SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7454

Length: 2259 nt

UniGene Fasta

>sp_v3.0_unigene7454
ATGGGGCCACTTGGCATTCTGTCTGATGGTCTAGTGTCCACGTGCCGGGTATCGGGCGGAGGTGAGGACAGCGGATCGGTCTCACCGCCACTATGTCGCACCTAACCTACCCAGCCCGCGCGGGCAGTTCCTCGCCTCCCCTGCCCGTGCCCGTTGGGGAGTATAGCAGCGACGGGACCCTGCCTGCCATTGAGGCGCTGTTATTGCGAGGCGTGGGACATTTAAAGGTCCTGGGTTCGACACCCCCGGGGATGTTTGTGTACAGGTTTCTGATGTGCTGCGAGTCTGTACGTGAGGACAGGGAGACTGTAGGAGAGGGAGTAGATTTGTGCCTTTTGGCGTGACAGCGGTTGACAGGGATTTTTCATTTTGAGGCCGTTTTTGTTGAATTGGCAGTCTAGGGTTTGAAAGCGCAGTTTCTGAGCTTGAAGGGATTCTTCTTTGTTGTCTGCCGGGGAAGAACATTTTGTGGAGTCCGGTATATATTGAGGTTGTCTGGCATGGAAGGCTTAGAGATCTGCAGGAGCCCGTGTAGCATAGCGGAGAAGAATCCGCTGCCATGCGAGCCCAAGTCCCGCGCGGCAAGGCGAAGGCGCATGGAGATCCGGAAATTTAAGGTTATCGCAACGTCTCCCATCGTGAAGCCCACTGAAACGTCACGGAAAAGACTTAAAATTACCATTTTGGGCCGTGATTTTGCCAGGGACTGCGTGAACGCCATCGAGAGCTCAATGTCCGGGGCAGGAGTCGAGCTGGATCCAGTCACAAACGATGCCTCGACGTCTGGAAATGAGGAAAAGGCAGGTCTTTCGGCTTTTCCGTTAACGAGCGAAGCGAAGCTGCAGGAAACTGGATCGGCAGGACTCAAAGAAAAGGCCGCTGACAGAACCGATGGTTGCAGTGTAGGTGTTGATAATATTTGTCCAGAACATGCCTTTGTGTCGGTATGCGGAAGGCGAAGAGAAATGGAGGACGCGGTTTCGATTCTCCCGGCTTTTAATTGCACAAAAAATGAAAGCAATACGAAGAGCGATCCGGCGCTGCACTTTTTTGGCGTCTACGATGGCCATGGCGGATCGCAGGCGGCCTTGTTCTGTAAAGAACGCCTCCACGAGGTTCTCGCGGAGGAGTTGAAGATTTTCGGCGGCAACGCGCAGGACGAGACGCAATGGCAGCAGCTCACGAGCGCTTGTTTTGGGAGAGTGGACGCCGAGATCTTATCCGGCGGTATTGTGTGCAGAAATGACTGCATAACCCGCGAAGGGAATAATGAGTGTTCTTGCGGGCAGAGAATAACATCTGAGGCTGTGGGAACTACTGCAGTGGTGGCTATTGTTGGATCTAGCCAAATCGTCGTCGCTAACTGTGGCGATTCGCGGGCCATATTGTCGCGAGGCGGAAGGCCCGTCGTTTTATCACAAGATCACAAGCCAGATCGGCCGGATGAAATGGAGCGCATAGAGGCAGCTGGCGGGCGCGTATTTTTTTGGAACGGCCCTCGCGTTCTTGGCGTCCTGGCCATGTCCAGGGCTATAGGCGACAAATACCTAAAGCCCTATGTCATCGCCAAGCCAGAGGTGACAATCAATGCCCGAAGCGACGAAGACGAATTCTTAATTCTGGCAAGCGACGGGCTCTGGGACGTGCTCTCCAACGAAGTCGTGTGCGAGGTTGCCAGGAGATGTCTGTCGGGTCGATCACACAGAAGCTACGGCGGTCTTCAGGCAGAGGGCCGAGATGACAGTCCCGCGGCTATCGCTGCAGCGTTGCTGACAAAGCTGGCGATTGCTCGAGGTAGCCAAGACAATATTACCGTAGTTGTCGTGGATTTACAGAGACGCCGACGCCATCAGAGCAGATGACTATTCATTCCTTATTATGTATTTCTTGGTACGATATTTTTTTATCACAGCATCTTTATTGGTGTTAGTATTATTATGTATGAAGATCTGGCAAATTTCTGGTTTTCAAATACAAATTTAAATGTACAAACTGTTAACAGCTGTATTCCATTCTCCTTTTTCTTAAACATGATTCGAAAGCAATTTTGACAATTGCATGGAACGGGATTCGAAGCCCGCTCCACCTTCCATGTCTGACATATTTTCAATTCCATAACAAGCTGTTTAGATCAGTCTGCACGATACCGTGAAGATTCTTTTTTTTCAGCTTTTCCTCTCGTTGGTACTATAAAAGGACACGTGTATAATTGATATGGTTAAAAGGACACGTGTATATTATACTTAATCGTGTAATTCA

Ace file of the UniGene sp_v3.0_unigene7454

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphtase 2C n=1 Tax=Marchantia polymorpha RepID=D3W6X9_MARPO	-	-	0.0	48%
FL-Next	sp=Probable protein phosphatase 2C 8; Oryza sativa subsp. japonica (Rice).	-	-	0.0	51%
Sma3	Protein phosphatase 2C	-	-	3.483e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.12104e-44	-

Source	Gene names
Sma3	ABI1; ABI2; AHG1; AHG3; AIP1; AT1G72770; At1g07430; At1g17550; At1g72770; At2g29380; At3g11410; At4g26080; At5g51760; At5g57050; At5g59220; CHLREDRAFT_121320; F16P2.24; F1L3.32; F20B18.190; F22G5.22; F24K9.8; F28P22.4; GSVIVT00006514001; GSVIVT00006760001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	potassium channel activity	GO:0005267	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	photoinhibition	GO:0010205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G29380.1	HAI3 highly ABA-induced PP2C gene 3 chr2:12608855-12610124 FORWARD LENGTH=362	52%
RefSeq	Arabidopsis thaliana	NP_180499.1	putative protein phosphatase 2C 24 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002299846.1	predicted protein, partial [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q5SN75

Fln msg: your sequence is longer than subject: 454 - 403

Fln protein: MEGLEICRSPCSIAEKNPLPCEPKSRAARRRRMEIRKFKVIATSPIVKPTETSRKRLKITILGRDFARDCVNAIESSMSGAGVELDPVTNDASTSGNEEKAGLSAFPLTSEAKLQETGSAGLKEKAADRTDGCSVGVDNICPEHAFVSVCGRRREMEDAVSILPAFNCTKNESNTKSDPALHFFGVYDGHGGSQAALFCKERLHEVLAEELKIFGGNAQDETQWQQLTSACFGRVDAEILSGGIVCRNDCITREGNNECSCGQRITSEAVGTTAVVAIVGSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGGRVFFWNGPRVLGVLAMSRAIGDKYLKPYVIAKPEVTINARSDEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSYGGLQAEGRDDSPAAIAAALLTKLAIARGSQDNITVVVVDLQRRRRHQSR*

Protein Length: 455

Fln nts: ATGGGGCCACTTGGCATTCTGTCTGATGGTCTAGTGTCCACGTGCCGGGTATCGGGCGGAGGTGAGGACAGCGGATCGGTCTCACCGCCACTATGTCGCACCTAACCTACCCAGCCCGCGCGGGCAGTTCCTCGCCTCCCCTGCCCGTGCCCGTTGGGGAGTATAGCAGCGACGGGACCCTGCCTGCCATTGAGGCGCTGTTATTGCGAGGCGTGGGACATTTAAAGGTCCTGGGTTCGACACCCCCGGGGATGTTTGTGTACAGGTTTCTGATGTGCTGCGAGTCTGTACGTGAGGACAGGGAGACTGTAGGAGAGGGAGTAGATTTGTGCCTTTTGGCGTGACAGCGGTTGACAGGGATTTTTCATTTTGAGGCCGTTTTTGTTGAATTGGCAGTCTAGGGTTTGAAAGCGCAGTTTCTGAGCTTGAAGGGATTCTTCTTTGTTGTCTGCCGGGGAAGAACATTTTGTGGAGTCCGGTATATATTGAGGTTGTCTGGC_-_ATGGAAGGCTTAGAGATCTGCAGGAGCCCGTGTAGCATAGCGGAGAAGAATCCGCTGCCATGCGAGCCCAAGTCCCGCGCGGCAAGGCGAAGGCGCATGGAGATCCGGAAATTTAAGGTTATCGCAACGTCTCCCATCGTGAAGCCCACTGAAACGTCACGGAAAAGACTTAAAATTACCATTTTGGGCCGTGATTTTGCCAGGGACTGCGTGAACGCCATCGAGAGCTCAATGTCCGGGGCAGGAGTCGAGCTGGATCCAGTCACAAACGATGCCTCGACGTCTGGAAATGAGGAAAAGGCAGGTCTTTCGGCTTTTCCGTTAACGAGCGAAGCGAAGCTGCAGGAAACTGGATCGGCAGGACTCAAAGAAAAGGCCGCTGACAGAACCGATGGTTGCAGTGTAGGTGTTGATAATATTTGTCCAGAACATGCCTTTGTGTCGGTATGCGGAAGGCGAAGAGAAATGGAGGACGCGGTTTCGATTCTCCCGGCTTTTAATTGCACAAAAAATGAAAGCAATACGAAGAGCGATCCGGCGCTGCACTTTTTTGGCGTCTACGATGGCCATGGCGGATCGCAGGCGGCCTTGTTCTGTAAAGAACGCCTCCACGAGGTTCTCGCGGAGGAGTTGAAGATTTTCGGCGGCAACGCGCAGGACGAGACGCAATGGCAGCAGCTCACGAGCGCTTGTTTTGGGAGAGTGGACGCCGAGATCTTATCCGGCGGTATTGTGTGCAGAAATGACTGCATAACCCGCGAAGGGAATAATGAGTGTTCTTGCGGGCAGAGAATAACATCTGAGGCTGTGGGAACTACTGCAGTGGTGGCTATTGTTGGATCTAGCCAAATCGTCGTCGCTAACTGTGGCGATTCGCGGGCCATATTGTCGCGAGGCGGAAGGCCCGTCGTTTTATCACAAGATCACAAGCCAGATCGGCCGGATGAAATGGAGCGCATAGAGGCAGCTGGCGGGCGCGTATTTTTTTGGAACGGCCCTCGCGTTCTTGGCGTCCTGGCCATGTCCAGGGCTATAGGCGACAAATACCTAAAGCCCTATGTCATCGCCAAGCCAGAGGTGACAATCAATGCCCGAAGCGACGAAGACGAATTCTTAATTCTGGCAAGCGACGGGCTCTGGGACGTGCTCTCCAACGAAGTCGTGTGCGAGGTTGCCAGGAGATGTCTGTCGGGTCGATCACACAGAAGCTACGGCGGTCTTCAGGCAGAGGGCCGAGATGACAGTCCCGCGGCTATCGCTGCAGCGTTGCTGACAAAGCTGGCGATTGCTCGAGGTAGCCAAGACAATATTACCGTAGTTGTCGTGGATTTACAGAGACGCCGACGCCATCAGAGCAGATGA___CTATTCATTCCTTATTATGTATTTCTTGGTACGATATTTTTTTATCACAGCATCTTTATTGGTGTTAGTATTATTATGTATGAAGATCTGGCAAATTTCTGGTTTTCAAATACAAATTTAAATGTACAAACTGTTAACAGCTGTATTCCATTCTCCTTTTTCTTAAACATGATTCGAAAGCAATTTTGACAATTGCATGGAACGGGATTCGAAGCCCGCTCCACCTTCCATGTCTGACATATTTTCAATTCCATAACAAGCTGTTTAGATCAGTCTGCACGATACCGTGAAGATTCTTTTTTTTCAGCTTTTCCTCTCGTTGGTACTATAAAAGGACACGTGTATAATTGATATGGTTAAAAGGACACGTGTATATTATACTTAATCGTGTAATTCA

Fln Alignment:

Contig7454___CPEHAFVSVCGRRREMEDAVSILPAFNCTKNESNTKSDPALH---------FFGVYDGHGGSQAALFCKERLHEVLAEELKIF------GGNA----QDETQWQQLTSACFGRVDAEILSGGIVCRNDCITREGNNECSCGQRITSEXXXXXXXXXXXXSSQIVVANCGDSRAILSRGGRPVVLSQDHKPDRPDEMERIEAAGGRVFFWNGPRVLGVLAMSRAIGDKYLKPYVIAKPEVTINARSDEDEFLILASDGLWDVLSNEVVCEVARRCLSGRSHRSYGGLQAEGRDDSPXXXXXXXXXXXXXXRGSQDNITVVVVDL
Q5SN75______________CVSHGAVSVIGRRREMEDAIFVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEV--------------GGAEEADTGEQTVGSTAVVAVVGPR----RIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIARNCLSGRAASKY----PESVSGSTAADAAALLVELAISRGSKDNISVVVVEL

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
679		87		12	0.992554
689		85	14		0.993533
717	14		85		0.993533
725	12		87		0.992554
727			87	12	0.992554
728		87	12		0.992554
763		11		88	0.923564
921		12		87	0.992554
922	12		87		0.992554
924		87		12	0.992554
960	87		12		0.992554
962	87		12		0.992554
968	12		87		0.992554
969		12	87		0.992554
971			87	12	0.992554
972			87	12	0.992554
976	14	85			0.993533
977		14	85		0.993533
978	14		85		0.993533
983	33		66		1.0
1162	50		50		1.0
1259		88		11	0.923564
1405		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain