SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7441

Length: 2596 nt

UniGene Fasta

>sp_v3.0_unigene7441
GTCTATGGGGAGAGGAACGAGAGCAGAAGAGACAGGCGGCCTGGGTTGAGCTGAAATTGTAGCTTTGGAAGAGAATTAGGTGTGGAGGCTCTGGGATTCGATCCGAGGTCGGAGGTCGCTTGAATCAAAGACCCCAAAACATATCAGATGGAGCAGAAGAACGTATTGATGTCGGCCCTCAGCGTGGGGCTCGGAATCGGCCTGGGTGTCGGACTCGCCACAGGCCGTTCGCAGACCTTTCAGAAATGGACGTCTCCCTGTTCTTCTGTCAATTACCAGGAAATAATGGAACTCGAGCTCAACAATCGCCTCCTTGACGGGAAATCTTGTAGTGTTACCTTCGAAGAATTCCCTTATTCCCTCAGTGAGCAGACGAAGGCTTTGTTGACGAGCGGGGCTTTTGTTTATTTGAAAGAAGAGCAGTTTTCTAAGTACACTCGAAATCTCTCGCCTGCGAGTCGAGCCATTTTGCTCTTGGGCCATGCAGAGCCCTACCACCAAATGCTTGCCAAGGCATTGGCACATTACTTTGATGCTAAATTGCTTTTGCTGGATGCTACTGACTTTTGCTTGAAGTTGCAAAGCAAACATGGAGGAGGCACTGATTCTCAGGATTTAAAGTCCTTTTCTGAAGCTGCATTAGAGCGCATTGGTAGCCTGTTTGAATCCTTCACCCTGCCTACAGGTGCAGAGCAAAGAAATTGCAAATCAGCAGGCAGTCTTTGGCGATCAAACAGTGGCATTGAACCAAAGCTGACGTCCTCTGAAGGAACAAGTAACCTTCAAAGTTGTAGGAGTAACTCGGCATCAGAACCTGATTTCTCCAGATATGGGTCATCTGTGATGAACACCACAAATCAAGCTTCATTAAAACGTGCAAATTCTTGGTCATTTGACGACAAATTACTTGTGCGATCGCTTTATAAGGTCTTGGTTTCTGTCTCAAAGACTAGTCCTGTGATTTTGTATTTGCGGGATATTGAGAGACTTGTATTCAGAGGGCCAAAGACCTATCAAATGTTTTTTAATATGATAAAACAACTCTCTGGGCCCATTTTAATACTAGGTTCCAGAATCTTGGGCTCACAAGAGAAGCCATGCTATGGAGATACTGAGAAAAAGTTGTCAGATTTATTTCCCTATACCATTGACACAAAACCCCCAGAGGATAATACAGAACATGGGGCCTGGAAGAGCAAGCTTGAAGAGGACATGAAAGCAATCGAGTTTCAAGACAACAGGAACCATGTATCAGAGATACTTGCAGCAAATGATGTTGAATGTGATGATTTGGGAAGCATTTCTTTTGGTGATACAATCCTTCTTAGTAATTATATTGAGGAAATTGTGGTCTCTGCGATTTCTCATCACCTCATGAACACAGAGCAGCCCGATTATCGTGGTGGACGTCTTATTATCTCTTCCAAAAGCTTGGCACATGGATTGAGCATATTCCAAGCAGGACAGATTGATAGCAAGGACACACTCCAAATGGAATCCAATGGAGAAAACCCACAGGATCCAACAAGTGGAAAGATTGAAGCAAAAATGGAGTCTCCTTCTACAGAAAAAAAACCTGAAGGGGAAAAAACAGATTCTGCTTCAAAGGGGGATATGCCTAAGAAAGAAGCAGATAACACTAAAGAAGGGGGTCCTGCAGTAACTCCGAAACCGGAAGTTCTTCCAGACAATGATTTTGAAAAGAGGATCAGACCGGAAGTCATTCCTGCAGGTAAAATTGGTGTTACATTTGATGACATTGGTGCACTGGAAAATGTTAAAGAATCACTGCAGGAACTTGTAATGCTACCTCTTCGACGGCCAGACTTGTTTAAGGGGGGTCTCCTTAAGCCATGCAAAGGCATTCTACTTTTTGGACCCCCTGGAACAGGGAAAACAATGCTAGCAAAGGCCCTTGCCACTGAGGCCAATGCCAGCTTTATAAATGTCTCAATGTCTACCATAACTTCAAAGTGGTTTGGAGAAGATGAGAAGAATGTAAGGGCATTGTTCTCTTTGGCTGCAAAAGTTTCCCCTACGATTATTTTCATTGATGAGGTTGACAGCATGTTAGGCCAAAGGTCTAGAGTTGGTGAACACGAGGCAATGAGGAAAATAAAGAACGAGTTTATGGCTCACTGGGATGGTTTGCTATCAAAGACTGCAGAGCGTGTTCTTGTTCTCGCTGCAACTAACAGACCTTTCGATTTGGATGAAGCTATAATCAGACGGTTTCAGCGAAGAATCATGGTTGGACTGCCAAATGCTGAGAGTAGAGAAAGAATTCTAAGGACACTCCTTGCAAAAGAGAAACTTGAGGAAGGCTTTGATTTCAAGGAGCTCGCAACAATGACAGATGGTTATACTGGCAGTGACCTCAAGAATCTATGTACAGCCGCAGCTTTTCGGCCAGTTCGGGATTTTCTGAAGACAGAGCAACAGAAAGAAAAGGCTAAGAAGAAAGAAGAGGAGAAGAAAGAAGAAGAGAAAAAGGAAGAGGCAACGAAAGAAGAGGAGAAAAAAGAAGACATAGGGGAGTCAGAGAACTCTGAACAATCTAGCAAGGAAGAGGAGAAGAAAGAAGAGAAGAAAGAAG

Ace file of the UniGene sp_v3.0_unigene7441

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein n=6 Tax=Arabidopsis RepID=F4I5A3_ARATH	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Chromosome undetermined scaffold_91, whole genome shotgun sequence	-	-	9.171e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	3.164e-21	-

Source	Gene names
Sma3	AT1G64110; AT4g02470; AT4g24850; AT4g27680; AT4g28000; At1g64110; At1g64110/F22C12.12; At2g27600; At3g27130; At4g24850; At4g27680; At4g28000; At5g52882; At5g53540; B1103G11.33; CDC48; CHLREDRAFT_113573; CHLREDRAFT_116557; CHLREDRAFT_98650; F19K23.7; F22D1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	thiamine diphosphokinase activity	GO:0004788	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	mismatch repair	GO:0006298	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	thiamine metabolic process	GO:0006772	Biological Process	-
Sma3	endosome organization	GO:0007032	Biological Process	-
Sma3	thiamine diphosphate biosynthetic process	GO:0009229	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64110.2	-	62%
RefSeq	Arabidopsis thaliana	NP_001117544.1	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002318353.1	predicted protein, partial [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE60

Fln msg: Distance to subject end: 25 aas, your sequence is longer than subject: 816 - 388

Fln protein: MEQKNVLMSALSVGLGIGLGVGLATGRSQTFQKWTSPCSSVNYQEIMELELNNRLLDGKSCSVTFEEFPYSLSEQTKALLTSGAFVYLKEEQFSKYTRNLSPASRAILLLGHAEPYHQMLAKALAHYFDAKLLLLDATDFCLKLQSKHGGGTDSQDLKSFSEAALERIGSLFESFTLPTGAEQRNCKSAGSLWRSNSGIEPKLTSSEGTSNLQSCRSNSASEPDFSRYGSSVMNTTNQASLKRANSWSFDDKLLVRSLYKVLVSVSKTSPVILYLRDIERLVFRGPKTYQMFFNMIKQLSGPILILGSRILGSQEKPCYGDTEKKLSDLFPYTIDTKPPEDNTEHGAWKSKLEEDMKAIEFQDNRNHVSEILAANDVECDDLGSISFGDTILLSNYIEEIVVSAISHHLMNTEQPDYRGGRLIISSKSLAHGLSIFQAGQIDSKDTLQMESNGENPQDPTSGKIEAKMESPSTEKKPEGEKTDSASKGDMPKKEADNTKEGGPAVTPKPEVLPDNDFEKRIRPEVIPAGKIGVTFDDIGALENVKESLQELVMLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGLLSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFDFKELATMTDGYTGSDLKNLCTAAAFRPVRDFLKTEQQKEKAKKKEEEKKEEEKKEEATKEEEKKEDIGESENSEQSSKEEEKKEEKKE

Protein Length: 817

Fln nts: GTCTATGGGGAGAGGAACGAGAGCAGAAGAGACAGGCGGCCTGGGTTGAGCTGAAATTGTAGCTTTGGAAGAGAATTAGGTGTGGAGGCTCTGGGATTCGATCCGAGGTCGGAGGTCGCTTGAATCAAAGACCCCAAAACATATCAG_-_ATGGAGCAGAAGAACGTATTGATGTCGGCCCTCAGCGTGGGGCTCGGAATCGGCCTGGGTGTCGGACTCGCCACAGGCCGTTCGCAGACCTTTCAGAAATGGACGTCTCCCTGTTCTTCTGTCAATTACCAGGAAATAATGGAACTCGAGCTCAACAATCGCCTCCTTGACGGGAAATCTTGTAGTGTTACCTTCGAAGAATTCCCTTATTCCCTCAGTGAGCAGACGAAGGCTTTGTTGACGAGCGGGGCTTTTGTTTATTTGAAAGAAGAGCAGTTTTCTAAGTACACTCGAAATCTCTCGCCTGCGAGTCGAGCCATTTTGCTCTTGGGCCATGCAGAGCCCTACCACCAAATGCTTGCCAAGGCATTGGCACATTACTTTGATGCTAAATTGCTTTTGCTGGATGCTACTGACTTTTGCTTGAAGTTGCAAAGCAAACATGGAGGAGGCACTGATTCTCAGGATTTAAAGTCCTTTTCTGAAGCTGCATTAGAGCGCATTGGTAGCCTGTTTGAATCCTTCACCCTGCCTACAGGTGCAGAGCAAAGAAATTGCAAATCAGCAGGCAGTCTTTGGCGATCAAACAGTGGCATTGAACCAAAGCTGACGTCCTCTGAAGGAACAAGTAACCTTCAAAGTTGTAGGAGTAACTCGGCATCAGAACCTGATTTCTCCAGATATGGGTCATCTGTGATGAACACCACAAATCAAGCTTCATTAAAACGTGCAAATTCTTGGTCATTTGACGACAAATTACTTGTGCGATCGCTTTATAAGGTCTTGGTTTCTGTCTCAAAGACTAGTCCTGTGATTTTGTATTTGCGGGATATTGAGAGACTTGTATTCAGAGGGCCAAAGACCTATCAAATGTTTTTTAATATGATAAAACAACTCTCTGGGCCCATTTTAATACTAGGTTCCAGAATCTTGGGCTCACAAGAGAAGCCATGCTATGGAGATACTGAGAAAAAGTTGTCAGATTTATTTCCCTATACCATTGACACAAAACCCCCAGAGGATAATACAGAACATGGGGCCTGGAAGAGCAAGCTTGAAGAGGACATGAAAGCAATCGAGTTTCAAGACAACAGGAACCATGTATCAGAGATACTTGCAGCAAATGATGTTGAATGTGATGATTTGGGAAGCATTTCTTTTGGTGATACAATCCTTCTTAGTAATTATATTGAGGAAATTGTGGTCTCTGCGATTTCTCATCACCTCATGAACACAGAGCAGCCCGATTATCGTGGTGGACGTCTTATTATCTCTTCCAAAAGCTTGGCACATGGATTGAGCATATTCCAAGCAGGACAGATTGATAGCAAGGACACACTCCAAATGGAATCCAATGGAGAAAACCCACAGGATCCAACAAGTGGAAAGATTGAAGCAAAAATGGAGTCTCCTTCTACAGAAAAAAAACCTGAAGGGGAAAAAACAGATTCTGCTTCAAAGGGGGATATGCCTAAGAAAGAAGCAGATAACACTAAAGAAGGGGGTCCTGCAGTAACTCCGAAACCGGAAGTTCTTCCAGACAATGATTTTGAAAAGAGGATCAGACCGGAAGTCATTCCTGCAGGTAAAATTGGTGTTACATTTGATGACATTGGTGCACTGGAAAATGTTAAAGAATCACTGCAGGAACTTGTAATGCTACCTCTTCGACGGCCAGACTTGTTTAAGGGGGGTCTCCTTAAGCCATGCAAAGGCATTCTACTTTTTGGACCCCCTGGAACAGGGAAAACAATGCTAGCAAAGGCCCTTGCCACTGAGGCCAATGCCAGCTTTATAAATGTCTCAATGTCTACCATAACTTCAAAGTGGTTTGGAGAAGATGAGAAGAATGTAAGGGCATTGTTCTCTTTGGCTGCAAAAGTTTCCCCTACGATTATTTTCATTGATGAGGTTGACAGCATGTTAGGCCAAAGGTCTAGAGTTGGTGAACACGAGGCAATGAGGAAAATAAAGAACGAGTTTATGGCTCACTGGGATGGTTTGCTATCAAAGACTGCAGAGCGTGTTCTTGTTCTCGCTGCAACTAACAGACCTTTCGATTTGGATGAAGCTATAATCAGACGGTTTCAGCGAAGAATCATGGTTGGACTGCCAAATGCTGAGAGTAGAGAAAGAATTCTAAGGACACTCCTTGCAAAAGAGAAACTTGAGGAAGGCTTTGATTTCAAGGAGCTCGCAACAATGACAGATGGTTATACTGGCAGTGACCTCAAGAATCTATGTACAGCCGCAGCTTTTCGGCCAGTTCGGGATTTTCTGAAGACAGAGCAACAGAAAGAAAAGGCTAAGAAGAAAGAAGAGGAGAAGAAAGAAGAAGAGAAAAAGGAAGAGGCAACGAAAGAAGAGGAGAAAAAAGAAGACATAGGGGAGTCAGAGAACTCTGAACAATCTAGCAAGGAAGAGGAGAAGAAAGAAGAGAAGAAAGAAG

Fln Alignment:

Contig7441___KKEADNTKEGGPAVTPKPEVLPDNDFEKRIRPEVIPAGKIGVTFDDIGALENVKESLQELVMLPLRRPDLFKG-GLLKPCKGILLFGPPGTGKTMLAKALATEANASFINVSMSTITSKWFGEDEKNVRALFSLAAKVSPTIIFIDEVDSMLGQRSRVGEHEAMRKIKNEFMAHWDGLLSKTAERVLVLAATNRPFDLDEAIIRRFQRRIMVGLPNAESRERILRTLLAKEKLEEGFDFKELATMTDGYTGSDLKNLCTAAAFRPVRDFL
D5AE60______________KKAAERKKEISKRFG-RPRVLT-NPYEDVIACDVINPDDIDVTFDSIGGLEKVKQELYELVILPLQRPNLFGHCKLLSPPKGVLLYGPPGTGKTLLAKAIARESGAVFINVRVANLMSKWFGDSQKLVTAVFTLAQKLQPAIIFLDEVDSFLGQR-RSSEQEAFTNMKTEFMALWDGFTTDQTARVTVLAATNRPEELDEAILRRLPRVFEVGMPSCIQRAKILEVILKGENVEDDIDYDYIASLCEGYSGSDLTDLCKQAAYFPIRELL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
121		66		33	0.997452
203		83		16	0.994512
612		60	20	20	0.99255
614	20		60	20	0.99255
1188	11		88		0.923564
1190	11	88			0.923564
1192			88	11	0.923564
1229	33		66		1.0
1663		83		16	0.994512
1730		66		33	1.0
1941	10			90	0.90298
1943			10	90	0.90298
1944	90		10		0.90298
1945		11	11	77	0.968132
2399	35	64			1.0
2414	80		20		1.0
2429	23		76		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain