTGGATGACAAGGTAATTGATTTCGAAAATACAGTCATTTTGCCGCGACAGCATGCAGGAAAACCTCAGATCGTGGGGATCGTGGGGTTAGGTGGTGTAGGAAAGACCACGTTGGCAAAAGAACTGTTTAATAGGAAGAGTTCGGGTTACAGTAGATGCTGCTTTTTAGCTGATGTCAGAGATAATGCAGATAAAGGCACTATACATGTGTTGCAAATAGAACTTCTTAAGAAGTTAGGATGGGATAAGCCAGTAGATAATGTTGAAGCAAAAACAATTCTAAAAAGGCATATTTCATCTCCTAACATCTTAATAATTTTAGATGATGTAGATAAGATGGATCAAGTTGATGAACTTTTACCTGATCAAACTGTACTCCACTCCGATAGCTTAATACTGATTACATCTAGGAGCAAAGATATTCTCAGAAGGTCAGGAGTCGAAGAGTCATCAATGTATAACCTAAATGGCCTTCCTCCACAATATTCTCTTGAACTCTTCTGTTTGTATTCCTTCAATCAGCCACATCCACTCCCAGGGTTTGAATCTTTGGCAAAAAAGTTCACAGAAGCCTGTGGTGGATTGCCTTTATCCTTAAAGGTGTTTGGGGCACTTCTCAATGGAGAAGAAGATGTATCTTCCTGGGAAGCCCAGCTGGATAAACTTCAACGCATACTTCCGGAGGAGATAAAGCAAAGGCTTCAAATCAGTTACGACGCACTGGATATGGAGGACCGCCAGATATTCTTAGATATTGCCTGTTTTTTCATAGGAGAAGACAGGGATAGGGTCATCAGAATATGCGCTAGATCAGGTGGTAACGGTTTGTGGGGATTTCGAAATCTAGAGAACAAATGCCTCGTAGAGGTGAACAGTAAAAACCAAATAAGAATGCATGATCACCTGCGAGACATGGGAAGAGAGATTGCCGAAGCTTCATCGCCACGTCGTCTCTGGCGTTCTACAGGAAAAATTGATGATCTCTTGCAACAATTGTCCGCAATAGACGAAGTGCACGGAATTAAATCAACTGATCATTACGGCTTGAACTCAGTAATGCCTTGGTGCCAAAGAAGTAAAAAACTGTTTTCGCACAGTTTTATGAAGTTTTGCAATAAGCAGTATCCTTTTCATGGTAGTGGTATTTGTATGAGGAATTTGCAACTTCTTCATTCTAGAGGTGTTCTTGTGAAGCACATTTTGACAAAGGTGCAGTTTCGAAATCTCGTATGGCTGCGCTGGGACAGCTGTCCCTACTCTTCGCTGCATTCGTCCATTTCGTACTTGAAGAACTTAAGGGTTCTACAAG

Fln Alignment:

Contig7604___VAKYPTGLDDKVIDFENTVILPRQHAGKPQXXXXXXXXXXXKTTLAKELFNRKSSGYSRCCFLADVRDNADKGTIHVLQIELLKKL-GWDKPVDNVE-AKTILKRHISSPNILIILDDVDKMDQVDELLPDQTV-LHSDSLILITSRSKDILRRSGVEESSMYNLNGLPPQYSLELFCLYSFNQPHPLPGFESLAKKFTEACGGLPLSLKVFGALLNGEEDVSSWEAQLDKLQRILPEEIKQRLQISYDALDMEDRQIFLDIACFFIGEDRDRVIRICARSGGNGLWGFRNLENKCLVEVNSKNQIRMHDHLRDMGREIAEASSPRRLWRSTGKIDDLLQQLSAI---------DEVHGIKSTDHYGL----NSVMPWCQRSKKLFSHSFMKFCNKQYPFHGSGICMRNLQLLHSRGVLVKHILTKVQFRNLVWLRWDSCPYSSLHSSISYLKNLRVLQ
B8LMX8______________VAEYPTGLDCKLKDFEDTVLLQQQQSGEPQLLGIVGLGGVGKTTMAKELFNRKKTDYNTSCFLSDVRDHAATRSLNLLQSQLLKSLTGMDGNIVSVDQGKGMLMESLKSSKALIVLDDVDHVDQVKALLPVQTHDLDSRSLILITSRDMGVLRSSKIDKSSIYTLTWLNKQHSLELFCSHAFSQAYPLAGFERLVDNFLHCCKGLPLSLKVFGALLYSK-DISQWEDELESLQQILPSDIHETLIISYRSLNKEEKEIFLDIACFFINQNRDAAISTWNGSGWRAKRGFLNLQDKSLVEVDGENCIHMHDHLRDLGRQVAASSSPLRLWRTENVIEDLLHQSSDITVRGIRMVHDEYSGYDEDDLFGVIDTENAVLE---------------------------RILRRLQILHIEGSLLERILMKVKLPNLLWFHWEKCPHSSLPAWVP-IKNLRVLQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
833	20	80			0.995493
867	75		25		0.996473
1063		71		28	1.0
1069	28		71		1.0
1073		14		85	0.993533
1076	71		28		1.0
1077		85		14	0.993533
1107	16	83			0.994512
1108	16		83		0.994512
1109	66		33		1.0
1110	83		16		0.994512
1174		20		80	0.995493
1176		20		80	0.995493
1274	33		66		0.997452
1275	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain