SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7503

Length: 1810 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7503

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DELLA domain GRAS family transcription factor rga-like protein n=2 Tax=Populus trichocarpa RepID=B9GV61_POPTR	-	-	0.0	67%
FL-Next	tr=SCARECROW; Pinus sylvestris (Scots pine).	-	-	0.0	38%
Sma3	DELLA protein	-	-	1.13505e-43	-

Source	Gene names
Sma3	At1g14920; At1g66350; At2g01570; At3g03450; At5g17490; BoGAI; BrGAI; CRY; D8; DELLA; DELLAa; DELLAb; F10B6.34; F2I9.19; GAI; GAI-A; GAI-B; GAI1; GAI2; GAIP; GAIPB; GAL1; GAL2; GRAS85; GRAS86; GRAS87; GRAS88; GRS; GSVIVT00030538001; K3M16.60; L1a; L1b; L3a

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	negative regulation of gibberellic acid mediated signaling pathway	GO:0009938	Biological Process	-
Sma3	negative regulation of seed germination	GO:0010187	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	phloem transport	GO:0010233	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	regulation of oxygen and reactive oxygen species metabolic process	GO:0080010	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G14920.1	GAI, RGA2 GRAS family transcription factor family protein chr1:5149414-5151015 FORWARD LENGTH=533	62%
RefSeq	Arabidopsis thaliana	NP_172945.1	DELLA protein GAI [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002302975.1	DELLA domain GRAS family transcription factor rga-like protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q0MRQ2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 454 - 842

Fln protein: S*PWLSLMMSYRNHHHRRLRPQLCCCRAPATLRLKSNPG*TIWKRMLQEESKKRYRVCDPQLSERTVVVMGADPHESGVRLVHTLMACAEAVQRGNLAIAREMVKEVRILASAQGGAMSKVATYFAEALARRIYGFLPQDTLRFNQNDPLSDFLQFHFYQTCPYLKFAHFIANQAILDAFSGHQQVHVIDFNLKQGIQWPALIQALALRPGGPPAFRLTGIGPPQPDGTDALQEVGTRLHQFAESVNVKFSFRGYVATSLADIKPWMLDARPELEAVAVNSILELHRLLEDPIPGRPSAIDRVLASIWSLKPKILTVVEQEADHNRPVFLDRFTEALHYYSTVFDSLEARGLQAQSEEQVMSEVYLGREICNIVACERSERVERHEPLLNWSIRLRNAGFWPIPLGSNAFKQASMLLSLFSGGEGYRVEENNGCLTLGWHSRPLIAASAWQRC*

Protein Length: 455

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATGTCCTACAGGAACCACCACCACAGGAGGCTTCGCCCTCAACTCTGCTGCTGCAGAGCTCCAGCAACTCTTCGCTTGAAGTCCAATCCGGGCTAGACCATCTGGAAGAGGATGTTACAGGAAGAGAGCAAAAAGCGTTACCGTGTCTGCGACCCGCAGCTTTCGGAGCGAACCGTGGTAGTAATGGGGGCAGACCCGCACGAATCCGGAGTCCGTCTCGTGCACACGCTGATGGCCTGCGCAGAAGCGGTGCAGCGCGGTAATTTGGCCATCGCGCGGGAAATGGTGAAAGAAGTGAGAATTCTGGCTTCAGCACAGGGCGGGGCAATGAGCAAGGTCGCCACATATTTTGCCGAGGCTCTTGCCCGGCGAATCTATGGGTTTCTCCCTCAGGACACCTTGCGGTTCAACCAGAACGATCCCTTGTCCGATTTTCTGCAATTTCATTTCTACCAAACCTGCCCTTATCTCAAATTCGCGCACTTCATAGCCAACCAGGCCATTCTGGATGCCTTCTCCGGGCACCAACAGGTTCATGTCATAGACTTCAATCTGAAACAGGGGATCCAATGGCCGGCCTTGATACAGGCACTGGCTCTTCGCCCCGGCGGGCCACCGGCTTTCAGGCTAACCGGAATCGGCCCACCCCAACCCGACGGAACCGATGCCTTGCAGGAGGTCGGCACGAGGCTCCACCAATTTGCAGAGTCCGTCAATGTAAAATTCTCCTTCCGTGGCTATGTTGCCACAAGCCTCGCCGACATCAAACCATGGATGCTCGACGCCCGGCCCGAGCTCGAGGCTGTTGCAGTGAATTCTATCCTTGAGCTCCATCGTCTCCTGGAGGACCCCATCCCCGGACGACCCAGTGCCATCGATAGAGTACTCGCTTCCATCTGGAGCCTGAAGCCCAAGATCTTGACAGTGGTTGAACAGGAGGCCGACCACAACCGCCCTGTTTTCTTGGATCGATTCACAGAGGCACTGCACTATTATTCGACAGTTTTTGATTCCCTGGAGGCGCGCGGGTTGCAGGCCCAGAGCGAAGAGCAGGTGATGTCGGAAGTCTATCTGGGTCGAGAAATTTGCAACATTGTAGCCTGTGAGCGATCGGAACGGGTGGAAAGGCACGAACCTCTCTTGAATTGGAGCATTCGCTTGAGAAACGCTGGCTTCTGGCCTATTCCTTTGGGATCCAATGCTTTCAAGCAGGCCAGCATGTTGCTCAGTCTCTTCTCAGGTGGAGAAGGATATAGGGTTGAGGAGAATAATGGGTGTCTAACACTTGGTTGGCACAGCAGACCTCTAATTGCTGCTTCTGCCTGGCAACGCTGTTAA___TCATCTATCTCACAGCATCAAGAAGGTGATAGGTGGATCAAGTACCCAGCAATTATTATTGCAGCAGCAGCATCTTTTCAAGGAACCCACAACAGCCCAATTCAATTCCGGATCAGGTCAGCTAAAGCAAAATTAACGAGTCCGTAGATTACCTACCAGCGCCGAGAATCTATTCATGTATCATACTGAAGTTCTTGAGTTATTATAAGCAAAATTAGATTACACTTATTATTAGCTCGACTCAGTGCCCTCTACGACTGCATAAATCACTGAGCGATATAATTTGTAATCTCTCAAACACTTTGAACTTCAAATGTCAGAAGCATTGAATCTCACCCGGCCTATGTCATAAGTAAGTTATTATTGTTCACAGAGATCTCTGCCAATGTTGCATCGTCCTGATGTAATCAAGAGAATTGAATGCAAAGCAACTTCCCATCATCAAT

Fln Alignment:

Contig7503___ESGVRLVHTLMACAEAVQRGNLAIAREMVKEVRILASAQGGAMSKVATYFAEALARRIYG-----FLPQDTLRFNQNDPLSDFLQFHFYQTCPYLKFAHFIANQAILDAFSGHQQVHVIDFNLKQGIQWPALIQALALRPGGPPAFRLTGIGPPQPDGTDALQEVGTRLHQFAESVNVKFSFRGYVATSLADIKPWMLDARPELEAVAVNSILELHRLLEDPIPGRPSAIDRVLASIWSLKPKILTVVEQEADHNRPVFLDRFTEALHYYSTVFDSLEARGLQAQSEEQVMSEVYLGREICNIVACERSERVERHEPLLNWSIRLRNAGFWPIPLGSNAFKQASMLLSLFSGGEGYRVEENNGCLTLGWHSRPLIAASAWQ
Q0MRQ2______________EEGLHLLALLLQCAEAVSADNFEEANTILPQITELSTPYGNSVQRVAAYFAEAMSARLVSSCIGMYSPLPPIHMSQSQKIVNAFQV-FNGISPFVKFSHFTANQAIQEAFEREQRVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRITGLG----TSLEALEATGKRLSDFAHTLNLPFEFHP-VADKVGKLDPERLKVN-RGDALAVH---WLHHSLYD-VTGSDTNTLRLLQ---RLSPKVITVVEQDLSHGGS-FLSRFVEAIHYYSALFDSLGASYPEDSHDRHLVEQQLLSREIKNILAVGGPARTGEIK-FDNWRDQLKQTGFKPISLAGNAATQATLLLGMFP-CQGYTLMEENGTLKLGWKGLCLLTASAWR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1182	90		10		0.90298
1197	10		90		0.90298
1200			90	10	0.90298
1271			11	88	0.923564
1463		80		20	0.995493
1682	16			83	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1425	1436	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain