SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7406

Length: 1704 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7406

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG1100 GTPase SAR1 and related small G proteins	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Rab11/RabA-family small GTPase	-	-	-

Source	Gene names
Sma3	RabA24; PHYPADRAFT_191152;

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G07410.1	ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b RAB GTPase homolog A2B chr1:2276270-2277154 FORWARD LENGTH=214	75%
RefSeq	Arabidopsis thaliana	NP_172221.1	RAB GTPase homolog A2B [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002315193.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACM6

Fln msg:

Fln protein: MARKVDDEYDFLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKNATFDNVKRWLRELRDHADSNIVIMLVGNKCDLNHLRAVPIDEAQDFAEKEGLSFMETSALESTNVEKAFQSILAEIYQIVKRKSLAAEEAASSGPSQGTPINVTDPEAVAKKRSCCL*

Protein Length: 216

Fln nts: GATCCATCTGTTGCTTATAGATACGTTACAGTAAATCCTTATTCATAAATTGCAAGAAGCCTAGGAGTCATTTGTGGCCATTTGCATGCTCTGTCTTGATCTCTGTGCATTGGCCAACCCAAAGCCAGGCCATTTTCATCTGTCTAGGTGTTGGGTGACGTGAAAGGGGCTTTCTTTGGTAAATCTTATATTTACCCTGTGAAGGCCTAAACCTTTCGCACTCTTGTACTCAAATTTGATTTTTACAATTTGGGCCTTTCGCACTCTTGTACTCAAATTTGATTTTTACCATTTGGGTCTGTAAGGGAGTGTCATTGATTCTGAAGCCTTTGGGGTATTTACATTTTACAGTGCAATTTTACTGAGTTTTGTGTGTGAGCGCTGGGTTAAGGTTACTGTGAGG_-_ATGGCACGCAAGGTTGATGATGAATACGATTTCTTGTTCAAGGTGGTGTTGATTGGAGATTCAGGAGTCGGGAAGTCGAATCTTCTTTCCAGATTTACTCGAAATGAATTCTGCCTGGAGTCCAAATCTACCATCGGTGTGGAGTTTGCAACTCGAACAATCCAGGTAGATGGCAAGACAATCAAGGCACAAATATGGGATACAGCTGGCCAAGAGAGGTATCGGGCAATCACAAGTGCTTATTACAGAGGTGCTGTGGGAGCTTTGTTGGTGTATGATATTACAAAGAATGCTACTTTTGATAATGTGAAGCGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCAAACATCGTTATCATGTTGGTTGGCAATAAATGTGACCTGAACCATCTGAGAGCTGTGCCAATAGATGAGGCACAGGATTTTGCTGAAAAAGAGGGCCTTTCCTTCATGGAAACATCCGCATTGGAGTCTACAAATGTGGAGAAAGCTTTTCAGTCAATTCTCGCTGAAATCTATCAGATTGTGAAAAGGAAATCTCTTGCAGCAGAAGAGGCAGCCTCTTCTGGGCCTAGTCAGGGAACTCCAATTAATGTCACTGATCCTGAAGCAGTTGCAAAAAAGAGAAGTTGCTGCCTTTAA___GTTTATATGTTTTCCATGTAATCTAGACATTTTAAGTCCATCCAAGTTGTCTAGGATTAATTGCTGTACAGCCAAATATATGTTCTCCGAATTTCCTTGTGTGCTTTGGTTTGTGGTAACTTCTAACATTGGTGAGATTATTTTTATGTACTTTGAGTGTCTGACTAGAGAAGCATGATCGCTAGAATTAAGGAGGATGCCTTGTAAGCTCTGAAAGTTATTTCAGAAGGTGAGCAGTCAGATTTGGTTATTTGTGAGCCATTAGTTAGACAGCAGCAGATGTATTTTTATTTGTTATATTGCAATGGTCTTAGGTTGCATGAATTAAGGAGGATGCCTTGTAAGCTCTGAAAGTTATTTCAGAAGGTGAGCAGTCAGCTTTGGTTATTTGTGAGCTATTAGTTAGACAGCCACAGATGATTTTTATTTTGTTATATTGCAATGGTCTTAAGGTTGCATGACTTTGAAACTCTTCCGTGTCTATCAGAAGTTATCAGATGATCATATTAGAATGTTTCCAAATTACTGGAACGAGGCTCTGTTAGGTGTTCTTAAATTAAATTACTCTTCTCTCTGAATGTGTCCAGATTATCAGAACAGGTGGTTGTTCCTTAAATTACTTAATATGAACTTACTTGAATACACAGATTCTATGG

Fln Alignment:

Contig7406___MARKVDDEYDFLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKNATFDNVKRWLRELRDHADSNIVIMLVGNKCDLNHLRAVPIDEAQDFAEKEGLSFMETSALESTNVEKAFQSILAEIYQIVKRKSLAAEEAASSGPSQGTPINVTDPEAVAKKRSCCL
D5ACM6______________MARKVDDEYDFLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKNATFDNVKRWLRELRDHADSNIVIMLVGNKSDLSHMRAVPIDDAQDFAEKEGLSFMETSALESTNVEKSFQSILTEIYQIVKRKSLAAEEAASAGPSQGTPINVSDAETIAKKRSCCL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1060	16		83		0.994512
1061		16		66	0.988813
1062	16			83	0.994512
1063	16			83	0.994512
1065	16	83			0.994512
1066		83	16		0.994512
1067	83		16		0.994512
1068			16	83	0.994512
1252		90		10	0.90298
1517		33		66	0.997452
1522	33	66			0.997452
1523	33			66	0.997452
1524	16	83			0.994512
1681	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain