SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7552

Length: 1382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7552 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Properoxidase n=4 Tax=Picea RepID=Q0JW35_PICAB	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G44970.1	Peroxidase superfamily protein chr1:17002237-17003563 FORWARD LENGTH=346	60%
RefSeq	Arabidopsis thaliana	NP_175117.1	peroxidase 9 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002310274.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMX2

Fln msg:

Fln protein: MARMKHIRGLTLQFQSLLITGAALFLWIQTSDAQDCNGLSHHFYQKSCPNAQAIIKSVVSDAVKKEARMAASLLRLHFHDCFVQGCDASILLDDTASFTGEKTANPNRNSVRGFEVVDKIKSKLEEACPGVVSCADILAVAARDSVGFSVGPHWEVLLGRRDSKTASKSGANNDIPAPNSTHQTLETKFKLQGLNVVDLVALSGSHTIGLARCTSFKARLYNQTVNGKPDPTLDTSYLKKLRAVCPQTGTDDNRTTPLDPVTPIKFDINYYRNLVEGTGLLRSDEILYSTKGSKTASLVRFYSTNTHAFFKQFAASMIKMGNISPLTGSSGEIRKNCRKRN*

Protein Length: 343

Fln nts: ATGGGGATATAAGTATCATACATGCTTAATGCCATGGGGATACTCTTCTGCATGATAAGGAAATAGTTTAGGTCAGTA_-_ATGGCACGGATGAAACATATTCGCGGCCTTACACTGCAGTTTCAGTCTCTGCTGATCACTGGAGCGGCATTGTTTCTATGGATCCAGACATCGGATGCTCAGGACTGTAATGGTCTGAGTCATCACTTTTATCAGAAGTCCTGTCCAAACGCCCAGGCTATCATTAAATCTGTAGTTTCAGATGCTGTCAAAAAGGAAGCGAGAATGGCTGCTTCCTTGCTTCGTCTGCATTTTCATGACTGTTTTGTTCAGGGCTGTGATGCTTCAATTCTGCTTGATGACACTGCTAGTTTCACAGGGGAGAAGACAGCAAATCCTAACAGAAATTCTGTAAGAGGCTTTGAAGTAGTGGATAAGATCAAAAGCAAATTGGAGGAAGCATGTCCTGGGGTGGTCTCATGTGCTGACATTCTTGCTGTGGCAGCCCGTGATTCTGTAGGCTTTAGTGTGGGTCCGCATTGGGAGGTTCTACTGGGCAGGAGGGACTCAAAGACTGCAAGCAAGAGCGGTGCAAACAACGACATTCCTGCACCCAACTCAACCCATCAGACTCTGGAAACCAAATTCAAGCTCCAAGGTCTCAATGTGGTTGACCTAGTTGCTCTATCAGGCTCCCATACAATAGGTTTAGCGCGATGCACAAGCTTCAAGGCGAGGCTGTACAATCAGACTGTAAATGGGAAACCTGACCCTACACTCGACACGTCGTACTTAAAGAAGCTGAGGGCCGTGTGCCCTCAAACTGGCACCGACGATAATCGAACCACACCATTGGATCCGGTCACTCCCATAAAATTCGACATCAACTACTACAGGAACCTGGTAGAAGGAACAGGGTTGCTGCGCTCAGATGAGATTCTGTACTCCACCAAAGGAAGTAAAACAGCGAGTTTAGTTAGATTCTACAGCACCAACACGCACGCATTTTTCAAGCAATTCGCTGCATCAATGATAAAGATGGGCAACATCAGTCCTCTCACCGGGTCTAGCGGTGAAATTAGGAAGAACTGTCGCAAAAGGAATTGA___CAGGCAGACCACTGTGCTGCCGTCTGCATCTGCATGTGCACTGCCATTGTTAGTTGTTTTCTATTAATGAACGAAAAGGCCCACCTCGACCAGCTTCATATGAGCATCCATAATTTCTCTCTTTGCTCGGTGATTTCGTTCCGTCCAATAGTTGTAGTTTTCTTCTGTAATATCATCGCCATGGAAGTATATACTTATACAATATCTCACCGTTCATATTTATACGCAGGCATAATCTCTGGCAATTGCCAATCTTTAATGTAGAAGTTCATGTGTTT

Fln Alignment:

Contig7552___MARMKHIRGLTLQFQSLLITGAALFLWIQTSDAQDCNGLSHHFYQKSCPNAQAIIKSVVSDAVKKEARMAASLLRLHFHDCFVQGCDASILLDDTASFTGEKTANPNRNSVRGFEVVDKIKSKLEEACPGVVSCADILAVAARDSVGFSVGPHWEVLLGRRDSKTASKSGANNDIPAPNSTHQTLETKFKLQGLNVVDLVALSGSHTIGLARCTSFKARLYNQTVNGKPDPTLDTSYLKKLRAVCPQTGTDDNRTTPLDPVTPIKFDINYYRNLVEGTGLLRSDEILYSTKGSKTASLVRFYSTNTHAFFKQFAASMIKMGNISPLTGSSGEIRKNCRKRN
A9NMX2______________MAQIKHSPGLTLQFLSVLITGLALMLWIQTVDAQSCNGLSHHFYYKSCPKAQAIIKSVVEDAVRKEARMAASLLRLHFHDCFVKGCDGSILLDDTSSFTGEKTANPNKNSVRGFGVVDQIKCELEKACPGVVSCADILAVAARDSVGFSGGPFWKVLLGRRDSRSASKSGANNDIPGPNSTHQTLETKFKRQGLNVVDLVALSGAHTIGLARCSSFKARLYNQTVNGKPDPTLDTTYLKQLRAVCPQTGTDDNQTTPLDPVTPIKFDIDYYDNVVAGKGLLASDEILYSTKGSRTVGLVESYSTSTHAFFKQFAASMIKMGNINPLTGSHGEIRKNCRRMN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
12		66		33	0.997452
721		15		85	1.0
722			15	85	1.0
727		90	9		0.999842
1253	25		75		0.996473
1345		66	33		0.997452
1346	33	66			0.997452
1347		66		33	0.997452
1349	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain