SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7566

Length: 3108 nt

UniGene Fasta

>sp_v3.0_unigene7566
CGTCGTGACCTTGGCTGTCACTCAGATACTCGCACCAGACCAATCCCTCAAAGCTTCATGAATCTCACAGTCCGTTTGATTAGCCCTTTGGCCAGGCCTGCTTTTTCTACATTGAACAGGTTCGTTTGGAAGGGCATCCGTCTGAGTACAAAGGGCAGTTTACCCTCATTTATTAACCGTTCGATTCGGCTGTGCCACGCTGCTGAATTCAATATGGGTTCGTTGCCCGCTGAAGAACGCTTGGACTATCCAGAAGCGAGGAGAGATGAGTCTGTAGTAGACGACTATCACGGGGTGCTTGTACATGATCCTTACAGATGGCTGGAAGACCCTGATGCAAATGAGGTCAAGGATTTTGTTGAGAAACAAATTTCCTTAACTGAATCCGTACTACAGACGTGTGAGACAAGAGGGAAACTGAGAGAGCGCATCACAACTCTTTTTGACCATCCTAGATATGGCTGTCCATACAAACGCGGTGATAAGTACTTCTATTTCTTCAACACTGGGCTCCAAGCTCAGAGTGTCCTGTATGTCCAGGAAAATCTGGAAGCAGAAGCACTGGTCTTGCTTGACCCTAACAAACTGAGTGTAGACGGAACAGTGGCATTAAGTGTGTCTGCCGTCAGTGAAAATGCAGAATTCTTAGCAGTTGGTTTAAGCGCTAGTGGTAGTGACTGGGTGAACATCAAGATTATCCGGGTGGCAGATAAAAGTACAGAACCTGATTCTCTTTCATGGGTGAAATTTTCATCCATTACCTGGACTCATGACAACAAAGGTTTCTTTTACAGCCGTTATCCAGCTCCCAAAGAAGGAGAAGGAATAGATGCAGGGACGGAAACGAATATCAATCTTCATCATCAACAGTTTTACCATTTCTTGGGCACTGATCAATCTGAAGATATTCTCTGCTGGAAAGATTCAGAACATCCCAAGTGGACAGTTGGCTCTGAAATAACTGAAGATGGAAAGTATGTTCTTTTATATGTGACAGAAGGCTGTGACCCGGTGAACAGGCTCTTTTATTGTGATCTTACCTCTCTTCCTCAAGGTCTTGAAGGTTTCAGAGGCAGGGAAGAGATGCTTCCTTTCCAAAAACTTATTGACAACTTTGAAGCACAGTATGATCTTGTTGCAAATGATGGCACTTTGTTCACTTTTCAAACCAATAAAAATGCTCCTAGGTATAAATTGGTTCGTGTAGACCTTTTGCAGCCGGAAGCTTGGAGTGACATTATTGGAGAATCTGAGAAGGACGTTCTTAAATCAGCTTGCTGTGTCAATGGAAATCAACTTCTATTAAGCTATTTAAGCGATGTCAAGTATGTTTTGCAAATACGAGACTTGCAATCTGGAAATTTGCTTCATAATTTGCCAATAGATATTGGGTCAGTTTCTGGAATATCAGGAAGGCGTAAAGACAAGGAGATATTTATTGGGTTTACAAGCTTTCTTACCCCTGGCATTATCTATCGATGCAATCTATATGTGGAAAAACCAGAATTAGTGGTTTTCAGAGAGACTGTTGTTCCAGGCTTTGATCGGACAGAGTTTGAGGCTAAACAGGTTTTCATAACCAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTATATGGTTATGGGGGCTTTAACTATAGCATCACTCCAAACTTCAGTGTTGGTCGTATTGTCATTTCAAGACATCTGGGGGCAGTTTTTGCAATTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCTCTTGCCAAAAAACAAAATTGCTTTGATGATTTCATATCTGCCGCTGAGTTCCTTGTCTCAGAGGGATATACACAACCTAAAAAGTTATGTATTGAAGGAGGCAGTAATGGTGGACTTCTTGTTGCAGCTTGCACAAATCAGAGACCTGACCTATTTGGTTGCACACTGGCTCATGTGGGTGTTATGGACATGTTGCGTTTTCATAAATTTACTATTGGCCATGCGTGGACTACTGATTATGGCTCTTCAGAAAAGGAAGACGAATTTCATTGGCTGATTAAATACTCACCATTGCATAATGTAAAGACACCATGGGACAAACCGGGACAGAATTTACAGTATCCTGCTATAATGTTATTGACAGCGGATCATGACGACCGTGTTGTGCCACTCCACTCTTTGAAGCTCCTAGCAACGATGCAATATGTTCTATGTAAGAACGTGGAGAATAGTCCACAGACTAACCCCATTATTGGCCGAATTGATACCAAATCTGGCCATGGTGCAGGAAGGCCAACCCAAAAGCTGATTGACGAAGCAGCAGACAGATATGCATTTATGGCCAAAATGGTCGGTGCATCATGGATTGACTAGCCTAGGTTGCGGACATTTTGGCAAAGCTTGAAGTTGTAGCTGGTCTGATATTGCAACAGATGGACAAGAAATTACTCTTTGTGACTTCGACAGTGTCACACAATCGTCATCCCAATTATTATGGAATTTATATCCAATACATATACATGGATTTCCATATTTTTAGGTTCAAAAGATTTTAGTTGGCAATGAATGCCACCAAAGAATTAAAGGGCTTCTTAAGGTGCCAGACTCGAAACTGGTGCTTATGAATGATATATGTGTTTTTTCAGGGAATCCAGTAGACACAAATCACCATATTGTGGAGTATACTGGAGATGACTGGTACACTGGCAATATGTCAAGAGTGTACAGTTTTCAATATAGGCGTACTGGTTTAGAAAAAAAGGCGATTCAAAGTTTTTTTAATATGCCCGGTTGTTGTTATCTGACCACTAAAAGCTAGCTTGCTGGGAATATTCCTTGCAAGACTCCAATGGAAGTATGTATGTGGTGAAATGTATAAGTAGTTAGCATGGCTAGATGAACAATGGATCAATGAAGATAAGTATATGGAGAAATCATGGCTATATGAGCAATGGATGAATGAAGATAACTATATGGAGAAATCAATAGTCATTTTTGTAAACTGTTTATGTTTAAGTCATTATTGTAAACTGTTTATGTTTAAGTTGATTATATTAGGATGCATTTCAGTTTTGTGAT

Ace file of the UniGene sp_v3.0_unigene7566

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative prolyl endopeptidase [Arabidopsis thaliana]	-	-	0.0	70%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	74%
Sma3	Putative prolyl endopeptidase	-	-	9.548e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prolyl oligopeptidase.	EC:3.4.21.26	-	9.548e-09	-

Source	Gene names
Sma3	At1g76140; CHLREDRAFT_103061; CHLREDRAFT_147894; F14O10.2; GSVIVT00015534001; OSJNBa0084K11.14; Os01g0108200; Os04g0561500; OsI_00077; OsI_16976; OsJ_00069; OsJ_15773; P0482C06.18; PHYPADRAFT_114923; PHYPADRAFT_178375; PHYPADRAFT_182722; PHYPADRAFT_199126

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76140.1	Prolyl oligopeptidase family protein chr1:28571187-28574852 FORWARD LENGTH=795	70%
RefSeq	Arabidopsis thaliana	NP_177741.3	prolyl oligopeptidase-like protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002307762.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1JSY1

Fln msg: your sequence is longer than subject: 782 - 727

Fln protein: MNLTVRLISPLARPAFSTLNRFVWKGIRLSTKGSLPSFINRSIRLCHAAEFNMGSLPAEERLDYPEARRDESVVDDYHGVLVHDPYRWLEDPDANEVKDFVEKQISLTESVLQTCETRGKLRERITTLFDHPRYGCPYKRGDKYFYFFNTGLQAQSVLYVQENLEAEALVLLDPNKLSVDGTVALSVSAVSENAEFLAVGLSASGSDWVNIKIIRVADKSTEPDSLSWVKFSSITWTHDNKGFFYSRYPAPKEGEGIDAGTETNINLHHQQFYHFLGTDQSEDILCWKDSEHPKWTVGSEITEDGKYVLLYVTEGCDPVNRLFYCDLTSLPQGLEGFRGREEMLPFQKLIDNFEAQYDLVANDGTLFTFQTNKNAPRYKLVRVDLLQPEAWSDIIGESEKDVLKSACCVNGNQLLLSYLSDVKYVLQIRDLQSGNLLHNLPIDIGSVSGISGRRKDKEIFIGFTSFLTPGIIYRCNLYVEKPELVVFRETVVPGFDRTEFEAKQVFITSKDGTQIPMFIVSKKDIALDGSHPALLYGYGGFNYSITPNFSVGRIVISRHLGAVFAIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEFLVSEGYTQPKKLCIEGGSNGGLLVAACTNQRPDLFGCTLAHVGVMDMLRFHKFTIGHAWTTDYGSSEKEDEFHWLIKYSPLHNVKTPWDKPGQNLQYPAIMLLTADHDDRVVPLHSLKLLATMQYVLCKNVENSPQTNPIIGRIDTKSGHGAGRPTQKLIDEAADRYAFMAKMVGASWID*

Protein Length: 783

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATACTCGCACCAGACCAATCCCTCAAAGCTTC_-_ATGAATCTCACAGTCCGTTTGATTAGCCCTTTGGCCAGGCCTGCTTTTTCTACATTGAACAGGTTCGTTTGGAAGGGCATCCGTCTGAGTACAAAGGGCAGTTTACCCTCATTTATTAACCGTTCGATTCGGCTGTGCCACGCTGCTGAATTCAATATGGGTTCGTTGCCCGCTGAAGAACGCTTGGACTATCCAGAAGCGAGGAGAGATGAGTCTGTAGTAGACGACTATCACGGGGTGCTTGTACATGATCCTTACAGATGGCTGGAAGACCCTGATGCAAATGAGGTCAAGGATTTTGTTGAGAAACAAATTTCCTTAACTGAATCCGTACTACAGACGTGTGAGACAAGAGGGAAACTGAGAGAGCGCATCACAACTCTTTTTGACCATCCTAGATATGGCTGTCCATACAAACGCGGTGATAAGTACTTCTATTTCTTCAACACTGGGCTCCAAGCTCAGAGTGTCCTGTATGTCCAGGAAAATCTGGAAGCAGAAGCACTGGTCTTGCTTGACCCTAACAAACTGAGTGTAGACGGAACAGTGGCATTAAGTGTGTCTGCCGTCAGTGAAAATGCAGAATTCTTAGCAGTTGGTTTAAGCGCTAGTGGTAGTGACTGGGTGAACATCAAGATTATCCGGGTGGCAGATAAAAGTACAGAACCTGATTCTCTTTCATGGGTGAAATTTTCATCCATTACCTGGACTCATGACAACAAAGGTTTCTTTTACAGCCGTTATCCAGCTCCCAAAGAAGGAGAAGGAATAGATGCAGGGACGGAAACGAATATCAATCTTCATCATCAACAGTTTTACCATTTCTTGGGCACTGATCAATCTGAAGATATTCTCTGCTGGAAAGATTCAGAACATCCCAAGTGGACAGTTGGCTCTGAAATAACTGAAGATGGAAAGTATGTTCTTTTATATGTGACAGAAGGCTGTGACCCGGTGAACAGGCTCTTTTATTGTGATCTTACCTCTCTTCCTCAAGGTCTTGAAGGTTTCAGAGGCAGGGAAGAGATGCTTCCTTTCCAAAAACTTATTGACAACTTTGAAGCACAGTATGATCTTGTTGCAAATGATGGCACTTTGTTCACTTTTCAAACCAATAAAAATGCTCCTAGGTATAAATTGGTTCGTGTAGACCTTTTGCAGCCGGAAGCTTGGAGTGACATTATTGGAGAATCTGAGAAGGACGTTCTTAAATCAGCTTGCTGTGTCAATGGAAATCAACTTCTATTAAGCTATTTAAGCGATGTCAAGTATGTTTTGCAAATACGAGACTTGCAATCTGGAAATTTGCTTCATAATTTGCCAATAGATATTGGGTCAGTTTCTGGAATATCAGGAAGGCGTAAAGACAAGGAGATATTTATTGGGTTTACAAGCTTTCTTACCCCTGGCATTATCTATCGATGCAATCTATATGTGGAAAAACCAGAATTAGTGGTTTTCAGAGAGACTGTTGTTCCAGGCTTTGATCGGACAGAGTTTGAGGCTAAACAGGTTTTCATAACCAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTATATGGTTATGGGGGCTTTAACTATAGCATCACTCCAAACTTCAGTGTTGGTCGTATTGTCATTTCAAGACATCTGGGGGCAGTTTTTGCAATTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCTCTTGCCAAAAAACAAAATTGCTTTGATGATTTCATATCTGCCGCTGAGTTCCTTGTCTCAGAGGGATATACACAACCTAAAAAGTTATGTATTGAAGGAGGCAGTAATGGTGGACTTCTTGTTGCAGCTTGCACAAATCAGAGACCTGACCTATTTGGTTGCACACTGGCTCATGTGGGTGTTATGGACATGTTGCGTTTTCATAAATTTACTATTGGCCATGCGTGGACTACTGATTATGGCTCTTCAGAAAAGGAAGACGAATTTCATTGGCTGATTAAATACTCACCATTGCATAATGTAAAGACACCATGGGACAAACCGGGACAGAATTTACAGTATCCTGCTATAATGTTATTGACAGCGGATCATGACGACCGTGTTGTGCCACTCCACTCTTTGAAGCTCCTAGCAACGATGCAATATGTTCTATGTAAGAACGTGGAGAATAGTCCACAGACTAACCCCATTATTGGCCGAATTGATACCAAATCTGGCCATGGTGCAGGAAGGCCAACCCAAAAGCTGATTGACGAAGCAGCAGACAGATATGCATTTATGGCCAAAATGGTCGGTGCATCATGGATTGACTAG___CCTAGGTTGCGGACATTTTGGCAAAGCTTGAAGTTGTAGCTGGTCTGATATTGCAACAGATGGACAAGAAATTACTCTTTGTGACTTCGACAGTGTCACACAATCGTCATCCCAATTATTATGGAATTTATATCCAATACATATACATGGATTTCCATATTTTTAGGTTCAAAAGATTTTAGTTGGCAATGAATGCCACCAAAGAATTAAAGGGCTTCTTAAGGTGCCAGACTCGAAACTGGTGCTTATGAATGATATATGTGTTTTTTCAGGGAATCCAGTAGACACAAATCACCATATTGTGGAGTATACTGGAGATGACTGGTACACTGGCAATATGTCAAGAGTGTACAGTTTTCAATATAGGCGTACTGGTTTAGAAAAAAAGGCGATTCAAAGTTTTTTTAATATGCCCGGTTGTTGTTATCTGACCACTAAAAGCTAGCTTGCTGGGAATATTCCTTGCAAGACTCCAATGGAAGTATGTATGTGGTGAAATGTATAAGTAGTTAGCATGGCTAGATGAACAATGGATCAATGAAGATAAGTATATGGAGAAATCATGGCTATATGAGCAATGGATGAATGAAGATAACTATATGGAGAAATCAATAGTCATTTTTGTAAACTGTTTATGTTTAAGTCATTATTGTAAACTGTTTATGTTTAAGTTGATTATATTAGGATGCATTTCAGTTTTGTGAT

Fln Alignment:

Contig7566___LDYPEARRDESVVDDYHGVLVHDPYRWLEDPDANEVKDFVEKQISLTESVLQTCETRGKLRERITTLFDHPRYGCPYKRGDKYFYFFNTGLQAQSVLYVQENLEAEALVLLDPNKLSVDGTVALSVSAVSENAEFLAVGLSASGSDWVNIKIIRVADKSTEPDSLSWVKFSSITWTHDNKGFFYSRYPAPKEGEGIDAGTETNINLHHQQFYHFLGTDQSEDILCWKDSEHPKWTVGSEITEDGKYVLLYVTEGCDPVNRLFYCDLTSLPQGLEGFRGREEMLPFQKLIDNFEAQYDLVANDGTLFTFQTNKNAPRYKLVRVDLLQPEAWSDIIGESEKDVLKSACCVNGNQLLLSYLSDVKYVLQIRDLQSGNLLHNLPIDIGSVSGISGRRKDKEIFIGFTSFLTPGIIYRCNLYVEKPELVVFRETVVPGFDRTEFEAKQVFITSKDGTQIPMFIVSKKDIALDGSHPALLYGYGGFNYSITPNFSVGRIVISRHLGAVFAIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISAAEFLVSEGYTQPKKLCIEGGSNGGLLVAACTNQRPDLFGCTLAHVGVMDMLRFHKFTIGHAWTTDYGSSEKEDEFHWLIKYSPLHNVKTPWDK-PGQNLQYPAIMLLTADHDDRVVPLHSLKLLATMQYVLCKNVENSPQTNPIIGRIDTKSGHGAGRPTQKLIDEAADRYAFMAKMVGASWID
I1JSY1______________LNYPPARRDDSVVEDYHGVKIADPYRWLEDPDAEEVKEFVAKQVQLTDSVLQKCETRGKLRETITKLFDHPRYDAPFRRANKYFYFHNTGLQPQNILYVQESLEGEAEALLDPNTFSEDGTVSLSTLSVSEDAKYLAYALSSSGSDWTTIKVMRIEDRNVEPDTLSWVKFSSISWTHDGKGFFYSRYPAPKDGEVVDAGTETNANLHHQLYYHFLGTDQSEDILCWRDPENPKYTFGGSVTDDGKYILLHIAEGCDPVNKLYYCDLSKLPNALEGFRNGNSLLPFAKLIDNFDAQYEAIANDDTVFTFLTNKDAPKYKIVRVDLKEPTAWADVLQESEKDVLESACAVNGNQLIVSYLSDVKYLLQVRDLKTGSLLHQLPIEIGSVSEISARREDSVVFIGFTSFLTPGIIYQCNLGTEIPDMKIFREIVVPGFDRSEFHVKQDFVTSKDGTKIPMFIVAKKDITLDGSHPCLLYGYGGFNINITPYFSVSRIVLTRHLGVVFSIANIRGGGEYGEEWHKAGSLARKQNCFDDFISAAEYLVSTGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDKEEEFHWLIKYSPLHNVRRPWEQHHDQSFQYPSTMLLTADHDDRVVPLHTLKLLATMQYVLCTSLEKSPQTNAIIGRIDCKSGHGAGRPTQKMIDEAADRYGFMAKVLEVHWIE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
238		66		33	0.997452
241			33	66	0.997452
242			33	66	0.997452
538		80		20	0.995493
694	33		66		0.997452
1029	25			75	0.996473
1393	20			80	0.999996
1400		80		20	0.999996
1403	20		80		0.999996
1543		16	83		0.994512
1544	83		16		0.994512
1551	83	16			0.994512
1552			83	16	0.994512
1553	83			16	0.994512
1555			16	83	0.994512
1556		16		83	0.994512
1559	80			20	0.995493
1560		20	80		0.995493
1561	20		80		0.995493
1564	80	20			0.995493
2256		12	87		0.992554
2258	87			12	0.992554
2438	16			83	0.994512
2470	87			12	0.992554
2472	87		12		0.992554
2473	87		12		0.992554
2846	14			85	0.993533
3080		20		80	0.995493
3092		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1766	1777	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain