SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7513

Length: 2557 nt

UniGene Fasta

>sp_v3.0_unigene7513
CGTCGTGACCTTGGCTGTCACTCAGGCTGTAGCCGTTTCACATCATTGCTTTTTGGCTTTCGTTTCGGATCGTCCGTCGGTATTTCTGTAAATTGATTGATTGCAATGCAATGGCATTTTTCCATGGCCATATAATTCCTCTCGGATATCCAGCCATGGCTACTGTGTGACTGCAATAATTTGTTCTTTCTTTTTTCCTTTTCTTTTCTTTAATTTGCAGCCTAGCCTTAGTACCCCTGCAAAAATGCCAGGCGTATCAGCCGAGCAGCACCTGTTTTCTGGTTCTGTTTCTCCTGTTGTATTCGGCAACCGTTGTTGTCCTGTAAGTCGCGCCTTCGAGTCCCAGGACCTGCCAAAGTCTTTCTATGCTGAATCCCCTGAGCTTTCCCCTTATGCCTTGACAAACATGGAATATTTGCAAAGCCTGAATTTATTTTCTGAGACTTCTCCCAAATCTGAAAAATCAAGATACAGTAAAGATTCTGCTTCGGTCCAGAAGCTCTTCAACAAGAGCCTCTCCTTCGGCAGCAACGGCCTCGGTGTCGACTTCGGCTTTACCACTACCGGGATGGAGTCTGAGAATTTTTTGGTGAGTCCGAGGACTGTGATCGAATCCCCGGACGGCATTTCTTCTCTGCATAAATTCTTGCCCTCCAACAACGAAGAAGAGGCTTCTTGGCCCGCTGTGGACGCGTATTCGTGCGACGAATTCCGAATGTATGAGTTCAAAGTTCGCCGATGCATGCGCGGCCGGTCACATGACTGGACAGAGTGCCCGTTCGCGCATCCCGGAGAAAAGGCTCGTCGCAGAGACCCTAGGCGTTTTCATTACTCTGGCACTGGCTGTCCTGATTTCAGAAAAGGAAGCTGCAGGCGTGGAGATGCCTGCGAGTATGCTCACGGAGTCTTTGAATGCTGGCTTCATCCGGCGCGTTATCGCACGCAACCTTGCAAAGATGGACGCAATTGCAGAAGGCGCGTATGTTTCTTTGCGCACACGCCTGAGCAATTGCGCCTCCTGCCCGGAGCATCGCAGGCTCAGTCTCATGCCACATCCAATTTTGGCAACAGAAATTCTTTTCAGATGAGGAATGCCGTTAGCGGATCCTATGACGGATCCCCTTTGCGTTATGCGGTCACTGCAGCAGCATCGCTCGACGGGGCTTTTGGTTACGATGGCTTTGACGGGAATACTTCACCGCGCGGACCCTTGAATTACCTCTGCAAGGCAAAGGTGAAGGCCAAAGCATCACAGATTTCATCTCCGACTTCTACTTTAGTTGGCCATTCTTATTCCCCGCCACCCTTGTCTCCGCCTTTGTCACCCTCTGCTTCTCCTCCCATATCGCCCGGTAGTTGCCTCGATTCCCCTGTGAATTACGCTAATTCTGCTGTCAAATCTTTCCCAAAGTCTGAAACTAACACTGCTCCCGGTTCTTTTACTCCCCGTGGTCATTTAGAGAAGCTAATTTCGATCCCTCCGCCAAATCTCGACCCAAGCCCCTTGTCTCCAGCTGTGCATTCTCCGGCCCCGTCCTCAAAGCTGATCATGGAGGGTCTTATAAACACTCTGCAGCGCATGGAGATAAACGGAGACACTCTTCCGTGGCGTCAACAGCAACAGCAATTTAATCTGCCGGGTCGTTCTTGTCTCAGTTTACCTGGCGCACCTCGCTGGGATGACGATGCCTGGGAAGTCGAAGCGGCCGAGGACGGATCAATACAGCGGGTCGAATCTGGTAAACAATTGAGAGCCAAGATTTACGGCAGATTGACCAGGGAATCCACACTGCAAGATAATAACAATACTAATACTGAATATTCTCCCGATTTGGGTTGGGTGAATGAGCTCGTGATGTAGAAAATTCCATATATTTTGCAGGCTACTGAAACAAGCCTGCATAAGACGATCAAGTCTCAAGAATTCTTACAGTAATTGTAAATACGTATATTAACATATTCAGCATGCAGGTTTTAGAGTATTTGGGGTTCTAAGGTCGATTGCTGCTGCTTACAGTTCTGTGAAATTTCAAGGGTTCGATTCGGGATTTTGATATTTGGTTGTGTTCTTGCGGGGTGGAGACAGTATTTGTTCAGGGTATTCCCCGACTAGTGAGTATGGTCTCCGCTTCCATGATGTCAGCAGTCGCAAAGACAATTTTTGGCCGAAAACGGTCACATACCATCAAATGCTGCTCCTCTAATTAATTGCTGATATTCTCAGTACCTTGTACGAACTATTAGCAAGCAAAGCTTACTTTCTCTGGACAATTACCCGGGAAAAGCTGTTGAATTGTTTTTGCATATAATTTTATTTTGAGTGCTAGATTTGCCCTTCCACAGGCGGGGGCTGTAGGATCCTTGTACCAAGTCTAGATTACTGTTAATTGATGTCTTATCGTAAGATTTGGATGACATCAATCGTCTAATTTCTTGTGTAATTGAACTGGATATAGCCTGTATTAGATTCAGTCATTAGCAGATGTTGCATATTATTCAATAATCACTTGCTGCTCTGTACAAATCTGTGTTTTTTTAATGTATAATCTGGGCTGAT

Ace file of the UniGene sp_v3.0_unigene7513

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger CCCH domain-containing protein 35 n=2 Tax=Oryza sativa RepID=C3H35_ORYSJ	-	-	0.0	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Zn-finger transcription factor	-	-	7.582e-15	-

Source	Gene names
Sma3	AT3G55980; Aa1_7500; Aa6_7500; Al5g07500; At2g19810; At2g25900; At2g40140; At2g41900; At3g55980; At4g29190; At5g12850; At5g44260; Bd5g07500; Bo_7500; CHLREDRAFT_119209; CHLREDRAFT_182666; CHLREDRAFT_205729; Cr_7500; F17A13.10; F17H15.7; F27K19.160; F6F22.

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G19810.1	CCCH-type zinc finger family protein chr2:8550419-8551498 FORWARD LENGTH=359	68%
RefSeq	Arabidopsis thaliana	NP_179571.1	zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002309525.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMK4

Fln msg: your sequence is shorter than subject: 539 - 581

Fln protein: MPGVSAEQHLFSGSVSPVVFGNRCCPVSRAFESQDLPKSFYAESPELSPYALTNMEYLQSLNLFSETSPKSEKSRYSKDSASVQKLFNKSLSFGSNGLGVDFGFTTTGMESENFLVSPRTVIESPDGISSLHKFLPSNNEEEASWPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTGCPDFRKGSCRRGDACEYAHGVFECWLHPARYRTQPCKDGRNCRRRVCFFAHTPEQLRLLPGASQAQSHATSNFGNRNSFQMRNAVSGSYDGSPLRYAVTAAASLDGAFGYDGFDGNTSPRGPLNYLCKAKVKAKASQISSPTSTLVGHSYSPPPLSPPLSPSASPPISPGSCLDSPVNYANSAVKSFPKSETNTAPGSFTPRGHLEKLISIPPPNLDPSPLSPAVHSPAPSSKLIMEGLINTLQRMEINGDTLPWRQQQQQFNLPGRSCLSLPGAPRWDDDAWEVEAAEDGSIQRVESGKQLRAKIYGRLTRESTLQDNNNTNTEYSPDLGWVNELVM*

Protein Length: 540

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGCTGTAGCCGTTTCACATCATTGCTTTTTGGCTTTCGTTTCGGATCGTCCGTCGGTATTTCTGTAAATTGATTGATTGCAATGCAATGGCATTTTTCCATGGCCATATAATTCCTCTCGGATATCCAGCCATGGCTACTGTGTGACTGCAATAATTTGTTCTTTCTTTTTTCCTTTTCTTTTCTTTAATTTGCAGCCTAGCCTTAGTACCCCTGCAAAA_-_ATGCCAGGCGTATCAGCCGAGCAGCACCTGTTTTCTGGTTCTGTTTCTCCTGTTGTATTCGGCAACCGTTGTTGTCCTGTAAGTCGCGCCTTCGAGTCCCAGGACCTGCCAAAGTCTTTCTATGCTGAATCCCCTGAGCTTTCCCCTTATGCCTTGACAAACATGGAATATTTGCAAAGCCTGAATTTATTTTCTGAGACTTCTCCCAAATCTGAAAAATCAAGATACAGTAAAGATTCTGCTTCGGTCCAGAAGCTCTTCAACAAGAGCCTCTCCTTCGGCAGCAACGGCCTCGGTGTCGACTTCGGCTTTACCACTACCGGGATGGAGTCTGAGAATTTTTTGGTGAGTCCGAGGACTGTGATCGAATCCCCGGACGGCATTTCTTCTCTGCATAAATTCTTGCCCTCCAACAACGAAGAAGAGGCTTCTTGGCCCGCTGTGGACGCGTATTCGTGCGACGAATTCCGAATGTATGAGTTCAAAGTTCGCCGATGCATGCGCGGCCGGTCACATGACTGGACAGAGTGCCCGTTCGCGCATCCCGGAGAAAAGGCTCGTCGCAGAGACCCTAGGCGTTTTCATTACTCTGGCACTGGCTGTCCTGATTTCAGAAAAGGAAGCTGCAGGCGTGGAGATGCCTGCGAGTATGCTCACGGAGTCTTTGAATGCTGGCTTCATCCGGCGCGTTATCGCACGCAACCTTGCAAAGATGGACGCAATTGCAGAAGGCGCGTATGTTTCTTTGCGCACACGCCTGAGCAATTGCGCCTCCTGCCCGGAGCATCGCAGGCTCAGTCTCATGCCACATCCAATTTTGGCAACAGAAATTCTTTTCAGATGAGGAATGCCGTTAGCGGATCCTATGACGGATCCCCTTTGCGTTATGCGGTCACTGCAGCAGCATCGCTCGACGGGGCTTTTGGTTACGATGGCTTTGACGGGAATACTTCACCGCGCGGACCCTTGAATTACCTCTGCAAGGCAAAGGTGAAGGCCAAAGCATCACAGATTTCATCTCCGACTTCTACTTTAGTTGGCCATTCTTATTCCCCGCCACCCTTGTCTCCGCCTTTGTCACCCTCTGCTTCTCCTCCCATATCGCCCGGTAGTTGCCTCGATTCCCCTGTGAATTACGCTAATTCTGCTGTCAAATCTTTCCCAAAGTCTGAAACTAACACTGCTCCCGGTTCTTTTACTCCCCGTGGTCATTTAGAGAAGCTAATTTCGATCCCTCCGCCAAATCTCGACCCAAGCCCCTTGTCTCCAGCTGTGCATTCTCCGGCCCCGTCCTCAAAGCTGATCATGGAGGGTCTTATAAACACTCTGCAGCGCATGGAGATAAACGGAGACACTCTTCCGTGGCGTCAACAGCAACAGCAATTTAATCTGCCGGGTCGTTCTTGTCTCAGTTTACCTGGCGCACCTCGCTGGGATGACGATGCCTGGGAAGTCGAAGCGGCCGAGGACGGATCAATACAGCGGGTCGAATCTGGTAAACAATTGAGAGCCAAGATTTACGGCAGATTGACCAGGGAATCCACACTGCAAGATAATAACAATACTAATACTGAATATTCTCCCGATTTGGGTTGGGTGAATGAGCTCGTGATGTAG___AAAATTCCATATATTTTGCAGGCTACTGAAACAAGCCTGCATAAGACGATCAAGTCTCAAGAATTCTTACAGTAATTGTAAATACGTATATTAACATATTCAGCATGCAGGTTTTAGAGTATTTGGGGTTCTAAGGTCGATTGCTGCTGCTTACAGTTCTGTGAAATTTCAAGGGTTCGATTCGGGATTTTGATATTTGGTTGTGTTCTTGCGGGGTGGAGACAGTATTTGTTCAGGGTATTCCCCGACTAGTGAGTATGGTCTCCGCTTCCATGATGTCAGCAGTCGCAAAGACAATTTTTGGCCGAAAACGGTCACATACCATCAAATGCTGCTCCTCTAATTAATTGCTGATATTCTCAGTACCTTGTACGAACTATTAGCAAGCAAAGCTTACTTTCTCTGGACAATTACCCGGGAAAAGCTGTTGAATTGTTTTTGCATATAATTTTATTTTGAGTGCTAGATTTGCCCTTCCACAGGCGGGGGCTGTAGGATCCTTGTACCAAGTCTAGATTACTGTTAATTGATGTCTTATCGTAAGATTTGGATGACATCAATCGTCTAATTTCTTGTGTAATTGAACTGGATATAGCCTGTATTAGATTCAGTCATTAGCAGATGTTGCATATTATTCAATAATCACTTGCTGCTCTGTACAAATCTGTGTTTTTTTAATGTATAATCTGGGCTGAT

Fln Alignment:

Contig7513___SFYAESPELSPYALTNMEYLQSLN------LFSETSPKSEKSRYSKDSASVQKLFNKSLSFGSNGLGV---DF------GFTTTGMESENFL---VSPRTVIESPDG--ISSLHKFLPSNNEEEASWPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTGCPDFRKGSCRRGDACEYAHGVFECWLHPARYRTQPCKDGRNCRRRVCFFAHTPEQLRLLPGASQAQSHATSNFGNRNSFQMRNAVSGSYDGSPLRYAVT-----AAASLDGA-------FGYDG--FDGN-TSPRGPLNYLC-KAKVKAKAS-QISSPTSTLVGHXXXXXXXXXXXXXXXXXXXXXXXCL-----DSPVNYANSAV--KSFPKSETNTAPGSFTPRGH----LEKXXXXXXXXXXXXXXXXAVHSP---------APSSKLIMEGLINTLQRMEINGD-----TLP-----WRQQQQQFNLPGRSC-----------LSLPGAP---RXXXXXXXXXXXXXGSIQRVESGKQLRAKIYGRLTRESTLQDNNNTNTEYSPDLGWVNELV
B8LMK4______________SFFSDSNGYPNAVIGNGDFVSGIEFQGPELLMDQSQPGAEGFNFSNNETRC--LFSKSLSFGSSPSSYRSDDFHHDSFAGSWSEAVKDEAFLSVPMSSSTHVGAMGGSSLAALHKYLPSNNEDEASWPAVDAYSCDEFRMYEFKVRRCMRGRSHDWTECPFAHPGEKARRRDPRRFHYSGTACPDFRKGSCRRGDACEFAHGVFECWLHPARYRTQPCKDGRNCRRRVCFFAHTPEQLRLLPGAS---------VGSRNGFQSKN-----HEGSNLRHAVSFDGALAVAAYDGGGSSPVNHFGNGGGYFDGSQTGGSSPRGYLCGKSNLSCTSQFQMSSPTSTLVGHAHSPPPLSPPLSPSGSPRESSPNWTYGVPNSSPVAAANKPLHHKSFSFVNMDASSVSASPVVHPSFGLQSPRRHHSITIPPTHDSRGLSSPVSSLSNDGSSQSPSNAVSDLIGSLQSLDLNGGGSSTATVPSGPSQWLQAEASYAALHRSCSPRASNLRHCSYSLPSTPTKSRWEKNWESDFFAQEEPLQRVESGRELRAKIYSRLSRENP----DNINAE-SPDLGWVNELV

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
22		66		33	0.997452
23			33	66	0.997452
24		66	33		0.997452
25	66		33		0.997452
83	33	66			1.0
352			33	66	0.997452
455	36			63	1.0
535	16		83		1.0
659	7	76		15	0.999983
754		85		14	0.993533
1492		81	18		0.999994
1774	10			90	0.90298
1775	10			90	0.90298
1912	83		16		0.999991
2192	93		6		0.99903
2312	11			88	0.923564
2313	11			88	0.923564
2495	14			85	0.993533
2496		14		85	0.993533
2502	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain