SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7450

Length: 1330 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7450

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Squamosa promoter-binding-like protein 15 sp\|A2YX04.1\|SPL15_ORYSI RecName: Full=Squamosa promoter-binding-like protein 15 dbj\|BAD10073.1\| putative SPL1-Related2 protein [Oryza sativa Japonica Group] gb\|EAZ07615.1\| hypothetical protein OsI_29	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	GSVIVT00002959001; OsI_028847; POPTRDRAFT_560022; POPTRDRAFT_731598; POPTRDRAFT_798319; RCOM_1602440; SPL15;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ankyrin repeat	IPR002110	-	0.0	-
Sma3	Transcription factor, SBP-box	IPR004333	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 182 aas, your sequence is shorter than subject: 156 - 997

Fln protein: QKLFPLHSKDKNKEIDSVSVSEEDELTTDQSPKNDGLCKFGLSNSGRMNDLHNIPLSSPPGCSDLKINGYTSSSSDQSPSSSNSDTKERTSRIIFKLFGKDPSDFPQTLRSEILEWLSRCPSDMESYIRPGCVILTIFASMPMNAWEQACAMRFV*

Protein Length: 157

Fln nts: ACAGAAACTTTTCCCTTTGCATTCCAAAGATAAAAACAAAGAGATTGATAGTGTCTCAGTTTCGGAGGAAGATGAATTAACAACAGATCAAAGTCCTAAAAATGATGGATTGTGCAAATTCGGTCTCTCAAATAGTGGAAGGATGAATGACCTGCACAACATCCCCTTAAGTTCTCCACCTGGCTGTTCGGATCTTAAGATTAATGGGTATACTTCTTCAAGTTCAGATCAGTCCCCATCAAGTTCGAATTCAGATACAAAGGAACGCACAAGCAGAATTATTTTCAAACTTTTTGGAAAAGATCCGAGCGATTTTCCCCAAACGCTGAGGTCCGAGATTCTTGAATGGTTGTCTCGCTGCCCATCAGACATGGAGAGCTACATAAGGCCTGGCTGTGTTATTCTCACGATATTTGCATCCATGCCAATGAATGCATGGGAACAGGCATGTGCGATGAGATTTGTTTGAATGATGAAAGTACTGTTTTTTAAGGATAGTCGTAACAGTTTTTGGAGGAATGGTCGTATGATAGTTCAAGCTGAACAACAATTAGCTTTATTTAGAGATGGTAAGATTAGGTTTTGCAGGGCTTCTAGTTCGTTGGATGCCCCAGAATATGTTCAGTCTGGCCTATTGCAGTTGTAGCAGGTGAAGAAACTAGACTTGTTCTCAAAGGCCACAATTTGACAACTCCTGGCACAAAAATTCTATGTGCTTACAGGGGAAAGTGCATCTCACAAAATGTTCCCGAGGATTATCAAGCAGGCTGTTGTACTCTCCTCTCGAATGCCACTACCATTGAACACAAATTCCCAGGGGGGCCGGCTAATGTCTTCGGTCGTATTTTCATGGAGGTTGAGCGAGGTTTGAAAGGCAACAACTTTCCAGTTATTGTGGCAGACAGTGCGATATGTAGAGAGCTACTTACCCTAGAAGATGACTTTGAAGGATTCCGTGAGGGAAAAGTAACAAATCGGCATTCAAAACCACATTCTCGAGATGATGTCGTATTTGGTATCCAAGAAGACATCGTCACTTTTCTAAATGAGTTGGGATGGCTTTTCCAAAGAAATTCTTACTTTAAGGACGGTCTTTTTTCTCCAAAATGTTCACCTGCCCGTTTCACGTTTCTTTTGATTTTTTCTGTGGAAAGGGATTGGAATTCTCTACTGCAGAAGGTTCTGGATATACTTTTTAGAATGTATGGTGAAGAAGAAGAATCAGTTCCAGAGGCATTCAATATCTTGTCAGAAATTAATTTGCTGCACAGGGCAGTGAAGAGAAATTGTAGACAAGTAATTATAGAAACATTGCATTCAGACCAGATGT

Fln Alignment:

Contig7450___TSRIIFKLFGKDPSDFPQTLRSEILEWLSRCPSDMESYIRPGCVILTIFASMPMNAWEQACA
B8LQP1______________TGRISFKLYDWNPAEFPRRLRQQILQWLADMPIELEGYIRPGCTILTAFIALPQFMWEKLFA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
906	88		11		0.923564
979	85	14			0.993533
982		85		14	0.993533
1091	80	20			0.995493
1099		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1210	1221	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain