SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7432

Length: 1684 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7432

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	guanylyl cyclase [Solanum lycopersicum]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Guanylyl cyclase	-	-	2.454e-26	-

Source	Gene names
Sma3	At5g05930; CHLREDRAFT_98614; GSVIVT00018367001; MICPUCDRAFT_36926; MICPUN_50423; OJ1126_D01.8; Os05g0453500; OsI_20176; OsJ_18763; PHYPADRAFT_149742; PHYPADRAFT_170873; POPTRDRAFT_720589; RCOM_1483470; VITISV_014350;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C39, bacteriocin processing	IPR005074	-	0.0	-
Sma3	Guanylyl cyclase	IPR018616	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05930.1	ATGC1, GC1 guanylyl cyclase 1 chr5:1780270-1782659 REVERSE LENGTH=274	60%
RefSeq	Arabidopsis thaliana	NP_568159.1	guanylyl cyclase 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002311194.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACA7

Fln msg: your sequence is longer than subject: 293 - 146

Fln protein: MDATVAGRPSLGRSSLLSPERNNGHSRMENSGWVAASLLESYTWDSSYSPLIDSSIDVPRSRFVEVPHVRQLWTWDCGLACVLMVLKALGIEDCDMESLAKLCSTTSIWTVDLAHLLRRFSINVSFLTVTIGANPNFARETFYKEHMAEDGERVNGLFEKAPQAGIQIQWRSISGEELSMLILSGNYIAIALVDKYKLSQPWLEELCLSDCCGVSSGYTGHYVVICGYDMETNEFEIRDPASSRESERISLWCLDEARKSFGTDEDILLISFDKFERETRAKFSVNCMNKEL*

Protein Length: 294

Fln nts: GATGGGGATTACAGTTAGATGATGAAATCCATTGGAACGTACTGAAAATAATTGAAACGCGGGTAACTCGAACATTTAACTATGAGAGAATGAAGACGAACCATTAAAGGATTTGGTTAAAGACTTGTCAAGTTGCGAAGTGGACTGAGAGATCTCGCAGTCAACTGTAATCCGAGACATTGTTCCATTTCGTACTGTGAGATTATCCATTTAGATCCAGGAATTCCTCTAATCACAATTGGTCTACTCTCCGAGGATGAATCCACTGTGCCAATACTTGAGATTTTGTGATGTCAAGAATAAGGAAGGGCTGACACAGTGATTGATACTCAGGCAAGGGTTAATGAGGCTTCTCATTCTTCTTTTGTGATAGTCGAGAAGACATATTTGGAGTGGCCCCTGATTTCTGCTCCTTGGCTACAGAAA_-_ATGGATGCAACAGTGGCGGGGCGACCATCGCTTGGTAGGTCGTCCCTCCTCTCACCAGAGAGGAACAATGGACACTCTCGCATGGAAAACAGTGGATGGGTAGCTGCTTCTTTACTTGAATCATATACTTGGGATTCTTCTTATTCTCCTCTAATAGATTCCAGCATTGATGTTCCTCGCTCTAGGTTTGTGGAGGTTCCTCATGTTCGACAACTGTGGACTTGGGATTGTGGCCTTGCATGTGTTTTGATGGTCTTGAAAGCTCTAGGCATTGAAGACTGTGATATGGAATCCTTGGCCAAACTTTGCAGCACAACAAGTATTTGGACTGTTGATTTGGCGCATTTGTTACGAAGATTTTCTATTAATGTGTCTTTTCTCACTGTTACTATTGGAGCAAACCCCAATTTTGCACGAGAGACCTTTTATAAGGAGCATATGGCAGAAGATGGGGAGCGTGTGAATGGACTGTTTGAGAAAGCTCCACAGGCTGGCATTCAAATCCAGTGGAGATCTATCAGTGGTGAAGAACTCTCTATGCTTATATTATCAGGAAACTATATTGCCATTGCGTTAGTTGACAAGTACAAACTCAGCCAGCCCTGGTTGGAGGAATTGTGCCTTTCAGACTGCTGTGGAGTAAGCTCAGGATACACAGGTCATTATGTCGTAATTTGTGGCTATGATATGGAAACTAATGAATTTGAAATAAGAGATCCAGCAAGCTCTAGAGAAAGTGAGAGAATCTCCCTATGGTGCTTAGATGAAGCTCGGAAATCCTTTGGCACAGATGAAGATATTCTTCTGATTTCATTTGACAAATTTGAGAGGGAGACGAGAGCCAAGTTTTCCGTCAATTGTATGAATAAAGAATTGTAG___CTTCAATCCATATACGATTTCCCAATCTTATGAGCCAAGATAATTTGGTAATTTGTATTTTATTTACCAGGTACAACTTTATTGCACTGTTTATCCATTTTCTATTCATTTGTAAACTGAGAAATAGTACATTTGAACTGTAAGAATATTCTGAATAAGCTCATCAATGCACTCATACTACTATTCGTAGTTGAGCTCGATGTTGTGAGAACCGACTGCTAATTGGTTGATCAATTCTTTGGATGTAGTTGAATTTGTCCCAATTTCTCGTGGGATTATCATTTATATAAAGTAAACAAAATATTTGAATACTGTAAACCGATTCTCGCGCCCATCATTCAATAAAGAAGTTTAGCAATAAATAACTTTTACAACATGC

Fln Alignment:

Contig7432___MAEDGERVNGLFEKAPQAGIQIQWRSISGEELSMLILSGNYIAIALVDKYKLSQPWLEELCLSDCCGVSSGYTGHYVVICGYDMETNEFEIRDPASSRESERISLWCLDEARKSFGTDEDILLISFDKFERETRAKFSVNCMNKEL
D5ACA7______________MAEDGERVNGLFEKAPQAGIQIQWRSISGEELSMLILSGNYVAIALVDKYKLSQPWLEELCLSDCCGVSSGYTGHYVVICGYDMETNEFEIRDPASSRESERISLWCLDEARKSFGTDEDILLISFDKFDRERRATFSVNCMNKEL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1262		80		20	0.995493
1266	80		20		0.995493
1380	83		16		0.994512
1420	87		12		0.992554
1534			45	54	1.0
1625		33		66	1.0
1642	75			25	0.996473
1659	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain