SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7561

Length: 1924 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7561

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=C0PT31_PICSI	-	-	73%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g55020; At1g67560; At1g72520; At3g45140; AtLOX6; B1168A08.24; B1168A08.28-1; B1168A08.28-2; CM-LOX1; CM-LOX2; F12B7.11; F14C21.3; F14C21.54; F28G4.10; F28P22.29; GSVIVT00004618001; GSVIVT00008869001; GSVIVT00013069001; GSVIVT00019960001; GSV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	phytoene dehydrogenase activity	GO:0016166	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72520.1	LOX4 PLAT/LH2 domain-containing lipoxygenase family protein chr1:27308611-27312589 FORWARD LENGTH=926	67%
RefSeq	Arabidopsis thaliana	NP_177396.1	lipoxygenase 4 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002331196.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg: your sequence is shorter than subject: 455 - 924

Fln protein: DHILGQLNGMSIEQALEANKLFILDYHDAYLPVIKEINEQDGRKAYATRTIFFLSPLNTLKPIAIELSLQLPSPGCQSKRVFTPANDATTYWRWQLAKAHVCANDAGVHQLVNHWLRTHAAMEPYVISAHRHLSAMHPIFKLLQPHMRYTLEINALARQSLINAEGVIESFFTPGKYCMDLSAAAYRTHWRFDLEALPADLIRRGMAVEDPTQPHGIKLVIEDYPYASDGLLIWSSIKEWVEEYVGFYYSDAGTVQNDGELQAWWYEIKNKGHADKRNETWWPKLETKEDLSGILTTMIWIASGQHAALNFGQYPYGGYVPNRPCLMRRLIPEEEDPEYQNFLSNPQKYFLKSLPSLLQALNTMAVVDTLSTHSADEEYLGQRQNSVWTSDLNAIDAFHKFSATMQGVEKIIHQRNKDLNLRNRNGAGVLPYELLIPTSKPGVTGRGVPNSVSI*

Protein Length: 456

Fln nts: AAGACCATATCCTAGGACAGCTCAATGGAATGTCTATTGAACAGGCTCTTGAAGCAAATAAATTGTTCATTTTGGACTATCATGATGCATATCTTCCTGTTATCAAAGAAATCAATGAACAGGATGGTAGAAAAGCATATGCAACAAGAACAATTTTCTTCTTATCTCCTCTCAACACTCTTAAGCCTATTGCAATCGAGCTTAGCCTTCAGCTACCCTCTCCTGGGTGTCAGTCAAAGCGGGTTTTCACTCCTGCAAATGATGCAACCACTTACTGGCGTTGGCAACTAGCCAAAGCTCATGTTTGTGCCAACGATGCTGGAGTTCACCAGCTAGTGAATCATTGGTTGCGGACGCATGCTGCCATGGAGCCCTATGTTATTTCAGCACATAGGCATCTAAGTGCTATGCACCCCATATTCAAATTGCTTCAACCACACATGCGCTACACCCTGGAAATCAATGCATTAGCTCGACAGAGTTTGATTAATGCAGAGGGTGTTATTGAATCCTTTTTTACACCGGGCAAGTACTGCATGGATCTAAGTGCAGCTGCATACCGCACGCATTGGCGTTTTGATTTGGAAGCTTTGCCTGCAGACTTGATCAGAAGGGGTATGGCAGTGGAGGATCCTACTCAGCCACATGGTATCAAACTCGTGATTGAAGACTACCCCTATGCATCTGATGGTCTCCTTATCTGGTCATCTATCAAAGAATGGGTAGAAGAATATGTTGGATTTTACTACTCAGACGCTGGCACTGTACAGAATGATGGTGAACTTCAAGCTTGGTGGTATGAAATTAAGAACAAGGGACATGCTGATAAAAGAAATGAGACATGGTGGCCAAAATTGGAGACAAAGGAAGATCTTTCTGGTATCCTTACCACGATGATATGGATTGCATCAGGACAGCATGCTGCTCTTAACTTTGGTCAATATCCATATGGAGGGTACGTCCCAAACCGGCCTTGTCTAATGAGGAGGTTGATACCTGAGGAGGAAGATCCAGAGTATCAAAATTTCCTTTCAAATCCACAGAAATACTTCTTAAAGTCTCTGCCAAGTCTGCTCCAAGCACTTAATACAATGGCTGTTGTAGATACTCTTTCTACCCATTCAGCAGATGAAGAGTACTTGGGCCAAAGACAAAACTCAGTCTGGACTAGTGACCTAAATGCCATTGATGCCTTTCACAAATTTTCTGCAACTATGCAGGGTGTAGAGAAAATTATTCATCAGAGAAACAAAGACTTGAATCTGAGGAATAGGAATGGTGCTGGGGTTCTCCCATATGAACTATTGATACCGACATCAAAACCAGGTGTAACTGGTCGGGGAGTCCCAAACAGTGTTTCAATTTAG___TGGTCCAGGCTATTCAACTGAATGGATTCTGGAATTCAGTGCTTTACTTAACTAGTTGAGCGGCAGACGACTTCTTTTTACCTTCGGGATATTGTTCCATGTTGATAAAGCTACTTTCCACTCGAGCAGATGACTTTTAGGATTGGGTATATACTTACAGTAGCCAATTTTTAGGTTTTGCATTTAAGAAAAAAAGCAACCTATAGAGAAAATAATGTTAGGTGTAGTTATAGTAGGGATCAATTAGAACTCCATTTAGCAAATTCAATGTTTTGACATATTTATTTACAGAAGAATTGAGCAGCGGGACAGAGAAAGATGTATGAATTCAATCACAATTTAGGGTCCTAGACTCCTACTTCTAGTAACTTGTCCAATTCAATTTAGATAGGGGGGATTCATGAACCCCATGTTGCAAAATTCGAATTATTAAGGGAGGGACAAGTTTCCCTCCTGTTGTAAACTGTGTATAGTAAGGTACAGCATTTGTACGTTGCCAATGGTCATAATTCCAAAAGTCATTCAGTTGTTTATTTGAATCTTGTCCCCCTTTATTC

Fln Alignment:

Contig7561___DHILGQLNGMSIEQALEANKLFILDYHDAYLPVIKEINEQDGRKAYATRTIFFLSPLNTLKPIAIELSLQLPSPGCQSKRVFTPANDATTYWRWQLAKAHVCANDAGVHQLVNHWLRTHAAMEPYVISAHRHLSAMHPIFKLLQPHMRYTLEINALARQSLINAEGVIESFFTPGKYCMDLSAAAYRTHWRFDLEALPADLIRRGMAVEDPTQPHGIKLVIEDYPYASDGLLIWSSIKEWVEEYVGFYYSDAGTVQNDGELQAWWYEIKNKGHADKRNETWWPKLETKEDLSGILTTMIWIASGQHAALNFGQYPYGGYVPNRPCLMRRLIPEEEDPEYQNFLSNPQKYFLKSLPSLLQALNTMAVVDTLSTHSADEEYLGQRQNSVWTSDLNAIDAFHKFSATMQGVEKIIHQRNKDLNLRNRNGAGVLPYELLIPTSKPGVTGRGVPNSVSI
C0PT31______________EHVEGELNGMSVEQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTTAGTLKPIVIELSLPPTVTGAQSKQIFTHGHDATSYWLWKLAKSHVCANDAGYHQLVNHWLRTHACMEPYIIAANRQLSCMHPIFKLLQPHLRYTMEINALARQSLINGGGVIESCFTPDKYSMELSASAYDRKWRFDMEALPADLIARGMAVEDPNQPHGLRLVIEDYPYAADGLLIWSAIEEWVEDYVSIYYSEPNSVQTDIELQAWWDEILNKGHYDKRNASWWPNLKTKEDLAGILTTMIWVASGQHAALNFGQYPYGGYVPNRPCIMRKLIPNETDPEYKSFLSNPQNFFLSSMPTQLQATKTMAVVDTLSTHSPDEEYLGERHESKWTNDGRALEAFQRFSAKIQEVEKIIEQRNEDLSNKNRNGAGVLPYELLLPSSGPGVTGRGIPNSVSI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
959		33		66	0.997452
1461		15	84		0.999986
1520	87		12		0.992554
1521		85	14		0.993533
1522			14	85	0.993533
1561	33		33		0.997753
1617		33		66	0.997452
1688	33		66		1.0
1759	11		88		0.923564
1813		37		62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain