SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7588

Length: 2386 nt

UniGene Fasta

>sp_v3.0_unigene7588
CAAGGCTTCATCTAATGATGTAGCCGATGCAATGCTTAAGCCAGGTACATTCCCACCATCTTTGTTTCATTATGTTGAAAGAGCATTGGCTCGTTGTAAAGATGAAACTCAAAAGACTGCCTGCCAAGATTTATTGAAGGAGATGATTACAAAAGCTTCTGCGGATGGTTCACTTTTTACTAGAGATTGGGACACGGAACCTTTGATTCTGCTACCTAGTTCAGTCATGGGAGCAAGCATAGAGAATATGCAGAGCACTATATCTGTGGCATCGGTGCAAAAACCTGAACGCAATCAGGGGAAGCGCTATAAGAGTCGATGGGAGCCTGCTGTTGAAGAGAAACCAGACAAAGAACAAGAATCTGCTGTAAATCATGGATTCAGCAAGGAAGGGGTGTGGAATCCCTTGAAAGAAGGGCAGGAACAAGGAGTTGCTGTAAATCATGGGTTCAGCAAGGAAAGGGTGTGGAATCCCTTGAAAGAAGGGCAGAGTAAGGTAGCTGCAGTAAATGGAGTATGGAACAAGAGCACACAATTACACCTGCAGAAACCATTTGATTCAAACAAAATGTCTGCACGGCCAATAAAGAAGGCACGGAAAGGTGATGGCCCAACTGCTGATGGATCTGGGGATAGTCCTAGTGATACTGATGAAGAATCTTGGCGAGGTGGGCTTTGTTTTGGTTCTCGAGGATTTACTGAAACACTAGAAGAGAGGAAACGGAGAGAGAGCAGGACTAAACGTTTTGATAAAGAAAATGGAAGAGGTGCAAAGACTAAAGAGCCTGCAATTATATTGAATGGAACTGCAAGTGGTGCAACAACTAAGAGCTATGGACATAGTGGTGGAGGGGCAGTTGAAGACATTGGCTGGGATTCTCTAACGGTCAAAGGAACATGCCAGGAAATAGAGAAGCGCTACTTGCGGCTTACATCTGCTCCTGATCCAAATACCGTCAGGCCAGAAGAAGTCTTGCAAGAAGCTTTGGCCATGGTGCAGAATTCACCAAAGACTTATTTATATAAATGTGACCAGTTGAAGTCAATTCGTCAAGATCTTACAGTGCAGCGTATTAGAAATGAATTTACAGTAAAGGTCTATGAAACACATGCCCGATTAGCTCTGGAGGCTGGAGACATGCCAGAATACAACCAGTGTCAGTCACAGATTCAAGGGCTATATGCTGAAGGCATTGAGGGTTCTCGTCATGAATTTGCGGCTTACAAGTTATTATATAGTTGTCTGAATCCAGGCAACACTAGTCATCTTTTGTCTTCAATGGCGAGGTTGTCAAAAGATGCGAAGAATGATGAAGCTGTAAAGCATGCATTAGCAGTTAGAGCAGCTGTTTCTTTGGGGAATTATACTGCATTTTTTCGCTTATATAGAACGGCTTCAAACTTGAGTGCTTGTCTGATGGACCTTTATGTGGAGAAAATGCGCTTTGAAGCTGTCAGATGCATAGCCCGTTCTTATCGCCCAGCAGTACCAGTTGCTTTTATTGCACAAGTATTAGGGTTTATGGATAGCTCTTCATTTAAAACCTGTAATGAATTTGATGGGTTTGCTGAATGTGAAGAATGGCTGAGAGCACATGGTGCTATTCTGATCACAGACAAGAGTACTGGAGAACTGCAGCTCAATGCAAAGGATAGTGCACCTTGTCTTTTTATGCCTGAACCTGAAGATGCTGTTCCACATGGTGATGCTTATCTTGCTGTAAATGATTTTTTTGCACGGGCATAATTTCCATGTATTTTTATGGTAATGTCTTAATTTTTTAAGCATGGGCTAAATGAATGATCTTATTAATCTGTAACTGTATGGCTTTTCACTGCTGGTTGTAACATTGATATAAGAGGATCTCAAGCTTTCCTTTCCACGGTTCCCTGGGTGAAGGAATGTGGGTTATTCTTGTCCTTTTCTATATCTCCGAGTTCTCAACGAAATGGTCTATTTTACTTTCAAATGCAAAGTGAAGGTGAAAGCATGTAGCAGTAGTTGGCTTCGAAAAATAAGTTCAGCTCTTTGGAAAATTTTCCAAAAATGTAATTGAAGAGTTTGAGTTTATGATATTTTATTATGTTACTGAATTGAACTTACCTTTTTGGATTTAGCTGTATACCATGACAAAAACTGCAGGAAATCTGGCATTGGAAGCATGTTGAAATTGTCCTGGAATATTGGAAAATCATCAAAGAAATTGAAGGCACTGGCATGCAATATTCTGATACTTCAAAAGAGATTTTTAGAAGCCTTCTTATACCTTCAAGGGCAAACTCTCCTTTCTAGGTATCATCAGATTTTGCAAAGATTGATTCAGAACAATTGTAGAAATGTTAAAGAGGTCCACTAGGAGTTTTCTTCTATTTCTACCTCTGTTTC

Ace file of the UniGene sp_v3.0_unigene7588

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SAC3/GANP/Nin1/mts3/eIF-3 p25-family protein [Arabidopsis thaliana] gb\|AEC09663.1\| SAC3/GANP/Nin1/mts3/eIF-3 p25-family protein [Arabidopsis thaliana]	-	-	0.0	49%
FL-Next	tr=Leukocyte receptor cluster member-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	53%

Source	Gene names
Sma3	At2g39340; GSVIVT00029503001; MICPUCDRAFT_18380; MICPUN_85328; OJ1525_A02.9; Os01g0836400; Os05g0462600; OsI_04342; OsI_20246; OsJ_03995; OsJ_18828; P0506B12.26; PHYPADRAFT_199964; PHYPADRAFT_215791; POPTRDRAFT_227728; POPTRDRAFT_832524; RCOM_0745220; VIT

Source	InterPros	Term	Type	e value	Identity
Sma3	SAC3/GANP/Nin1/mts3/eIF-3 p25	IPR005062	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39340.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family chr2:16424043-16429771 FORWARD LENGTH=1006	50%
RefSeq	Arabidopsis thaliana	NP_181466.2	SAC3/GANP/Nin1/mts3/eIF-3 p25-family protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002311131.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: G7J3M1

Fln msg: your sequence is shorter than subject: 582 - 1016

Fln protein: KASSNDVADAMLKPGTFPPSLFHYVERALARCKDETQKTACQDLLKEMITKASADGSLFTRDWDTEPLILLPSSVMGASIENMQSTISVASVQKPERNQGKRYKSRWEPAVEEKPDKEQESAVNHGFSKEGVWNPLKEGQEQGVAVNHGFSKERVWNPLKEGQSKVAAVNGVWNKSTQLHLQKPFDSNKMSARPIKKARKGDGPTADGSGDSPSDTDEESWRGGLCFGSRGFTETLEERKRRESRTKRFDKENGRGAKTKEPAIILNGTASGATTKSYGHSGGGAVEDIGWDSLTVKGTCQEIEKRYLRLTSAPDPNTVRPEEVLQEALAMVQNSPKTYLYKCDQLKSIRQDLTVQRIRNEFTVKVYETHARLALEAGDMPEYNQCQSQIQGLYAEGIEGSRHEFAAYKLLYSCLNPGNTSHLLSSMARLSKDAKNDEAVKHALAVRAAVSLGNYTAFFRLYRTASNLSACLMDLYVEKMRFEAVRCIARSYRPAVPVAFIAQVLGFMDSSSFKTCNEFDGFAECEEWLRAHGAILITDKSTGELQLNAKDSAPCLFMPEPEDAVPHGDAYLAVNDFFARA*

Protein Length: 583

Fln nts: CAAGGCTTCATCTAATGATGTAGCCGATGCAATGCTTAAGCCAGGTACATTCCCACCATCTTTGTTTCATTATGTTGAAAGAGCATTGGCTCGTTGTAAAGATGAAACTCAAAAGACTGCCTGCCAAGATTTATTGAAGGAGATGATTACAAAAGCTTCTGCGGATGGTTCACTTTTTACTAGAGATTGGGACACGGAACCTTTGATTCTGCTACCTAGTTCAGTCATGGGAGCAAGCATAGAGAATATGCAGAGCACTATATCTGTGGCATCGGTGCAAAAACCTGAACGCAATCAGGGGAAGCGCTATAAGAGTCGATGGGAGCCTGCTGTTGAAGAGAAACCAGACAAAGAACAAGAATCTGCTGTAAATCATGGATTCAGCAAGGAAGGGGTGTGGAATCCCTTGAAAGAAGGGCAGGAACAAGGAGTTGCTGTAAATCATGGGTTCAGCAAGGAAAGGGTGTGGAATCCCTTGAAAGAAGGGCAGAGTAAGGTAGCTGCAGTAAATGGAGTATGGAACAAGAGCACACAATTACACCTGCAGAAACCATTTGATTCAAACAAAATGTCTGCACGGCCAATAAAGAAGGCACGGAAAGGTGATGGCCCAACTGCTGATGGATCTGGGGATAGTCCTAGTGATACTGATGAAGAATCTTGGCGAGGTGGGCTTTGTTTTGGTTCTCGAGGATTTACTGAAACACTAGAAGAGAGGAAACGGAGAGAGAGCAGGACTAAACGTTTTGATAAAGAAAATGGAAGAGGTGCAAAGACTAAAGAGCCTGCAATTATATTGAATGGAACTGCAAGTGGTGCAACAACTAAGAGCTATGGACATAGTGGTGGAGGGGCAGTTGAAGACATTGGCTGGGATTCTCTAACGGTCAAAGGAACATGCCAGGAAATAGAGAAGCGCTACTTGCGGCTTACATCTGCTCCTGATCCAAATACCGTCAGGCCAGAAGAAGTCTTGCAAGAAGCTTTGGCCATGGTGCAGAATTCACCAAAGACTTATTTATATAAATGTGACCAGTTGAAGTCAATTCGTCAAGATCTTACAGTGCAGCGTATTAGAAATGAATTTACAGTAAAGGTCTATGAAACACATGCCCGATTAGCTCTGGAGGCTGGAGACATGCCAGAATACAACCAGTGTCAGTCACAGATTCAAGGGCTATATGCTGAAGGCATTGAGGGTTCTCGTCATGAATTTGCGGCTTACAAGTTATTATATAGTTGTCTGAATCCAGGCAACACTAGTCATCTTTTGTCTTCAATGGCGAGGTTGTCAAAAGATGCGAAGAATGATGAAGCTGTAAAGCATGCATTAGCAGTTAGAGCAGCTGTTTCTTTGGGGAATTATACTGCATTTTTTCGCTTATATAGAACGGCTTCAAACTTGAGTGCTTGTCTGATGGACCTTTATGTGGAGAAAATGCGCTTTGAAGCTGTCAGATGCATAGCCCGTTCTTATCGCCCAGCAGTACCAGTTGCTTTTATTGCACAAGTATTAGGGTTTATGGATAGCTCTTCATTTAAAACCTGTAATGAATTTGATGGGTTTGCTGAATGTGAAGAATGGCTGAGAGCACATGGTGCTATTCTGATCACAGACAAGAGTACTGGAGAACTGCAGCTCAATGCAAAGGATAGTGCACCTTGTCTTTTTATGCCTGAACCTGAAGATGCTGTTCCACATGGTGATGCTTATCTTGCTGTAAATGATTTTTTTGCACGGGCATAA___TTTCCATGTATTTTTATGGTAATGTCTTAATTTTTTAAGCATGGGCTAAATGAATGATCTTATTAATCTGTAACTGTATGGCTTTTCACTGCTGGTTGTAACATTGATATAAGAGGATCTCAAGCTTTCCTTTCCACGGTTCCCTGGGTGAAGGAATGTGGGTTATTCTTGTCCTTTTCTATATCTCCGAGTTCTCAACGAAATGGTCTATTTTACTTTCAAATGCAAAGTGAAGGTGAAAGCATGTAGCAGTAGTTGGCTTCGAAAAATAAGTTCAGCTCTTTGGAAAATTTTCCAAAAATGTAATTGAAGAGTTTGAGTTTATGATATTTTATTATGTTACTGAATTGAACTTACCTTTTTGGATTTAGCTGTATACCATGACAAAAACTGCAGGAAATCTGGCATTGGAAGCATGTTGAAATTGTCCTGGAATATTGGAAAATCATCAAAGAAATTGAAGGCACTGGCATGCAATATTCTGATACTTCAAAAGAGATTTTTAGAAGCCTTCTTATACCTTCAAGGGCAAACTCTCCTTTCTAGGTATCATCAGATTTTGCAAAGATTGATTCAGAACAATTGTAGAAATGTTAAAGAGGTCCACTAGGAGTTTTCTTCTATTTCTACCTCTGTTTC

Fln Alignment:

Contig7588___KASSNDVADAMLKPGTFPPSLFHYVERALARCKDETQKTACQDLLKEMITKASADGSLFTRDWDTEPLILLPSSVMGASIENMQSTISVA--SVQKPERNQGKRYKSRWEPAVEEKPDKEQESAVNHGFSKEGVWNPLKEGQEQGVAVNHGFSKERVWNPLKEGQSKVAAVN-----GVWNKSTQLHLQKPFDSNKMSARPIKKARKGDGPTADGSGDSPSDTDEESWRGGLCFGSRGFXXXXXXXXXXXXXXXXFD-------KENGRGAKTKEPAIILNGTASGAT-TKSYGHSGGGAVEDIGWDSLTVKGTCQEIEKRYLRLTSAPDPNTVRPEEVLQEALAMVQNSPKTYLYKCDQLKSIRQDLTVQRIRNEFTVKVYETHARLALEAGDMPEYNQCQSQIQGLYAEGIEGSRHEFAAYKLLYSCLNPGNTSHLLSSMARLSKDAKNDEAVKHALAVRAAVSLGNYTAFFRLYRTASNLSACLMDLYVEKMRFEAVRCIARSYRPAVPVAFIAQVLGFMDSSSFKTCN---EFDGFAECEEWLRAHGAILITDKSTGELQLNAKDSAPCLFMPEPEDAVPHGDAYLAVNDFFARA
G7J3M1______________KLSSNDAANSILKPGMFPKSLRGYVERALARCKDDKQMAACQAVMKEMITKATADCTLCTRNWDMEPLFPMPE----ADAENKDNSLSSTHDSLLPKSRKSPRRSKSRWEPLPEEKLVDHHPVSTSSDTVKYSSWVP--PVNHHPVSTSNDTVKYSSWVP-NEKDRKVVVENKESKEDSWRNTKFSPLFQRI-SSKAPQRPFKKQRLADVSTAHENGDASSDSDKEQSLTAYYSAAMAFNDTPEEKKRRESRSKRFDLGQAQRTENNHSRKKNARAGNLYNRRASALVLSKSFDNGVSKAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPEEVLEKALLMVQNSQRNYLYKCDQLKSIRQDLTVQRIHNQLTVKVYETHARLALEVGDLPEYNQCQSQLKALYAEGIKGSYMEFAAYNLLCVIMHSNNYRELLSSMARLSDEAKKDEAVKHALAVRAAVTSGNYVAFFRLYKAAPNLNTCLMDLYVEKMRYKAVTCMCRSYRPTVPVSYVSQVLGFSSVVVTNEANDEKEAAALEECLEWLKAHGASIIAD-NNGDMMVDTKVSSSSLFVPEPEDAVAHGDANLAVNDFLAKA

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1564	83		16		0.994512
1650		14	14		0.984337
1653	85		14		0.993533
1658	85	14			0.993533
1659	85			14	0.993533
1660	85			14	0.993533
1663	83	16			0.994512
1672		83		16	0.994512
1673		20		80	0.995493
1674	20			80	0.995493
1684		20		80	0.995493
1686		80		20	0.995493
1691	80	20			0.995493
1693		80		20	0.995493
1696	80		20		0.995493
1697	80	20			0.995493
1698			80	20	0.995493
1699	80		20		0.995493
1701		20	80		0.995493
1758	77	11	11		0.968132
1759	88			11	0.923564
1760		11		88	0.923564
1761	11	11	11		0.944822
1762		11		88	0.923564
1764		88	11		0.923564
1765	11	88			0.923564
1772		11		88	0.923564
1775			11	77	0.968132
1776	88	11			0.923564
1779			88	11	0.923564
1780	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain