SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7509

Length: 3672 nt

UniGene Fasta

>sp_v3.0_unigene7509
CTAATCCTCAGTTCGGCTAATGACATTTGTTACCACAATATTTTACCTGAATCCAATCTCATCCTCGAGCTGAAATCATGGATCATGTACACAGTGCGCCCTATTTCCTTGCCTTAACCCCAGTATACTCTTCGACCGCAATCTAATCTTTGGTCAGGTCAAATTTAAGGCGGATCTCAATTATGATTCACAGTCAAAGCTTTGAACTGATAATCTACTGCCCACGGTCGAAACAATTTTGTTCTCCGTAGGTCGCGGTAAAAGGTTAGGAGTTAGGCCCTGCTTTCATTATAAAAGGGTTCCGAAATTTGGCTGAGTGGTAAATTTGGCTGAGTATTGACGTCCACCCGAAAAGTTTAGTTAGAATGTCACAACAAATCTGACATGACATGTAGCACCCTTTTTGTTCGGGCACTCTAGTTCCTTATGTTCCATCTGCATCCTTCAACTGAATTCAACTCTGTATGTCTTCTGGTGGGCAGAGCGCAGAAGTAACTGAACAACAATTGCAAGATTCTGGATGGAGTAAAGATTCACGTCTCTTTGGCTACTCTGTAGTGGCAGGAACAACGGGTGTTTACATCTTCTACCAGGAGATGAAGTAGATCATGGACTGAAGCTGCACTTTATCTAGAGGAGCATCAGGAGAACTGAATCACTGTCATCTGTCTGATATGGCTCTTGGGAAATATGGCCGCAAGGAAAAACGTCCGTCTTCTTGTTTTTCATCAGTGGCAGTGGTGGTTTTTGTGGGATTCTGCATGCTTGGAGCGTGGGCGTTAATGTCCATATCTGTGGTGCCAGCACAGAGAATTAGCTCACCTGTTGCAAGTACTAATGCAAAAGTGAACGAGAAGTTCAATGATTCGCAGGATTTTGAAGACGGCCAAGGAGACCTACCGGACAAAGCCATCAAAGGGGATGACAGTGCCGAAAAGACATCAGAATTTGACCAAAAGGCGCAATCTCTTTCAGGTGCTGCAGATGAATTAGGAAAGGTACCAAGAGAGCAACCTGATGAAGGAAAAACTGGTGAAGAAACGAATATGAATCGGAGAGATGATGAAAAGCTGAGTGCAGCGGGGAATAAAGATGCTGATGAAAAATTATTTGAGAAATTAGATGATAAAGATAAGAATTGGGAAAACGAAAAGATTAATGATGGTTTACCAGGAAAGGTTGAAGGTGATGCCGGTGATAGTAGGGGTGGCCAGACTAAGGAGGATGTGGCAAATCTGAATGAAAATGGACAGTCGAAAAAAGGACAAAAGGTTATGGATTCCGGGTTGGATGATACATTGCCAAATACTGGAGAGTCTGAGATTCTGAAGGAAAACAAACTTGAATCAGCGGACTGGGAGACAAATGACGCTGAAGCTAAGAAAGAAAAGTTTAGTCAAGCCGTATCCAACTCAGATGATGAGAAAAAATCTTCACAATCTGAGGATCGGACTACAGATCAGAAGTTCTCGGTGGACACAAAAACTAGCAAGCAGGCTGAATACAGTGAGGAAGAGTCAAAGGAATTGAAGAAGGAACAAAAAGAACAGGGTAATGGAGATCTAGGGCACCAATACAGCTGGAAACTTTGCAATGTCTCATCTGGTCCAGACTACATTCCTTGTCTTGATAATGAAATGGCTATCAGACAACTTCGCAGTACTGCACATTATGAGCATCGAGAAAGGCATTGTCCCGAAGTTCCCCCTACATGCCTAGTTCCTCTTCCTGAAGGATATAAGAAACCAATAACATGGCCCACAAGCAGAGCTAAGATATGGTACAACAATGTTCCTCACACCAAACTTGCGGTTGTAAAAAGAGCTCAAAACTGGCTTAGGGTATCAGGGAAATATCTTACTTTCCCTGGTGGTGGAACACAGTTCAAACACGGAGCTCTTCATTACATTGATTTTGTTGAAAAGGCTCTACCAGACATTTCATGGGGTAAGCATAGCCGAGTGGTTCTGGATGTTGGCTGTGGTGTTGCCAGTTTTGGAGGCTTCCTTTTTGAAAAAGATGTTTTAACCATGTCCTTTGCACCTAACGATGAGCATGAAGCACAAGTTCAGCTTGCTCTTGAACGAGGAATACCTGCAATATCAGCTGTGATGGGCACCCAAAGACTTCCCTTTCCAAGTGTTATCTTTGATATTGTGCACTGTGCAAGATGTCGGGTTCCATGGCATGCCGATGGTGGAAGGCTCCTTTTGGAGCTAAATCGCATTTTAAGACCCGGGGGTTATTTTGTATGGTCAGCTACTCCTGTTTACAAAAAAGGTCAAGAGGATGTTCAGATCTGGAAAGCTATGTCTGATTTGACGGCATCGATGTGTTGGAACCTCGTTGCAAAAAAAAATGATAGGGTCAATGCAGTTGGTGTTGCGATTTATCAAAAACCTACATCAAATTCATGTTATGAATTGAGAAGGAAGCAAGATCCTCCTATGTGTGATGAGACTGATGATCCCAATGCTGCATGGTATATTCCCATGAAGAGCTGCTTGCATAAGGTGCCAACTTCTGATGGTGAGCGTGGGACTGTGTGGCCAGAAGATTGGCCTCTAAGGCTCGAAAAACCTCCCTTCTGGTTGTACAACATGCAAGCTGGATTATATGGAAAACAAGCAGCAATAGACTTCACATCAGACACTGATCACTGGAGACGTGTTGTCACCAAGTCTTACCTTACTGGGTTCGGAATCAACTGGTCTACTGTTCGGAATGTTATGGATATGAAAGCAGTTTATGGAGGGTTTGCTGCAGCTTTAGCAGGACAGCATGTTTGGGTAATGAATGTTGTGCCAATAGATTCTCCTGACACACTTCCAATCATCTACGACCGTGGTTTATTTGGTATTTATCATGATTGGTGTCAGTCTTTCAGTACATACCCCAGGACATATGACCTTTTGCATGCTGATCACCTGTTCTCTAAGGTTAAGAAAAGGTGCCAATTGGAACCTGTAATGGCAGAGGTTGATCGGATATTACGGCCAGGAGGCTCTGCAATTTTTCGAGATAAATTAGATATAATAAATGAATTGGAGACCCTGATAAAATCATTGCACTGGGAGGTTCGACTCACATACTCAAAAGAGAAGGAAGGGATCCTGTGTGCACAGAAGACTATGTGGCGCCCGGCATCGTCCTGAATGTTTGCAAAAAATGTTTCATTTTTTACCAGGTTGACATGATATACGTGGCCCTGGAATTTAATCTACCTTGATTTTTTTTGCTCAAGCAAAGGGTAGAGCGGGTGTATGTTTTGTCTGTGTTCTTACTGACATGGTCATTAGATTGTTTGGCTTTATGTGCGGAGCCCCTCAGATGAAGCAGATCAATTTTATTCAAAATTTGTAAGGTGGGCATAGTCTCCAACCTTTCGTGTTATCTATTGATCCGTTAGGGCTTTGGCTAAATTCTGCAAGGAGTTGGCCGTGTTGAGAAAATCTATTGATTTATGTAACATTATATGAAAGCTTGAATTGAATTTTGCATTATTTTTACTAGTGGTAACTGTACTCCATAGTTGAATGCATTCGATAAATGTCCACGTGGTACCCAGCATTGTCTTGGATACAAAAAATGCTCATTTCTTACCAGGTCGATATGATATATGTAGGCCTATAATTTAATCTACCTTGACTTCTTTTAGCTCAAGCAAAGGTT

Ace file of the UniGene sp_v3.0_unigene7509

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	ATP binding protein, putative	-	-	3.892e-24	-

Source	Gene names
Sma3	AT1G31850; AT4G19120; AT4g00750; AT4g14360; AT4g19120; At1g04430; At1g04430/F19P19.11; At1g19430; At1g26850; At1g29470; At1g31850; At1g77260; At2g34300; At2g39750; At2g40280; At2g43143; At2g43200; At2g45750; At3g10200; At3g23300; At3g51070; At4g00740; At4

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein chr5:25624965-25628257 FORWARD LENGTH=829	53%
RefSeq	Arabidopsis thaliana	NP_201208.2	putative methyltransferase PMT26 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002309924.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM2

Fln msg: your sequence is longer than subject: 827 - 601

Fln protein: MALGKYGRKEKRPSSCFSSVAVVVFVGFCMLGAWALMSISVVPAQRISSPVASTNAKVNEKFNDSQDFEDGQGDLPDKAIKGDDSAEKTSEFDQKAQSLSGAADELGKVPREQPDEGKTGEETNMNRRDDEKLSAAGNKDADEKLFEKLDDKDKNWENEKINDGLPGKVEGDAGDSRGGQTKEDVANLNENGQSKKGQKVMDSGLDDTLPNTGESEILKENKLESADWETNDAEAKKEKFSQAVSNSDDEKKSSQSEDRTTDQKFSVDTKTSKQAEYSEEESKELKKEQKEQGNGDLGHQYSWKLCNVSSGPDYIPCLDNEMAIRQLRSTAHYEHRERHCPEVPPTCLVPLPEGYKKPITWPTSRAKIWYNNVPHTKLAVVKRAQNWLRVSGKYLTFPGGGTQFKHGALHYIDFVEKALPDISWGKHSRVVLDVGCGVASFGGFLFEKDVLTMSFAPNDEHEAQVQLALERGIPAISAVMGTQRLPFPSVIFDIVHCARCRVPWHADGGRLLLELNRILRPGGYFVWSATPVYKKGQEDVQIWKAMSDLTASMCWNLVAKKNDRVNAVGVAIYQKPTSNSCYELRRKQDPPMCDETDDPNAAWYIPMKSCLHKVPTSDGERGTVWPEDWPLRLEKPPFWLYNMQAGLYGKQAAIDFTSDTDHWRRVVTKSYLTGFGINWSTVRNVMDMKAVYGGFAAALAGQHVWVMNVVPIDSPDTLPIIYDRGLFGIYHDWCQSFSTYPRTYDLLHADHLFSKVKKRCQLEPVMAEVDRILRPGGSAIFRDKLDIINELETLIKSLHWEVRLTYSKEKEGILCAQKTMWRPASS*

Protein Length: 828

Fln nts: CTAATCCTCAGTTCGGCTAATGACATTTGTTACCACAATATTTTACCTGAATCCAATCTCATCCTCGAGCTGAAATCATGGATCATGTACACAGTGCGCCCTATTTCCTTGCCTTAACCCCAGTATACTCTTCGACCGCAATCTAATCTTTGGTCAGGTCAAATTTAAGGCGGATCTCAATTATGATTCACAGTCAAAGCTTTGAACTGATAATCTACTGCCCACGGTCGAAACAATTTTGTTCTCCGTAGGTCGCGGTAAAAGGTTAGGAGTTAGGCCCTGCTTTCATTATAAAAGGGTTCCGAAATTTGGCTGAGTGGTAAATTTGGCTGAGTATTGACGTCCACCCGAAAAGTTTAGTTAGAATGTCACAACAAATCTGACATGACATGTAGCACCCTTTTTGTTCGGGCACTCTAGTTCCTTATGTTCCATCTGCATCCTTCAACTGAATTCAACTCTGTATGTCTTCTGGTGGGCAGAGCGCAGAAGTAACTGAACAACAATTGCAAGATTCTGGATGGAGTAAAGATTCACGTCTCTTTGGCTACTCTGTAGTGGCAGGAACAACGGGTGTTTACATCTTCTACCAGGAGATGAAGTAGATCATGGACTGAAGCTGCACTTTATCTAGAGGAGCATCAGGAGAACTGAATCACTGTCATCTGTCTGAT_-_ATGGCTCTTGGGAAATATGGCCGCAAGGAAAAACGTCCGTCTTCTTGTTTTTCATCAGTGGCAGTGGTGGTTTTTGTGGGATTCTGCATGCTTGGAGCGTGGGCGTTAATGTCCATATCTGTGGTGCCAGCACAGAGAATTAGCTCACCTGTTGCAAGTACTAATGCAAAAGTGAACGAGAAGTTCAATGATTCGCAGGATTTTGAAGACGGCCAAGGAGACCTACCGGACAAAGCCATCAAAGGGGATGACAGTGCCGAAAAGACATCAGAATTTGACCAAAAGGCGCAATCTCTTTCAGGTGCTGCAGATGAATTAGGAAAGGTACCAAGAGAGCAACCTGATGAAGGAAAAACTGGTGAAGAAACGAATATGAATCGGAGAGATGATGAAAAGCTGAGTGCAGCGGGGAATAAAGATGCTGATGAAAAATTATTTGAGAAATTAGATGATAAAGATAAGAATTGGGAAAACGAAAAGATTAATGATGGTTTACCAGGAAAGGTTGAAGGTGATGCCGGTGATAGTAGGGGTGGCCAGACTAAGGAGGATGTGGCAAATCTGAATGAAAATGGACAGTCGAAAAAAGGACAAAAGGTTATGGATTCCGGGTTGGATGATACATTGCCAAATACTGGAGAGTCTGAGATTCTGAAGGAAAACAAACTTGAATCAGCGGACTGGGAGACAAATGACGCTGAAGCTAAGAAAGAAAAGTTTAGTCAAGCCGTATCCAACTCAGATGATGAGAAAAAATCTTCACAATCTGAGGATCGGACTACAGATCAGAAGTTCTCGGTGGACACAAAAACTAGCAAGCAGGCTGAATACAGTGAGGAAGAGTCAAAGGAATTGAAGAAGGAACAAAAAGAACAGGGTAATGGAGATCTAGGGCACCAATACAGCTGGAAACTTTGCAATGTCTCATCTGGTCCAGACTACATTCCTTGTCTTGATAATGAAATGGCTATCAGACAACTTCGCAGTACTGCACATTATGAGCATCGAGAAAGGCATTGTCCCGAAGTTCCCCCTACATGCCTAGTTCCTCTTCCTGAAGGATATAAGAAACCAATAACATGGCCCACAAGCAGAGCTAAGATATGGTACAACAATGTTCCTCACACCAAACTTGCGGTTGTAAAAAGAGCTCAAAACTGGCTTAGGGTATCAGGGAAATATCTTACTTTCCCTGGTGGTGGAACACAGTTCAAACACGGAGCTCTTCATTACATTGATTTTGTTGAAAAGGCTCTACCAGACATTTCATGGGGTAAGCATAGCCGAGTGGTTCTGGATGTTGGCTGTGGTGTTGCCAGTTTTGGAGGCTTCCTTTTTGAAAAAGATGTTTTAACCATGTCCTTTGCACCTAACGATGAGCATGAAGCACAAGTTCAGCTTGCTCTTGAACGAGGAATACCTGCAATATCAGCTGTGATGGGCACCCAAAGACTTCCCTTTCCAAGTGTTATCTTTGATATTGTGCACTGTGCAAGATGTCGGGTTCCATGGCATGCCGATGGTGGAAGGCTCCTTTTGGAGCTAAATCGCATTTTAAGACCCGGGGGTTATTTTGTATGGTCAGCTACTCCTGTTTACAAAAAAGGTCAAGAGGATGTTCAGATCTGGAAAGCTATGTCTGATTTGACGGCATCGATGTGTTGGAACCTCGTTGCAAAAAAAAATGATAGGGTCAATGCAGTTGGTGTTGCGATTTATCAAAAACCTACATCAAATTCATGTTATGAATTGAGAAGGAAGCAAGATCCTCCTATGTGTGATGAGACTGATGATCCCAATGCTGCATGGTATATTCCCATGAAGAGCTGCTTGCATAAGGTGCCAACTTCTGATGGTGAGCGTGGGACTGTGTGGCCAGAAGATTGGCCTCTAAGGCTCGAAAAACCTCCCTTCTGGTTGTACAACATGCAAGCTGGATTATATGGAAAACAAGCAGCAATAGACTTCACATCAGACACTGATCACTGGAGACGTGTTGTCACCAAGTCTTACCTTACTGGGTTCGGAATCAACTGGTCTACTGTTCGGAATGTTATGGATATGAAAGCAGTTTATGGAGGGTTTGCTGCAGCTTTAGCAGGACAGCATGTTTGGGTAATGAATGTTGTGCCAATAGATTCTCCTGACACACTTCCAATCATCTACGACCGTGGTTTATTTGGTATTTATCATGATTGGTGTCAGTCTTTCAGTACATACCCCAGGACATATGACCTTTTGCATGCTGATCACCTGTTCTCTAAGGTTAAGAAAAGGTGCCAATTGGAACCTGTAATGGCAGAGGTTGATCGGATATTACGGCCAGGAGGCTCTGCAATTTTTCGAGATAAATTAGATATAATAAATGAATTGGAGACCCTGATAAAATCATTGCACTGGGAGGTTCGACTCACATACTCAAAAGAGAAGGAAGGGATCCTGTGTGCACAGAAGACTATGTGGCGCCCGGCATCGTCCTGA___ATGTTTGCAAAAAATGTTTCATTTTTTACCAGGTTGACATGATATACGTGGCCCTGGAATTTAATCTACCTTGATTTTTTTTGCTCAAGCAAAGGGTAGAGCGGGTGTATGTTTTGTCTGTGTTCTTACTGACATGGTCATTAGATTGTTTGGCTTTATGTGCGGAGCCCCTCAGATGAAGCAGATCAATTTTATTCAAAATTTGTAAGGTGGGCATAGTCTCCAACCTTTCGTGTTATCTATTGATCCGTTAGGGCTTTGGCTAAATTCTGCAAGGAGTTGGCCGTGTTGAGAAAATCTATTGATTTATGTAACATTATATGAAAGCTTGAATTGAATTTTGCATTATTTTTACTAGTGGTAACTGTACTCCATAGTTGAATGCATTCGATAAATGTCCACGTGGTACCCAGCATTGTCTTGGATACAAAAAATGCTCATTTCTTACCAGGTCGATATGATATATGTAGGCCTATAATTTAATCTACCTTGACTTCTTTTAGCTCAAGCAAAGGTT

Fln Alignment:

Contig7509___DYIPCLDNEMAIRQLRSTAHYEHRERHCPEVPPT----CLVPLPEGYKKPITWPTSRAKIWYNNVPHTKLAVVKRAQNWLRVSGKYLTFPGGGTQFKHGALHYIDFVEKALPDISWGKHSRVVLDVGCGVASFGGFLFEKDVLTMSFAPNDEHEAQVQLALERGIPAISAVMGTQRLPFPSVIFDIVHCARCRVPWHADGGRLLLELNRILRPGGYFVWSATPVYKKGQEDVQIWKAMSDLTASMCWNLVAKKNDRVNAVGVAIYQKPTSNSCYELRRKQDPPMCDETDDPNAAWYIPMKSCLHKVPT-SDGERGTVWPEDWPLRLEKPPFWLYNMQAGLYGKQAAIDFTSDTDHW-RRVVTKSYLTGFGINWSTVRNVMDMKAVYGGFAAALAGQHVWVMNVVPIDSPDTLPIIYDRGLFGIYHDWCQSFSTYPRTYDLLHADHLFSKVK------KRCQLEPVMAEVDRILRPGGSAIFRDKLDIINELETLIKSLHWEVRL----TYSKEKEGILCAQKTMWRPASS
A9NXM2______________DYSPCEDPRRSSHFSRERNVY--RERHCP--PPDQNLLCLIPPPLDYKIPLPWPESLHKIWHSNMPHNKIADRKGHQGWMKEEGPYFIFPGGGTMFPDGAIQYIQKLKQYLP-ISGGT-IRTALDVGCGVASFGGYMLKEDILTMSFAPRDSHKSQIQFALERGIPAFLAMLGTHRLPFPAHVFDLIHCSRCLVPFTAYNGSYMIEMDRLLRSGGYFVISGPPVQWPKQE--KEWADLQDLARTLCYELVIVDGN------TAIWKKPSNNSCFSLKSVPGPYLCDEHDDPNVGWYVPLKACISRFPSLKERENNLIELPKWPSRLNDPP------QRATDIKNFLDIFKADTRRWQRRVTYYKNVLNLKLGSSSVRNLMDMNAGFGGFAAAVIADPVWIMNVVPAYTSNTLGVIYDRGLIGVYHDWCEAFSTYPRTYDFIHAIGIESLIRDLSRGGDRCSLVDLMIEMDRILRPEGTVVVRDTPKVIDRVAKIASAIHWSTEVYDTEPESNGKEKLLVATKQFWTLSST

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
848	33		66		0.997452
849	80			20	0.995493
850	60			40	1.0
851		60	40		1.0
853	60		40		1.0
912	90		10		0.90298
926		90	10		0.90298
928		10	90		0.90298
936	90			10	0.90298
937	90			10	0.90298
938			90	10	0.90298
939	90			10	0.90298
1049		10	89		1.0
1124		13		86	1.0
1145	90	10			0.90298
1203			12	87	0.992554
1242	20			80	0.995493
1247	80			20	0.995493
1248	20			80	0.995493
1250	20		80		0.995493
1252	20	80			0.995493
1254	25		75		0.996473
1256	33	66			0.997452
1485	33		66		1.0
1489	66		33		0.997452
1812	16		83		0.994512
2004		85		14	0.993533
2148		85	14		0.993533
2175		25		75	1.0
2283	16			83	0.994512
2286	83			16	0.994512
2287			83	16	0.994512
2445		16		83	0.994512
2792		10		90	0.90298
2815		14		85	0.999981
2837		14		85	0.999981
2885		10		89	0.999919
3014	4			87	0.999414
3132		7		92	0.999664
3295		90	9		0.999842
3416		12		87	1.0
3499	6		93		0.999264
3500		90	3		0.997544
3502		11		88	1.0
3517			36	63	1.0
3585	50	41			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain