SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7601

Length: 1448 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7601

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Seryl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RJP1_RICCO	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Seryl-tRNA synthetase, putative	-	-	1.125e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Serine--tRNA ligase.	EC:6.1.1.11	-	8.937e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		8.937e-14	%

Source	Gene names
Sma3	At1g11870; CHLREDRAFT_97141; F12F1.29; GSVIVT00011042001; GSVIVT00033603001; LOC_Os11g39670; MICPUCDRAFT_70902; MICPUN_58112; OSTLU_37135; Os11g0610900; OsI_23052; OsI_23053; OsJ_26871; Ot04g01720; PHYPADRAFT_145532; POPTRDRAFT_760746; POPTRDRAFT_816363;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	serine-tRNA ligase activity	GO:0004828	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	seryl-tRNA aminoacylation	GO:0006434	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant ascorbate peroxidase	IPR002207	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Seryl-tRNA synthetase, class IIa	IPR002317	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Seryl-tRNA synthetase, class IIa, N-terminal	IPR015866	-	-
Sma3		IPR018156	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G11870.2	-	59%
RefSeq	Arabidopsis thaliana	NP_849647.1	Seryl-tRNA synthetase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002301073.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM11

Fln msg: Overlapping hits, possible frame ERROR between 894 and 885, Distance to subject end: 60 aas, your sequence is shorter than subject: 483 - 542

Fln protein: MGMVMASSGGGALQGAIPTSTSFTQLLASRPLPFCSLSVLNRRTWLPRRGWNGTTQLVKISHSSPKRRLFISRAVASVETQQGPTPAREEIKDIGQSRPLWKASIDFKWIRDNKEAVALNARNRKSAANVELVVELYERLCNLQTEVESLRAERNVVANRMKRKLDPSEREKLIAEGKHLKDNLVTLEEDLTQLTDKLQREAQSIPNSTHPDVPIGGEDAASLRKMFGTKCEFDFPVKDHVDIGQELDLFDFDAAAEVSGTKFYYLKNEAVLLEMGLINWALSELVTRGYTPLSxxxxxRSSVLEKCGFQPRALNTQVYSIEGTDQCLAGTAEIPVGGMYMDQIIDDSLLPLKFVAFSHCFRTEAGAAGYATRGLYRVHQFSKVEMFVICRPEDSDSFHEELISIEESLFSSLGLHFKTLDMPSEDLGAPAYRKYDVEAWMPGLGRYGEISSSSNCTDYQSRRLNIRYRPALEESNPSTVDKP

Protein Length: 484

Fln nts: _-_ATGGGGATGGTAATGGCTTCCTCGGGTGGAGGAGCCCTTCAAGGAGCTATTCCTACTTCCACATCTTTTACACAATTATTAGCCAGCAGGCCTCTTCCATTCTGTTCATTGTCTGTGTTAAATCGTAGGACTTGGCTGCCACGCAGAGGTTGGAATGGTACCACCCAATTGGTTAAAATTAGCCATAGTTCGCCAAAGAGAAGGTTGTTCATTTCTCGTGCTGTAGCTTCTGTAGAAACCCAACAGGGTCCAACTCCTGCCAGGGAAGAAATCAAAGATATTGGTCAGAGTAGGCCTCTGTGGAAAGCAAGCATAGACTTTAAATGGATTCGTGATAACAAAGAAGCAGTCGCTTTGAATGCTCGGAACAGAAAGTCTGCTGCCAATGTGGAACTGGTAGTTGAGCTCTATGAGCGGTTATGCAATCTGCAAACTGAAGTAGAAAGTCTGCGAGCTGAAAGAAATGTGGTTGCAAATAGGATGAAACGCAAGCTTGATCCTTCAGAGCGGGAGAAATTAATAGCAGAAGGAAAGCACTTGAAGGACAACCTTGTGACACTAGAAGAAGACCTTACACAGCTTACAGATAAACTACAGCGAGAGGCACAATCCATACCAAATTCAACCCATCCAGATGTTCCAATTGGAGGAGAGGATGCTGCATCACTGAGAAAAATGTTTGGGACCAAATGTGAATTTGACTTTCCTGTGAAAGATCACGTGGACATAGGTCAAGAGCTTGATCTCTTTGATTTTGATGCAGCTGCAGAGGTTAGTGGAACAAAGTTCTATTACCTAAAAAATGAGGCTGTTTTGTTGGAGATGGGGCTCATTAACTGGGCACTGTCAGAACTTGTAACAAGAGGATACACGCCTTTGAGCxxxxxxxxxxxxxxxCGGTCATCTGTTTTGGAAAAGTGTGGCTTTCAACCTCGGGCACTGAATACACAGGTGTACTCTATAGAGGGAACAGACCAGTGTTTAGCAGGTACAGCAGAGATTCCAGTGGGAGGAATGTACATGGATCAAATTATTGATGATTCCCTTTTGCCATTGAAGTTTGTTGCGTTTTCACATTGCTTCCGCACAGAAGCTGGTGCTGCAGGCTATGCAACAAGGGGCCTGTACCGTGTTCATCAATTTAGCAAGGTTGAGATGTTCGTAATATGTCGTCCAGAGGATAGTGATTCGTTTCATGAGGAGCTCATTAGCATTGAAGAATCCCTCTTTTCTTCACTTGGACTACACTTCAAGACTCTAGACATGCCTTCTGAAGACCTAGGCGCACCTGCATATCGCAAGTATGATGTGGAGGCGTGGATGCCAGGTTTAGGACGGTATGGTGAGATATCTAGCTCATCAAACTGTACTGATTACCAAAGTCGTCGACTCAATATTCGATACCGGCCTGCACTTGAAGAATCAAATCCTTCAACAGTTGACAAGCCT

Fln Alignment:

Contig7601___LQGAIPTSTSFTQLLASRPLPFCSLSVLNRRTWLPRRGWNGTTQLVKISHSSPKRRLFISRAVASVETQQGPTPAREEIKDIGQSRPLWKASIDFKWIRDNKEAVALNARNRKSAANVELVVELYERLCNLQTEVESLRAERNVVANRMKRKLDPSEREKLIAEGKHLKDNLVTLEEDLTQLTDKLQREAQSIPNSTHPDVPIGGEDAASLRKMFGTKCEFDFPVKDHVDIGQELDLFDFDAAAEVSGTKFYYLKNEAVLLEMGLINWALSELVTRGYTPLSTxxxVRSSVLEKCGFQPRALNTQVYSIEGTDQCLAGTAEIPVGGMYMDQIIDDSLLPLKFVAFSHCFRTEAGAAGYATRGLYRVHQFSKVEMFVICRPEDSDSFHXXXXXXXXXXXXXXXXHFKTLDMPSEDLGAPAYRKYDVEAWMPGLGRYGEISSSSNCTDYQSRRLNIRYRPALEESNPSTVDKP
B8LM11______________LQGAIPTSTSFSQLLPCRSLPFCSSSVLSCRTWVPCRGWNGTTQLVKISHNSPKRRLYICRAVASVDTQQGPTPAKEEIKGDGQSRSLWKASIDFKWIRDNKEAVALNARNRKSVANVELVVELYEQLCNLQTEVESLRAERNVVANRMKQKLDPSEREKLIAEGKHLKDNLVALEEDLAQLTDKLQREAQSIPNSTHPDVPIGGEDAASLRKMVGTKCEFDFPVKDHVDLGQELDLFDFDAAAEVSGTKFYYLKNEAVLLEIGLINWALSELVKRGYTPLSTxxxVRSSVLEKCGFQPRALNTQVYSIEGTDQCLAGTAEIPVGGMYMDQIIDDSLLPLKFVAFSHCFRTEAGAAGYATRGLYRVHQFSKVEMFIICRPEDSDSFHEELISIEESLFSSLGLHFKTLDMPSEDLGAPAYRKYDVEAWMPGLGRYGEISSSSNCTDYQSRRLNIRYRPAIEESNPSTVVKP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
959	33		66		0.997452
1008		66		33	0.997452
1356		20		80	0.995493
1357	20	80			0.995493
1359	80			20	0.995493
1375	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain