SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7458

Length: 1201 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7458 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	4.0e-17	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABU5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 173 aas, putative chimeric sequence, your sequence is shorter than subject: 175 - 425

Fln protein: LWTPIKELPASVTTLVNLEILDLSFSSIKELPADFHKLRSLRYLGLSHCKDLQYLPRGISQLTSLQYLYMDECDSLWKSTESRRKWKQVASISDLVGLTQVKWLEVQNNGAAFHENIDEKSAGKIVPLETLRLTLTGMKTLPIIMTQMQKLKRLALKCPDLDRMEFIGIRQQKI*

Protein Length: 176

Fln nts: TCTGTGGACACCCATCAAAGAATTGCCAGCATCTGTTACAACTCTGGTAAACCTAGAGATCCTTGACCTTAGCTTTTCTAGCATCAAAGAATTACCAGCTGACTTTCATAAGTTGAGATCTTTAAGGTATTTAGGGCTTAGCCACTGTAAAGACTTACAGTATCTGCCTCGGGGCATCTCGCAGCTTACTTCTTTGCAGTACTTATATATGGATGAATGTGACAGTCTCTGGAAAAGCACTGAATCACGGCGCAAGTGGAAACAGGTGGCTAGTATTTCAGATCTGGTGGGATTAACTCAAGTCAAATGGTTAGAAGTACAGAACAACGGGGCAGCTTTTCATGAGAATATTGATGAGAAATCAGCAGGGAAGATAGTCCCATTGGAGACCCTCCGTTTGACACTCACAGGGATGAAAACTCTACCGATTATCATGACTCAGATGCAAAAACTAAAGAGACTTGCTTTGAAATGCCCTGATTTGGATAGAATGGAGTTCATTGGCATTCGACAACAAAAAATTTGA___TGACTTCCAAAACCTGAGTTATCTTATATTGTTCGACTGTGGTATGTTGTGGAAACTTCCCGATTTGCATAACCTTAAGAATTTACAGAGACTAGAGATCATCGCATGCCGTAAGTTAAAGGAGTTTCCAGAGGAATTTGCTAAAAAAGGGGCATTTCCTTCCTTGAAGATCTTTTCACTTATCAGATTAGAAAAATTGGAAAAGCTGCCAATAACAGGGAGAGAAGAAACAGAGAGAGATATAGAGGAGGGAGCAATGCCTGCACTTCAAATATTCACTATAATGGAATGTCCAGCATTAAAGATTTTGCCACCGGGTTATCTACAAATAAGAACTCTTCAAAAACTAAGGATTTATAGTTGTCCAATGATAGCTGAAGACTACTGTAGAAGGAATGAAACACAGAGAAATGGAATGGTGAAATTAATGTCTATAAGAGATACAGAGGAAATTAAGAAGTGGCACTTCCAGTTATGTGCTAAGCATGGAAGTTGGATATATGGCGAATTTTGGTGTCAGGAGCTTTTCCTCTTTCTAGGAGGTCTTAATGCATTTGTATAGTTTATTAATTCATCCAAGTTTTTATACATCCTTCATTTAATAAGTGACCATTCCAATTATGTACTAAACTTTCAATATATGGATTTTGATGTAATGAGTTTTTCTCTTTTCAA

Fln Alignment:

Contig7458___PIKELPASVTTLVNLEILDLSF-SSIKELPADFHKLRSLRYLGLSHCKDLQYLPRGISQLTSLQYLYMDECDSLWKSTESRRK-----------WKQVASISDLVGLTQVKWLEVQNNGAAFHENIDEKSAGKIVPLETLRLTLTGMKTLPIIMTQMQKLKRLALK
D5ABU5______________PIKKLPDSITRLKKLQILDLSHCGQLSELPYGLYKMTGLLYLDLSFCPGLNCIPCGISMLTSLQYLKMEKCWKAWQPTPQPRKTLCDLTGGRAEYKRAARFNDLHSLKHLKWLALEE----FRQPFTEGIVGNMVEMRTLILRMQQMEVLPEDMKSMVELGTLVVQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
793		20		80	0.995493
913		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain