SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7490

Length: 1000 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7490

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%

Source	Gene names
Sma3	At4g31160; GSVIVT00032390001; OsI_18041; POPTRDRAFT_1116776; RCOM_0205780;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31160.1	DCAF1 DDB1-CUL4 associated factor 1 chr4:15145936-15152939 FORWARD LENGTH=1883	0.0	49%
RefSeq	Arabidopsis thaliana	NP_194845.4	DDB1- and CUL4-associated factor-1 [Arabidopsis thaliana]	0.0	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M086

Fln msg: Separated hits, possible frame ERROR between 216 and 231, Distance to subject end: 1531 aas, your sequence is shorter than subject: 333 - 1883

Fln protein: NDADAKTEQSGDEGIEQKVHDLMDRITASARSAPNPRLLHALASILEQEDARFMQESGHSSPSNARSSHDIxxxxxxLLRENDEFFELVSSKFLSDTRYTIGVHAAAARLLLACPSTSMYPHDIEGAVLDNIKRWAMEDVIKSSGEECHSKLEAAGQEASDAEMLKTYATGLLPLALNGNSPVVEDVLTCGLSAKLMRFLRIRVLGETSTNQKDITLGPENRQTTGSSSIRAREDIKGRMRHVADVTRTDFSRLAEEALPEDQNADKDIEKVITIKEKCTEECSEDGEEINRMKDAVDMLDEVPGTLHVEDDNVEQTAEDKRHRKEWREGKSK

Protein Length: 334

Fln nts: AACGATGCAGATGCGAAGACGGAGCAGTCTGGCGACGAGGGTATTGAGCAGAAAGTGCACGATTTAATGGACCGGATCACAGCTTCTGCACGCTCGGCCCCCAATCCTCGTCTGCTGCACGCCCTGGCTTCGATTCTTGAACAGGAGGATGCGAGATTTATGCAGGAATCTGGTCACTCTTCTCCCAGCAATGCTCGATCTTCTCATGATATAGGxxxxxxxxxxxxxxxTTTGCTAAGGGAAAATGACGAATTTTTTGAGCTAGTGTCATCCAAATTTCTTTCAGATACAAGATATACAATTGGTGTCCATGCTGCTGCAGCAAGGTTACTTCTTGCTTGTCCATCAACATCAATGTATCCTCATGATATTGAAGGTGCTGTTTTGGACAATATCAAACGCTGGGCCATGGAAGACGTGATAAAGTCTTCCGGTGAGGAATGCCATTCGAAGCTAGAAGCAGCTGGACAAGAAGCTAGTGATGCAGAAATGTTAAAGACATATGCTACTGGACTTCTTCCATTAGCCCTAAATGGGAATAGTCCAGTTGTAGAGGATGTTCTTACATGTGGATTATCAGCAAAGCTTATGCGTTTTCTTCGGATACGGGTGCTAGGCGAGACTAGTACAAATCAGAAAGATATAACTTTGGGCCCTGAAAATAGGCAAACTACTGGAAGTAGTAGTATCAGAGCAAGGGAAGATATCAAAGGTAGGATGAGACATGTGGCTGATGTTACCCGGACAGATTTTTCCAGACTAGCTGAGGAAGCTTTGCCAGAAGATCAAAATGCAGATAAAGATATTGAAAAAGTGATTACCATAAAAGAGAAGTGCACTGAAGAATGCTCTGAAGATGGCGAGGAGATAAATAGGATGAAGGATGCTGTAGATATGCTAGATGAAGTGCCTGGCACACTTCATGTAGAAGATGATAATGTAGAGCAAACTGCTGAAGATAAAAGACACAGGAAAGAATGGCGTGAAGGGAAGTCCAAATT

Fln Alignment:

Contig7490___ADAKTEQSGDEGIEQKVHD--------LMDRITASARSAPNPRLLHALASILEQEDARFMQESGHSSPSNARSSHDIGxxxxxLLRENDEFFELVSSKFLSDTRYTIGVHAAAARLLLACPSTSMYPHDIEGAVLDNIKRWAMEDVIKSSGEECHSKLEAAGQEASDAEMLKTYATGLLPLALNGNSPVVEDVLTCGLSAKLMRFLRIRVLGETSTNQKDITLGPENRQTTGSSSIRAREDIKGRMRHVADVTRTD
Q9M086______________ANSTGEPNPEEGEEQSVEDELIAKAQKLMEDITSVANN-PNPNILHALSQLLESQESLFLEENGHF--SNARGSHNSGxxxxxLIRENDEFFELISSTFLSENSYSTAVKAASARLLMNCSLTWMYPHVFDDAVTENFKNWVMEEAVKFPGE------DSAKKEASDFEMLKTYSTGLLALSLASRGQIVEDVLTSGLSAKLMHYLRVRVLKEPSTSRIHTT-------ETKHVSLKTKEEGRSRVRKIVDTVEGD

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
320	90		10		0.90298
362	10			90	0.90298
366			90	10	0.90298
398	77		22		0.999999
416		66		33	1.0
417	22		77		0.999999
433	10		90		0.90298
436	90		10		0.90298
441		10		90	0.90298
445	90		10		0.90298
447	10			90	0.90298
448		90	10		0.90298
449	10		90		0.90298
500	85		14		0.993533
526	25	75			0.996473
528	25	75			0.996473
530	75			25	0.996473
838	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain