SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7570

Length: 1771 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7570 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01501, Glyco_transf_8, Glycosyl transferase family 8	-	-	0.0	28%
FL-Next	sp=Probable galacturonosyltransferase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	1.335e-23	-

Source	Gene names
Sma3	AT4g38270; At1g18580; At1g18580/F25I16.8; At2g20807; At2g20810; At2g46480; At3g01040; At3g02350; At3g25140; At3g61130; At4g38270; At5g15470; At5g15470/T20K14_80; At5g47780; B1142B04.29; F11A12.4; F11A12_103; F22I13.40; F25I16.8; GSVIVT00000005001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18580.1	GAUT11 galacturonosyltransferase 11 chr1:6396144-6398005 FORWARD LENGTH=537	67%
RefSeq	Arabidopsis thaliana	NP_564057.4	alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002330135.1	glycosyltransferase [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q949Q1

Fln msg:

Fln protein: MNLMRRRAVDFRRPVHRGISRGILVLLGIFLVILMLMLFTHQQHPTPRLEESQMDVLTTQGKTKINILTAEMVSEDSLTRQLGDQITLAKAYVVIAKENNNLQLAWELSSQIRSCLLLLSKAASRGHPVTKEESEPIIRGMSSLIYQAKELHYDSAIMIMKLKAHIQALEERGSAATVQSTTFGQLAAESVPKSLYCLGVKLTREYSKDSNIQKLINDQKNSPRFTDNNLYHFCLFSDNILATSVVVNSTICNADHTKQFVFHIVTDNVNYRAMQAWFAMNDYKGAAIEVQCVDDFTWLNASYVPVLKQLQDAETQGYYFKGSQDTSSALKFHNPKYLSMLNHLRFYIPEIYPALDKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPKIHSHFDPEACGWAFGMNVFDLVAWKNANVTSRYHYWQEQNVDRTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVVHFNGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQCITY*

Protein Length: 538

Fln nts: ATGGGGGGTTCCATTCACTGCCAACGGATCCCAAAGTTCAAAGTAAACAGCACTAGTGTGCGTTGCTGATTCAGCTAAAAGTGAATAAGA_-_ATGAATTTGATGAGGCGAAGAGCTGTTGATTTCAGACGCCCAGTGCACAGGGGAATTTCCAGGGGAATTCTGGTTCTTCTGGGCATTTTTCTTGTGATCCTGATGCTCATGCTCTTCACCCATCAGCAACATCCAACTCCTCGACTTGAAGAATCCCAGATGGATGTATTGACAACACAAGGGAAGACAAAAATCAATATTTTGACAGCAGAAATGGTTAGTGAAGATTCTTTGACAAGACAGTTGGGAGATCAGATCACTTTAGCTAAAGCATATGTTGTAATTGCAAAGGAAAATAACAATTTACAACTTGCATGGGAGTTAAGTTCCCAGATCAGAAGTTGTCTACTATTGCTTTCCAAAGCAGCTAGTAGAGGACATCCAGTCACAAAAGAGGAGTCAGAGCCTATTATTCGAGGGATGTCATCACTGATATATCAGGCCAAAGAGCTCCATTATGACAGTGCAATAATGATCATGAAACTGAAGGCTCATATACAAGCCTTGGAGGAACGTGGAAGTGCAGCTACAGTACAGAGCACAACTTTTGGACAACTCGCTGCAGAATCAGTTCCAAAGAGTCTTTACTGTTTAGGAGTAAAGTTGACCAGGGAGTATTCCAAGGATTCTAACATCCAAAAGCTCATAAATGATCAGAAAAATTCTCCAAGATTCACTGATAATAATTTATACCATTTTTGCTTGTTCTCTGATAATATTCTTGCAACATCTGTGGTAGTGAACTCTACCATATGCAATGCTGATCATACAAAGCAGTTTGTGTTCCATATTGTCACGGACAATGTCAATTATAGGGCTATGCAGGCTTGGTTTGCAATGAATGACTATAAAGGGGCAGCTATAGAAGTGCAGTGTGTGGATGACTTTACTTGGTTGAATGCATCATATGTTCCTGTTTTGAAGCAACTGCAAGATGCTGAAACACAAGGCTACTACTTCAAAGGATCACAAGATACAAGCAGTGCACTGAAATTCCATAACCCAAAATACCTCTCAATGTTAAACCATTTAAGGTTCTACATTCCTGAAATATATCCTGCACTGGACAAAGTGGTGTTTCTGGATGATGATGTGGTTGTTCAAAAAGACTTGACACCACTTTTCTCAATAGACTTGCACGGAAATGTGAATGGGGCTGTTGAAACTTGTCTTGAGACATTCCACCGATACCATAAATATCTCAACTTCTCTCACCCTAAGATCCATTCTCACTTCGATCCTGAAGCTTGTGGATGGGCCTTTGGGATGAATGTGTTTGATCTTGTAGCATGGAAGAATGCCAATGTAACTAGCCGATATCATTACTGGCAGGAGCAAAATGTGGATCGAACACTCTGGAAGCTAGGTACATTGCCTCCAGGATTGCTTTCATTCTATGGCCTCACTGAACCACTGGATCGTCGATGGCATGTATTAGGCTTAGGTTATGATCTAAACATTGATGAACAGCTTATTGAGAGTGGGGCAGTTGTACATTTTAATGGTAATATGAAGCCCTGGTTGAAGCTAGCAATGAAAAGGTACAAGGCTATATGGGAAATGTACGTGAATTACTCACACCCATTGCTGCAGCAATGCATAACATATTGA___TTTTGCTTTGGTTCTTAATTTATTATTTTGCACTTGCTATCTAATTAATTAGAGCTTTGCTTTCAACATT

Fln Alignment:

Contig7570___HQQHPTPRLEESQMDVLTTQGKTKINILTAEMVSEDSLTRQLGDQITLAKAYVVIAKENNNLQLAWELSSQIRSCLLLLSKAASRGHPVTKEESEPIIRGMSSLIYQAKELHYDSAIMIMKLKAHIQALEERGSAATVQSTTFGQLAAESVPKSLYCLGVKLTREYSKDSNIQKLINDQKNSPRFTDNNLYHFCLFSDNILATSVVVNSTICNADHTKQFVFHIVTDNVNYRAMQAWFAMNDYKGAAIEVQCVDDFTWLNASYVPVLKQLQDAETQGYYF--KGSQDTSSALKFHNPKYLSMLNHLRFYIPEIYPAXXXXXXXXXXXXXXXXLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPKIHSHFDPEACGWAFGMNVFDLVAWKNANVTSRYHYWQEQNVDRTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVVHFNGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQCIT
Q949Q1______________HQQDPSQLLLER--DTRTEMVSPPHLNFTEEVTSASSFSRQLAEQMTLAKAYVFIAKEHNNLHLAWELSSKIRSCQLLLSKAAMRGQPISFDEAKPIITGLSALIYKAQDAHYDIATTMMTMKSHIQALEERANAATVQTTIFGQLVAEALPKSLHCLTIKLTSDWVTEPSRHELADENRNSPRLVDNNLYHFCIFSDNVIATSVVVNSTVSNADHPKQLVFHIVTNRVSYKAMQAWFLSNDFKGSAIEIRSVEEFSWLNASYSPVVKQLLDTDARAYYFGEQTSQDTISEPKVRNPKYLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGWAFGMNVFDLIAWRNANVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDVNIDNRLIETAAVIHYNGNMKPWLKLAIGRYKPFWLKFLNSSHPYLQDCVT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1209	12		87		0.992554
1225		12		87	0.992554
1287		25		75	1.0
1372		14	85		0.993533
1374	85	14			0.993533
1376			85	14	0.993533
1490		16		83	0.994512
1491		16	83		0.994512
1529			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain