SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7419

Length: 2733 nt

UniGene Fasta

>sp_v3.0_unigene7419
GCTGGGAATCAGGAATTTATGTTTTCTATAATTTTGCACTTCCCACGATGCGAAACGAAATCGTGTTTCAACAGTTTAACCGTCGTGGAAAGGCATGACTCTGTATCTTCCTCCAGCTGTCTAGAAATTTGTTATACTGTAATGAATTGAATCTGGGCCTATTCTGCTTGCACCTTCACACGTTTGGAATCAAACAACAGCCCAATCAACCTTTCGGAATCAGACCCCCGAACAACCAACTCTATAAATTCATGAAAATATTAATTCATGGGATGCCAGTGAATGGATGATCCCTTCCATTTCCATTAAAAATCCCTTTGCCATCTTTCAATTTTTGGATTGTTGCTTCACATGCTCCTTGCAGGAGCTCTGGAAATTTCCCTTATGAAATGCTTTGAGGTTTCCTCTGTTAATCTGGATTCTAACACCATTTCTGGTAATTAGCCCGCACTCCAAAGGCAGGTAAGAAAAGAATATACACTCCGTGATCACACTGCCAACGGAGATCTAACTCGGGAAGAGAAAACTCGACGTCACCCATGACCGGAAAGGGGAAAATCGCAAACGACGGGACACCAACTATTTATGACTAAAGCCTTCTGAATGAGCGTGCTACTGCAACCTTTCCTGCAAAAGAAAACAAATACTGAGTGAGTCACTGCAGAACGCACATGTGCCATCGCAGCAACAGCACAACCCACTCTATAAATTTCTCGCATTTCTCTGCATGCGAGGAGATTTGGGTGTGTAGAGGCTGCTGTCAAGGGAGCTTCAGAAATGGGCAGAGCAGGCCTCAGAACGAGCTTGTTGTGTGTACTGATTTTTCTGTCTGGATTGGCTCTTTCAAATGCTCAGTCAAAAATAAGTTCCTCCACAACAGGAATCAACTATGGACAAGTCGCAGATGACTTGGCATCGCCGGAACTAGTAGTGGGTCTTCTGCAGACCAACGGTATCAACAAAGTGAAACTCTACAGCGTAAATGAGACAGTTCTCAAAGCATTTGCAAACACTGGTATAGAATTGATTGTTGGAATGGGTAATGAAAACGTTGGCAACATGACAGATCCAACTAAGGCCACTGAATGGGTAAATGAAAACATTCAGGCCTACTTACCAGCCACAAAGATCACAGGCATAGCTGTAGGGAACGAGGTTTACACAGGAACTGACACGCAGTTAATGGCAAACCTGGTTCCCGCAATGAAAAACATCCATTCGGCCCTTGTCAGCATCGGTGCAGATATGAATATTAAAGTTACCACTCCCCATTCTCTTGCTGTACTTGGGAATTCATTTCCACCCTCTGCTGGTTCCTTTGCATCAAACGTGAAGAGCCTAATGAAACCACTCTTGGATTTGTTGTCTCAGATTGGTTCTCCTTTCTTCATAAATGCTTATCCATATTTTGCATACAAGGGTGACCCCAGCCAGATATCCCTGGCTTATGTACTATTCGAACCAAATACAGGTGTTATTGACCCGAACAATAATGTTCATTATAACAACATGTTATATGCACAGGTTGATGCTGTTTATTCTGCGCTGTCTGCTCTAGGATATGCTAATATAGAAGTCACGGTCTCCGAAACTGGATGGCCTTCAAAGGGAGACGCCAATGAAGCAGGTGCAACCCTTCAGAATGCTCAGACTTATAATGGGAATTTAATTCAACTGCTCGCTCAGAAGCAGGGGACTCCCTTGAGACCCAAACTTGTTTTGCAGGCTTACCTGTTTGCATTATTCAATGAGGATATGAAGCCTGGGCCAGCCTCCGAGAGGAACTATGGGCTCTTTAAGCCAGATGGAACTGCAGTTTACAATCTGGGATTATCCGGAACATTGTCTACTGGTTCACCATCTACTGGTTCAACGTCTACTGGGTCCTTCACGACTGGTACTCCACCTCCAGCTGCTTATCCAAGTACTACGGATAGTTCATACTCGTATTATTCTTCTGCCAAGGAGACCTATTCTGTTCTCTCCTTCTACAATCATCTTCTGCTTTTGGGCCTCTCTACTTTCTTTGTTGTTCCACTGTTTCTTCCATGATTGGAGCCATGGAAGTTCAGTAGAAATTTACATGTTTCCGTTCATTCAAAATCAGCTCAAACAACGAAGATTCAGACAAAATCCGGCTGCAGGCAAGTAAATATATACTCTGCTGACAGTGAACCAGAAGGCTTCTGTTTCTACACTAACAAACTGATAGCTCGAGCATTCTCATTTATTAAGGATGATAATTCAAAATTGTAACATTGCAAACATCAGCATCAACTCTGTTACTATTACAAGCAATGGATGCGTCGCTGATGCTGCGGGAGTGTAAATTTTTAGTTTACTGCGGTTGGTAGTTGAGTAGGTTGACTACATTTCTGTTGTAAAGCCGTTGTCGGGCATTGTTTATCTGGGCGAGTTAGCGCCAGGAAGCTAAATGTACCAAATATTTATTTTTATTTTATTAAGAATATAAATTTAGTCGTCTTCTGCTGCCCAGAATATGGATTGCCTTTGTTTGGTTAGTAGATAAATTCAGCGTTACTCTACTTATCTTTAATTTCTCTGTCAACGTAAAAAGTGTGGTCCCATGAATGGGCTCAATCATGGCGGAAACTCTGCGGCAGAATTGGCATGTGCAATGTAAAACGTGGCAGTCAGCAGTGGGTGTACATTCAACCTTCGTTGGGCAGTTGCCACGTTGGCAATGATTTAGTGGTTTAGGTTTAATGTTTA

Ace file of the UniGene sp_v3.0_unigene7419

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RYW1_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G32860.1	Glycosyl hydrolase superfamily protein chr1:11907308-11908803 REVERSE LENGTH=426	52%
RefSeq	Arabidopsis thaliana	NP_174563.2	glucan endo-1,3-beta-glucosidase 11 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002317055.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR54

Fln msg:

Fln protein: MGRAGLRTSLLCVLIFLSGLALSNAQSKISSSTTGINYGQVADDLASPELVVGLLQTNGINKVKLYSVNETVLKAFANTGIELIVGMGNENVGNMTDPTKATEWVNENIQAYLPATKITGIAVGNEVYTGTDTQLMANLVPAMKNIHSALVSIGADMNIKVTTPHSLAVLGNSFPPSAGSFASNVKSLMKPLLDLLSQIGSPFFINAYPYFAYKGDPSQISLAYVLFEPNTGVIDPNNNVHYNNMLYAQVDAVYSALSALGYANIEVTVSETGWPSKGDANEAGATLQNAQTYNGNLIQLLAQKQGTPLRPKLVLQAYLFALFNEDMKPGPASERNYGLFKPDGTAVYNLGLSGTLSTGSPSTGSTSTGSFTTGTPPPAAYPSTTDSSYSYYSSAKETYSVLSFYNHLLLLGLSTFFVVPLFLP*

Protein Length: 426

Fln nts: GCTGGGAATCAGGAATTTATGTTTTCTATAATTTTGCACTTCCCACGATGCGAAACGAAATCGTGTTTCAACAGTTTAACCGTCGTGGAAAGGCATGACTCTGTATCTTCCTCCAGCTGTCTAGAAATTTGTTATACTGTAATGAATTGAATCTGGGCCTATTCTGCTTGCACCTTCACACGTTTGGAATCAAACAACAGCCCAATCAACCTTTCGGAATCAGACCCCCGAACAACCAACTCTATAAATTCATGAAAATATTAATTCATGGGATGCCAGTGAATGGATGATCCCTTCCATTTCCATTAAAAATCCCTTTGCCATCTTTCAATTTTTGGATTGTTGCTTCACATGCTCCTTGCAGGAGCTCTGGAAATTTCCCTTATGAAATGCTTTGAGGTTTCCTCTGTTAATCTGGATTCTAACACCATTTCTGGTAATTAGCCCGCACTCCAAAGGCAGGTAAGAAAAGAATATACACTCCGTGATCACACTGCCAACGGAGATCTAACTCGGGAAGAGAAAACTCGACGTCACCCATGACCGGAAAGGGGAAAATCGCAAACGACGGGACACCAACTATTTATGACTAAAGCCTTCTGAATGAGCGTGCTACTGCAACCTTTCCTGCAAAAGAAAACAAATACTGAGTGAGTCACTGCAGAACGCACATGTGCCATCGCAGCAACAGCACAACCCACTCTATAAATTTCTCGCATTTCTCTGCATGCGAGGAGATTTGGGTGTGTAGAGGCTGCTGTCAAGGGAGCTTCAGAA_-_ATGGGCAGAGCAGGCCTCAGAACGAGCTTGTTGTGTGTACTGATTTTTCTGTCTGGATTGGCTCTTTCAAATGCTCAGTCAAAAATAAGTTCCTCCACAACAGGAATCAACTATGGACAAGTCGCAGATGACTTGGCATCGCCGGAACTAGTAGTGGGTCTTCTGCAGACCAACGGTATCAACAAAGTGAAACTCTACAGCGTAAATGAGACAGTTCTCAAAGCATTTGCAAACACTGGTATAGAATTGATTGTTGGAATGGGTAATGAAAACGTTGGCAACATGACAGATCCAACTAAGGCCACTGAATGGGTAAATGAAAACATTCAGGCCTACTTACCAGCCACAAAGATCACAGGCATAGCTGTAGGGAACGAGGTTTACACAGGAACTGACACGCAGTTAATGGCAAACCTGGTTCCCGCAATGAAAAACATCCATTCGGCCCTTGTCAGCATCGGTGCAGATATGAATATTAAAGTTACCACTCCCCATTCTCTTGCTGTACTTGGGAATTCATTTCCACCCTCTGCTGGTTCCTTTGCATCAAACGTGAAGAGCCTAATGAAACCACTCTTGGATTTGTTGTCTCAGATTGGTTCTCCTTTCTTCATAAATGCTTATCCATATTTTGCATACAAGGGTGACCCCAGCCAGATATCCCTGGCTTATGTACTATTCGAACCAAATACAGGTGTTATTGACCCGAACAATAATGTTCATTATAACAACATGTTATATGCACAGGTTGATGCTGTTTATTCTGCGCTGTCTGCTCTAGGATATGCTAATATAGAAGTCACGGTCTCCGAAACTGGATGGCCTTCAAAGGGAGACGCCAATGAAGCAGGTGCAACCCTTCAGAATGCTCAGACTTATAATGGGAATTTAATTCAACTGCTCGCTCAGAAGCAGGGGACTCCCTTGAGACCCAAACTTGTTTTGCAGGCTTACCTGTTTGCATTATTCAATGAGGATATGAAGCCTGGGCCAGCCTCCGAGAGGAACTATGGGCTCTTTAAGCCAGATGGAACTGCAGTTTACAATCTGGGATTATCCGGAACATTGTCTACTGGTTCACCATCTACTGGTTCAACGTCTACTGGGTCCTTCACGACTGGTACTCCACCTCCAGCTGCTTATCCAAGTACTACGGATAGTTCATACTCGTATTATTCTTCTGCCAAGGAGACCTATTCTGTTCTCTCCTTCTACAATCATCTTCTGCTTTTGGGCCTCTCTACTTTCTTTGTTGTTCCACTGTTTCTTCCATGA___TTGGAGCCATGGAAGTTCAGTAGAAATTTACATGTTTCCGTTCATTCAAAATCAGCTCAAACAACGAAGATTCAGACAAAATCCGGCTGCAGGCAAGTAAATATATACTCTGCTGACAGTGAACCAGAAGGCTTCTGTTTCTACACTAACAAACTGATAGCTCGAGCATTCTCATTTATTAAGGATGATAATTCAAAATTGTAACATTGCAAACATCAGCATCAACTCTGTTACTATTACAAGCAATGGATGCGTCGCTGATGCTGCGGGAGTGTAAATTTTTAGTTTACTGCGGTTGGTAGTTGAGTAGGTTGACTACATTTCTGTTGTAAAGCCGTTGTCGGGCATTGTTTATCTGGGCGAGTTAGCGCCAGGAAGCTAAATGTACCAAATATTTATTTTTATTTTATTAAGAATATAAATTTAGTCGTCTTCTGCTGCCCAGAATATGGATTGCCTTTGTTTGGTTAGTAGATAAATTCAGCGTTACTCTACTTATCTTTAATTTCTCTGTCAACGTAAAAAGTGTGGTCCCATGAATGGGCTCAATCATGGCGGAAACTCTGCGGCAGAATTGGCATGTGCAATGTAAAACGTGGCAGTCAGCAGTGGGTGTACATTCAACCTTCGTTGGGCAGTTGCCACGTTGGCAATGATTTAGTGGTTTAGGTTTAATGTTTA

Fln Alignment:

Contig7419___GASEMGRAGLRTSLLCVLIFLSGLALSNAQSKISSSTTGINYGQVADDLASPELVVGLLQTNGINKVKLYSVNETVLKAFANTGIELIVGMGNENVGNMTDPTKATEWVNENIQAYLPATKITGIAVGNEVYTGTDTQLMANLVPAMKNIHSALVSIGADMNIKVTTPHSLAVLGNSFPPSAGSFASNVKSLMKPLLDLLSQIGSPFFINAYPYFAYKGDPSQISLAYVLFEPNTGVIDPNNNVHYNNMLYAQVDAVYSALSALGYANIEVTVSETGWPSKGDANEAGATLQNAQTYNGNLIQLLAQKQGTPLRPKLVLQAYLFALFNEDMKPGPASERNYGLFKPDGTAVYN
B8LR54______________GTSVMGRGGLKMSCLWVLVLLSGLALSNAQSKISSSTTGINYGQVADNLASPELVVGLLQTNSINKVKLYSVNETVLKAFANTGIELIVGMGNEDVGNMTDPTKATEWVNENIKAYLPATKIRGIAVGNEVYTGTDTQLMANLVPAMKNIHSALVSIGADTNIKITTPHSLAVLGNSFPPSAGSFASDLKSLMKPLLDLLSQIGSPFFINAYPYFAYKGDPSQISLNYVLFEPNSGVVDPNNNIRYNNMLYAQVDAVYSALSALGYTNIEVTVSETGWPSKGDANEAGATLQNAQSYNGNLLQLLAQNQGTPLRPKLVLQAYLFALFNEDMKPGPASERNYGLFKPDGTAVYN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
322	14	85			0.993533
348		14		85	0.993533
532	57		42		1.0
706		33		66	0.997452
740	25	75			0.996473
748	20		80		0.995493
751			20	80	0.995493
752	80		20		0.995493
759	80		20		0.995493
817		20		80	0.995493
1587		12		87	0.992554
1773		12	87		0.992554
2343	87		12		0.992554
2487		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain