SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7420

Length: 1933 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7420

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor gb\|AAA34161.1\| ATP-dependent protease (CD4B) [Solanum lycopersicum]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Heat shock protein 101	-	-	6.982e-16	-

Source	Gene names
Sma3	AT4g14670; At1g74310; At2g25140; At3g45450; At3g48870; At5g15450; At5g50920; At5g51070; AtclpC; CD4A; CD4B; CHLREDRAFT_107731; CHLREDRAFT_110360; CHLREDRAFT_195417; CHLREDRAFT_195422; CHLREDRAFT_195423; CHLREDRAFT_195426; CLP2; CLPA; CLPB1; CLPB2; CLPB3;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	Tic complex	GO:0031897	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	nucleotide-excision repair	GO:0006289	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-
Sma3	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	protein unfolding	GO:0043335	Biological Process	-
Sma3	protein import into chloroplast stroma	GO:0045037	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G50920.1	CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 CLPC homologue 1 chr5:20715710-20719800 REVERSE LENGTH=929	85%
RefSeq	Arabidopsis thaliana	NP_568746.1	ATP-dependent Clp protease ATP-binding subunit ClpC [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002322299.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS4

Fln msg: your sequence is longer than subject: 555 - 463

Fln protein: MAGTLAQSAILPGSIINSKYGPVKGSKRSRRAVKMIGNAHAHSFPMQTFSGLRRVTSIDNIACPRKDFHAAVAAAVYLPNSKGNARRGVVVAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKEARIEVEKVIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHSYIGSEHLLLGLLREGEGVAARVLENLGAEPSNIRTQVVRMVGENRDDDRAVVGPGSGSNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEVKQSDDLILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVQVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKAQIVAITEKG*

Protein Length: 556

Fln nts: CGGGGTGGTGACCTCTCCAGAAGCTCTCTCCAATATTCTTCACCTTAGTCGTGACCTTCACTGAAACTCAAGTGTGTTTCATTTTCTTATTAGGTTATTGTAGGGGCAGTCGGGCCGGCCATCCGGAGACATTGTTCCATTATAATTTCCCCCGGGGCAGTTTGTTGGGCATTTGATGATCCTCCTGCTCCTAGAGCAATAAGGTTCTGTATAACTTGTCAAGTGAAAATTAATCTGGGTAGGGTGTAAAG_-_ATGGCTGGGACACTTGCACAATCAGCAATTCTGCCGGGTAGCATAATCAACTCAAAATATGGTCCAGTAAAGGGATCCAAAAGATCAAGGAGAGCTGTAAAGATGATTGGAAATGCACATGCCCATTCTTTCCCCATGCAGACATTTTCTGGTTTACGACGAGTAACATCCATTGACAATATTGCATGTCCTCGGAAAGACTTTCATGCGGCAGTTGCAGCTGCCGTATATCTTCCAAATTCAAAGGGAAATGCAAGACGAGGGGTGGTTGTTGCTATGTTTGAACGTTTTACTGAAAAAGCCATTAAAGTAATTATGCTTGCTCAGGAAGAAGCAAGACGCCTTGGACACAACTTTGTAGGTACAGAGCAGATACTGTTAGGTCTTATTGGTGAGGGAACAGGCATTGCAGCCAAAGTATTGAAGTCTATGGGGATTAATCTTAAGGAGGCTCGGATTGAGGTTGAGAAAGTTATTGGTAGAGGCAGCGGATTTGTTGCTGTGGAAATTCCATTCACTCCCAGAGCAAAGCGTGTATTGGAACTGTCATTGGAGGAAGCCAGACAACTTGGCCACAGTTACATAGGATCTGAGCACCTGCTTTTGGGATTACTAAGGGAGGGTGAAGGTGTTGCAGCTCGGGTGCTTGAAAATCTTGGAGCAGAACCGAGTAACATTCGTACGCAAGTAGTTCGCATGGTGGGAGAAAATAGAGATGATGATAGAGCTGTGGTCGGACCTGGAAGCGGCAGTAACAAGACTCCAACACTTGAAGAGTATGGAACGAATTTGACTAAGTTGGCAGAGGAGGGAAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGGGTTACTCAAATTTTGGGACGTCGTACAAAGAATAATCCTTGTCTTATTGGTGAGCCAGGTGTGGGAAAGACAGCTATTGCTGAGGGTCTTGCCCAGCGAATTGCATCTGGGGATGTTCCAGAAACGATTGAGGGTAAAAAAGTGATTACCTTAGATATGGGCTTACTTGTTGCTGGGACCAAGTACCGGGGAGAGTTTGAAGAAAGATTAAAGAAGTTAATGGAGGAAGTTAAACAGAGTGATGATCTAATACTCTTCATAGATGAAGTGCATACCTTAATTGGAGCAGGAGCAGCAGAAGGTGCTATTGATGCTGCCAACATTCTAAAGCCTGCTCTTGCACGCGGCGAGCTACAGTGCATCGGGGCCACCACACTTGATGAATACAGAAAACACATTGAGAAGGACCCAGCTCTTGAAAGGAGATTCCAGCCAGTCCAGGTTCCAGAGCCTACTGTTGATGAGACCATACAGATTTTGAAAGGTTTGCGAGAACGATATGAGATTCATCACAAGCTGCGTTATACTGATGAGGCATTGGTTTCTGCTGCTCAATTGTCCCATCAGTACATCAGTGATCGTTTCCTTCCCGATAAGGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTGAGATTGAGGCATGCACAGCTTCCCGAGGAGGCCAGAGAGCTTGAAAAAGAACTTAGACAAATAACAAAAGAAAAGAATGAAGCTGTTCGAAGCCAGGACTTTGAAAAGGCTGGAGAGCTACGTGACCGGGAGATGGAGTTGAAGGCACAAATTGTTGCTATAACAGAGAAGGGTTAA___GAAAAATCAAAAACATT

Fln Alignment:

Contig7420___GAEPSNIRTQVVRMVGENRDDDRAVVGPGSGSNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEVKQSDD-LILFIDEVHTLXXXXXXXXXXXXXXXLKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVQVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEK-------ELRQITKEKNEAVRSQDFEKAGELRDREMELK
B8LQS4______________GVSAARVKSEVEKLRGEGKKVDTA-----SGDTNFQALKTYGRDLVE--DAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLDVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEDAQGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVTDTISILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDTLERKRIQLEVEMHALEKEKDKASKARLVEVRKELDDLRDKLQ

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
135	33			66	0.997452
136	33			66	0.997452
137		66		33	0.997452
138		66	33		0.997452
139	66			33	0.997452
307	87		12		0.992554
460		88		11	0.923564
469		88		11	0.923564
561			80	20	0.995493
562		14		85	0.993533
581	28		71		1.0
864		88	11		0.923564
866	88		11		0.923564
867	88		11		0.923564
979		85		14	0.993533
1054		80		20	0.995493
1125		80		20	0.995493
1209	16		83		0.994512
1244	83			16	0.994512
1245	83		16		0.994512
1246	83		16		0.994512
1247	83		16		0.994512
1321	90		10		0.90298
1323			10	90	0.90298
1612		11		88	0.923564
1644	10			90	0.90298
1780		8		91	0.999807
1910	33		66		0.997452
1911		33	66		0.997452
1912	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain