SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7461

Length: 2307 nt

UniGene Fasta

>sp_v3.0_unigene7461
ATGGAGGTGGAATGGATCCTGATTGTATGCGGCAATGTATGAGCTTGGGTTACTCAGTGAAAACTAATAGCACAACTATAGGACAATATGGCAATGGATTCAAAACCAGTACCATGAGATTAGGTGCAGATGTGATTGTTTTCAGTCGCTCTGGTCGTGGCAGCCCTCCCACACAGAGTATTGGGCTTCTTTCTTACACATTTTTGAGGAGAACAGGGCAAGATGACACCATTGTGCCAATGGTTGATTTTGTTCTTTCACAAGATTTGAGAAAAGCAACAATGTTAATTCGTAGCACAAAGGATGATTGGTTGAAAAACTTAACCACAATCCTCCAATGGTCTCCTTATAAAACAGAAGATGAACTTATGAATCAGTTTGAAGACATTGGACCTCATGGAACAAAAATTGTAATTTACAACCTTTGGCTTAATGACGATGGTGTCCTTGAACTTGACTTTGACAAAGACAAGGAGGATATACGCCTTCGAGAAATAGGCAAAATAGAAAAACCCATGCCATCACAAAAAGCATTGCTTCAATCCAGCATTTCATATCGCCTACGTTATTCATTACGTGTCTATGCTTCTATTCTTTATCTAAAAAAACTACCAAATTTCAGTATTATTTTAAGGGGAAACCGTGTTGAGCATCACTACATTGCTGATGATCTGAAGTTTCCTAAAGTAGTCATCTACAAGCCACAACTTGGGATTGTTTCTAAGGAGGTGTCTGTGGCAACAACTATAGGATTTGCACCAGAAGCACCTTCTATTAATATTCAAGGATTCAACGTGTATCACAAAAATCGCTTGATCATGCCCTTTTGGAAAATCTGGCCAAGTAATACAGATAGCAGAGGAAGGGGTGTTGTAGGTGTTCTTGAAGCAAACTTTATAGAGCCTGCACATGACAAACAGGATTTTGAAAGAACAGCTATACTACTTCGGTTAGAAGCGAGACTTAAACAAATGACTGCTGACTACTGGAGACTGCATTGTGGATTAATAGGTTATCAAGCAAAATCTTCCACTGATGGTCAACGCAATTCTTTGCCTTCTACCGTAGTTGAGAAACCTTATTCAGCAAGTGTTGTTCCAAGATGCTCAATTTCCCAGAATATTGTTTCTCATAATTTGGCTGCTTCAAAATCTCTTCCCAATCATGGGCAAATAGCAGGACCTGTTCTGGCAGACCTTGGTGACCATAATCAACAGCTCCGTCAAGAAACCAGCAGAGATCATTGTGGAAAGTTGCATGTTCCCAACCTAGGGGTGACATTAGAATCCAAGGAACTATTGAGTGTACAATCTCATGCAATAACCAGCTCTATTCTTGTTGAGGAAAAACCAGATTTAACACTGCTATCTGCTACGGAAACTAGCAGATTTACTGCACAACCTAGCAAGATGAGCCTGGATAAAGTTGTTTCTGTTTCTAATGGCAATCCTCTACTAGATCCTGGATTAGACATTCTTCGAAAGGGTGATGAGGAAAAGAGAGGTAATTTTGATCAAGAACTGGATAATCCAAGCAATGCTGATGATAACTCTTCTTTGGATACATCTAAGAGGAAAGCATCATCTGTGATGCTCTGTAATTCCGAAGACCTTAAGAGACACAGGAATTGTGAAGGAATTCTCATGTCTGGAACGCTGCATGAACAGATTGCTGACGTATGGAATCAACTAAAGAGATCTAGGTGTACAGGGAATAAATATTCGCAAGCAACGGTTTTTCTGCCTGGCAAATTTGTTGAGAAGGTTACTGATCATAATATACAATTATTCATGAGATGTGAACAACACAGACATAACGAAACTCAGTTACACCAAGTGATAGCAAGGCTAGAGAATGAGTTGATGATGGCAAGAAGGAAGTTTGCACAACTGAGATCTTCTGTGGAACTCCAGAATAAAAAACAAGCAAAAAGTTTGGGGATGGATTGAATCCCAGGTTACCAGCTATGCAAGATTGGTTGACCCCTGAACATTTTTCAAGATGTGATCATTCCAATAGAACAGGATAATTAATAAGCCCTACATTTAGATCATTTGGACTTGTGTCTTATCTCTTAAGAGATGTTTCACTTTTTTGAAGTATATTAATTACTAATCATGTAAGACTGATCTCTATCCCCCTTGCATGTTTGATAGTTGTAACCCGTTTGGTCATTAATGATGTTAGCATATTTGGATGGAAAAAGTAGCCAACTACCTGTTAAAATGAAGGTGGAAAACGCTAATGAGCATCATATTTACTGTATTATATCCATAATCAGGATAATAAATATTTACTTTTAGCCCT

Ace file of the UniGene sp_v3.0_unigene7461

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Zinc finger protein, putative	-	-	7.819e-09	-

Source	Gene names
Sma3	AT4g24970; AT4g36270; AT4g36280; AT4g36290; At1g19100; At4g36280; At4g36290; At5g13130; At5g50780; B1156H12.4-1; C7A10.1020; F13M23.110; F23E13.160; F23E13.170; F23E13.180; GSVIVT00016039001; GSVIVT00017982001; GSVIVT00020694001; GSVIVT00036855001; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36280.1	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein chr4:17165513-17169277 REVERSE LENGTH=626	60%
RefSeq	Arabidopsis thaliana	NP_195351.2	histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002327779.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A973

Fln msg: your sequence is longer than subject: 646 - 290

Fln protein: MDPDCMRQCMSLGYSVKTNSTTIGQYGNGFKTSTMRLGADVIVFSRSGRGSPPTQSIGLLSYTFLRRTGQDDTIVPMVDFVLSQDLRKATMLIRSTKDDWLKNLTTILQWSPYKTEDELMNQFEDIGPHGTKIVIYNLWLNDDGVLELDFDKDKEDIRLREIGKIEKPMPSQKALLQSSISYRLRYSLRVYASILYLKKLPNFSIILRGNRVEHHYIADDLKFPKVVIYKPQLGIVSKEVSVATTIGFAPEAPSINIQGFNVYHKNRLIMPFWKIWPSNTDSRGRGVVGVLEANFIEPAHDKQDFERTAILLRLEARLKQMTADYWRLHCGLIGYQAKSSTDGQRNSLPSTVVEKPYSASVVPRCSISQNIVSHNLAASKSLPNHGQIAGPVLADLGDHNQQLRQETSRDHCGKLHVPNLGVTLESKELLSVQSHAITSSILVEEKPDLTLLSATETSRFTAQPSKMSLDKVVSVSNGNPLLDPGLDILRKGDEEKRGNFDQELDNPSNADDNSSLDTSKRKASSVMLCNSEDLKRHRNCEGILMSGTLHEQIADVWNQLKRSRCTGNKYSQATVFLPGKFVEKVTDHNIQLFMRCEQHRHNETQLHQVIARLENELMMARRKFAQLRSSVELQNKKQAKSLGMD*

Protein Length: 647

Fln nts: ATGGAGGTGGA_-_ATGGATCCTGATTGTATGCGGCAATGTATGAGCTTGGGTTACTCAGTGAAAACTAATAGCACAACTATAGGACAATATGGCAATGGATTCAAAACCAGTACCATGAGATTAGGTGCAGATGTGATTGTTTTCAGTCGCTCTGGTCGTGGCAGCCCTCCCACACAGAGTATTGGGCTTCTTTCTTACACATTTTTGAGGAGAACAGGGCAAGATGACACCATTGTGCCAATGGTTGATTTTGTTCTTTCACAAGATTTGAGAAAAGCAACAATGTTAATTCGTAGCACAAAGGATGATTGGTTGAAAAACTTAACCACAATCCTCCAATGGTCTCCTTATAAAACAGAAGATGAACTTATGAATCAGTTTGAAGACATTGGACCTCATGGAACAAAAATTGTAATTTACAACCTTTGGCTTAATGACGATGGTGTCCTTGAACTTGACTTTGACAAAGACAAGGAGGATATACGCCTTCGAGAAATAGGCAAAATAGAAAAACCCATGCCATCACAAAAAGCATTGCTTCAATCCAGCATTTCATATCGCCTACGTTATTCATTACGTGTCTATGCTTCTATTCTTTATCTAAAAAAACTACCAAATTTCAGTATTATTTTAAGGGGAAACCGTGTTGAGCATCACTACATTGCTGATGATCTGAAGTTTCCTAAAGTAGTCATCTACAAGCCACAACTTGGGATTGTTTCTAAGGAGGTGTCTGTGGCAACAACTATAGGATTTGCACCAGAAGCACCTTCTATTAATATTCAAGGATTCAACGTGTATCACAAAAATCGCTTGATCATGCCCTTTTGGAAAATCTGGCCAAGTAATACAGATAGCAGAGGAAGGGGTGTTGTAGGTGTTCTTGAAGCAAACTTTATAGAGCCTGCACATGACAAACAGGATTTTGAAAGAACAGCTATACTACTTCGGTTAGAAGCGAGACTTAAACAAATGACTGCTGACTACTGGAGACTGCATTGTGGATTAATAGGTTATCAAGCAAAATCTTCCACTGATGGTCAACGCAATTCTTTGCCTTCTACCGTAGTTGAGAAACCTTATTCAGCAAGTGTTGTTCCAAGATGCTCAATTTCCCAGAATATTGTTTCTCATAATTTGGCTGCTTCAAAATCTCTTCCCAATCATGGGCAAATAGCAGGACCTGTTCTGGCAGACCTTGGTGACCATAATCAACAGCTCCGTCAAGAAACCAGCAGAGATCATTGTGGAAAGTTGCATGTTCCCAACCTAGGGGTGACATTAGAATCCAAGGAACTATTGAGTGTACAATCTCATGCAATAACCAGCTCTATTCTTGTTGAGGAAAAACCAGATTTAACACTGCTATCTGCTACGGAAACTAGCAGATTTACTGCACAACCTAGCAAGATGAGCCTGGATAAAGTTGTTTCTGTTTCTAATGGCAATCCTCTACTAGATCCTGGATTAGACATTCTTCGAAAGGGTGATGAGGAAAAGAGAGGTAATTTTGATCAAGAACTGGATAATCCAAGCAATGCTGATGATAACTCTTCTTTGGATACATCTAAGAGGAAAGCATCATCTGTGATGCTCTGTAATTCCGAAGACCTTAAGAGACACAGGAATTGTGAAGGAATTCTCATGTCTGGAACGCTGCATGAACAGATTGCTGACGTATGGAATCAACTAAAGAGATCTAGGTGTACAGGGAATAAATATTCGCAAGCAACGGTTTTTCTGCCTGGCAAATTTGTTGAGAAGGTTACTGATCATAATATACAATTATTCATGAGATGTGAACAACACAGACATAACGAAACTCAGTTACACCAAGTGATAGCAAGGCTAGAGAATGAGTTGATGATGGCAAGAAGGAAGTTTGCACAACTGAGATCTTCTGTGGAACTCCAGAATAAAAAACAAGCAAAAAGTTTGGGGATGGATTGA___ATCCCAGGTTACCAGCTATGCAAGATTGGTTGACCCCTGAACATTTTTCAAGATGTGATCATTCCAATAGAACAGGATAATTAATAAGCCCTACATTTAGATCATTTGGACTTGTGTCTTATCTCTTAAGAGATGTTTCACTTTTTTGAAGTATATTAATTACTAATCATGTAAGACTGATCTCTATCCCCCTTGCATGTTTGATAGTTGTAACCCGTTTGGTCATTAATGATGTTAGCATATTTGGATGGAAAAAGTAGCCAACTACCTGTTAAAATGAAGGTGGAAAACGCTAATGAGCATCATATTTACTGTATTATATCCATAATCAGGATAATAAATATTTACTTTTAGCCCT

Fln Alignment:

Contig7461___MTADYWRLHCGLIGYQAKSSTDGQRNSLPSTVVEKPYSASVVPRCSISQNIVSHNLAASKSLPNHGQIAGPVLADLGDHNQQLRQETSRDHCGKLHVPNLGVTLESKELLSVQSHAITSSILVEEKPDLTLLSATETSRFTAQPSKMSLDKVVSVSNGNPLLDPGLDILRKGDEEKRGNFDQELDNPSNADDN-SSLDTSKRKASSVMLCNSEDLKRHRNCEGILMSGTLHEQIADVWNQLKRSRCTGNKYSQATVFLPGKFVEKVTDHNIQLFMRCEQHRHNETQLHQVIARLENELMMARRKFAQLRSSVELQNKKQAKSLGM
D5A973______________MTADYWRLHCELIGYQAKSSTDGPHISLPSPLVEKPCSASAVPRCSIYQNFVSHNLPISKSLPSHGQIAGPVMADLGCHNQQLHQETSRDRCGKLNVSNLGETPESKEVLSVQSHAITNSILVEEKPDLTLLSAMAVSGFTAQPREMGLDKGV------------------------------------ADDNCSSMDTSKRKAPPVMLCNADDLKRHRNCEGVLMSGTLHEQIDAVWNQLKASKCTGNKYSQATVFLPGKFVEKVTDYNIQLFMRCEQYRHSKTQLHQVITRLENELTMARKKFAQLRSSVELQNKKQAESLRM

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
308		11		88	0.923564
424	11			88	0.923564
499	14		85		0.993533
500		85	14		0.993533
1239			66	33	0.997452
1240	66		33		0.997452
1241			33	66	0.997452
1242		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain