SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7397

Length: 2925 nt

UniGene Fasta

>sp_v3.0_unigene7397
TTTTTTTGTGGGCTAATTCGATTGCCCACCAAAGCTCCGATTTAGGTGGCCGATTGCACGGTTCCCTGTTCCCCGTCTGCAATCGACGAAGCAGCCACGATCTCCGTTGGACTCCAGATACTACTTCATCTTCATAAATTTACATATGAGAGCCTTTGGACAAGTTAAGCAATTATCCATTAGCAGATTCAAGGTTGATTGAACTTGTGCATCAACATGTCTTTCCGTGATACTGGTATAAAGGTTCAGGTTATGGATGGTGAAAGAGAGAAATTTGTGAGGTTTGAAAGTGATTTAGGATCTCAGCAATCTCTGGAATCAGATAGGAAGGGACTGGGTAAATATAGTTTCAGTTTGGAAAGTTTTGAACGAACACCAAGCTCTATATCTTCTTCTGTGAGAAGAGGGTTTGAAAGGAGCTCAGAAGGATTGAAGAATATTGGTCGGTCATTGCGTTTTGGAGTTTCAAAAGAAGTATTTACTGAGGACCTCAAGTCCTCTGAAAAAGTAGTATTTAACCCTCAAGATAAGTTCTTCCAGAGATGGAATAAAATCTTTGTTCTAACATGCCTTGCAGCAATATCAGTGGATCCCTTATTCTTTTATCTTCCAGTCATTGATAAGAAATCAGAATGCCTTGATATAGATCACAACTTAGCAATCACTGCTACTGTGCTTCGGACAATCACTGATATTTTCTACTTAATACACATGGGCCTTCAGTTTCGTACTGCCTTCATTGCTCCATCATCTAGAATCTTTGGGAGAGGGGAGCTTGTCATTGATCCTGCACAAATAGCAAAGCGCTACTTGTCAACATACTTCATAGTAGACTTTCTCGCTGTTCTGCCTCTTCCACAGGTGGTTATTTGGATTATTATGCCACACATGAGAGGCGAAGCTGCATTGAACATCAAAAATACCTTGCGGTTTATTGTCTTGTTTCAGTACTTGCCCAGATTCTTTCGCATATTCCCACTTTGCGCACAAGTTATTGGAACAACTGGTCTATTGATTGAAACTGCATGGGCAGGCGCTGCTTTCAACTTACTTCTTTATATGCTTGCAAGCCATGTTCTTGGAGCTTGTTGGTATTTACTTGCATTGGAACGGCATGACACATGTCGGCGAAAGGCTTGTGCAAATAATGAAAGCCATTGTGAACTAGCATCTTTATATTGCAACGAGAAAAATACTTTGTCTAATCAATCCATAGAATTTCTAAATAACTATTGTAATACATCTGATACAAATGAAAATTTCAATTTTGGAATTTATGGTGATGCACTTGATTATGGAATCATTTCATCAAGAAAGTTTTTGGAGAAGTATTTCTATTGCTTATGGTGGGGCCTACAAAACCTAAGCTCACTTGGGCAGAATCTACAAACAAGCACTTATGTTTGGGAGATCGGTTTTGCTATGTTCATTGCCATCATTGGCTTGGTTCTATTTGCCCTTCTTATTGGAAACATGCAGACCTATTTGCAGTCTTCAACCACAAGGCTAGAAGAAATGCGAATAAAGCGGCGTGATACAGAGCAATGGATGCATCATCGTTTACTTCCAGAAAACCTGCAGAAATGTGTTCGTCGGTATGACCAGTATAAATGGCTGGAAACAAGAGGAGTGGATGAAGAGAACTTGATTCAGAACCTTCCAAAGGATCTGAGACGTGATATAAAACGTCATCTCTGCTTAGATTTGGTCAGGAGGGTACCTTTGTTTGAGAGTATGGATGATCAGTTGTTGGATGCAATGTGTGAACGTCTCAAGCCAGCACTTTATACCGAGCAGACATATATTGTCAGAGAGGGGGATCCAGTTGATATGATGCTTTTCATTATTCGTGGTCGTTTGGAAAGTGCAACAACAAATGGAGGAAGAACTGGATTTTTTAATAGTGGTGTTCTTCAACAAGGAGGTTTCTGTGGTGAAGAACTGCTGACATGGGCTTTAGATCCCAAGTCTGGTGCAAATCTTCCATCTTCTACCAGAACTGTAAAATCTCTGATTGAGGTAGAAGCATTTGCTTTAAGAGCAGAGGATTTGAAGTTTGTTGCAACTCAATTCAGACGTCTGCATAGCCGACAGGTTCAGCATACTTTTCGTTTCTACTCCCAACAGTGGCAAACATGGGCTGCTTGTTTCATCCAAGCAGCATGGCGTCGTTACTATAAAAAGAAAAATGAATATCTTCTCCATAAAGAGGAAAACAAATTTCGGGTAGCCCTGTCAGGGAGCAATGGCAATGCTTCTCCCAGTCTTGGAGCAACTATATATGCATCTCGGTTTGCAGCTAATGCCCTTCGTGCTCACAGACAACGAAATATGGAACGTCCAGCAAGGACCACCCCACTGATTAAGCTCCAAAAGCCAGCAGAACCAGATTTCACTGCTGAAGATTCTGAATGATAATTAAGAAAATACCACAACTGAATCTTTCTTACATCTGCTAGTTAAAACATAAACTGCCTCACTATCATCAAAACAAACTTAGGACAGATTAGGGATCTTCCCTCGTACTTACAAAAGTTCAGGTTTGCATGAAATGTGCAAGGTTGAAGAAATAGTTTCTTCTTCAATGTTTCAGGTTATTAATTTGTACAGTCCCATGCATTATATCTGGTTGATGATCAACCTATTGCAATCAATCCCATGTACAGAAGTTAGTTTGTGATTCTATTTATAAATTATAATGTGTGCTTGTTATGATCAAGTTACTGATAAACTATATGTGGGTGTCGCTGAAGTTCCTCTATAATTTTTTATGTCACAAAGCTGAAGCTAGATGCCTTGCTACCTGATGTCAAAAACATGTGGTGATGCACACCACTGCCAATATACAAAATATCGTCAGAATTTTTGGGAAATTGTTGAACGTTGTAGTAATGATCACGTTATACAATAATAAACTTAATTACC

Ace file of the UniGene sp_v3.0_unigene7397

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] sp\|O65717.1\|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gb\|AAK43954.1\|AF370139_1 putat	-	-	0.0	60%
FL-Next	sp=Cyclic nucleotide-gated ion channel 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Cyclic nucleotide-gated ion channel, putative	-	-	5.141e-36	-

Source	Gene names
Sma3	ACBK1; AT5G57940; ATCNGC11; ATCNGC12; At1g01340; At1g15990; At1g19780; At2g23980; At2g24610; At2g28260; At2g46430; At2g46440; At2g46450; At3g48010; At4g01010; At4g30360; At4g30560; At5g14870; At5g53130; At5g57940; CBP4; CBP7; CBT1; CNGC-A; CNGC-C; CNGC1;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apical plasma membrane	GO:0016324	Cellular Component	-
Sma3	ion channel activity	GO:0005216	Molecular Function	-
Sma3	intracellular cyclic nucleotide activated cation channel activity	GO:0005221	Molecular Function	-
Sma3	voltage-gated potassium channel activity	GO:0005249	Molecular Function	-
Sma3	cation channel activity	GO:0005261	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	cAMP binding	GO:0030552	Molecular Function	-
Sma3	cGMP binding	GO:0030553	Molecular Function	-
Sma3	ion transport	GO:0006811	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	calcium ion transport	GO:0006816	Biological Process	-
Sma3	cellular calcium ion homeostasis	GO:0006874	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Adenosine deaminase/editase	IPR002466	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	Ribonuclease H1, N-terminal	IPR011320	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G53130.1	CNGC1, ATCNGC1 cyclic nucleotide gated channel 1 chr5:21537830-21540490 REVERSE LENGTH=716	62%
RefSeq	Arabidopsis thaliana	NP_200125.1	cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002325129.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O65717

Fln msg:

Fln protein: MSFRDTGIKVQVMDGEREKFVRFESDLGSQQSLESDRKGLGKYSFSLESFERTPSSISSSVRRGFERSSEGLKNIGRSLRFGVSKEVFTEDLKSSEKVVFNPQDKFFQRWNKIFVLTCLAAISVDPLFFYLPVIDKKSECLDIDHNLAITATVLRTITDIFYLIHMGLQFRTAFIAPSSRIFGRGELVIDPAQIAKRYLSTYFIVDFLAVLPLPQVVIWIIMPHMRGEAALNIKNTLRFIVLFQYLPRFFRIFPLCAQVIGTTGLLIETAWAGAAFNLLLYMLASHVLGACWYLLALERHDTCRRKACANNESHCELASLYCNEKNTLSNQSIEFLNNYCNTSDTNENFNFGIYGDALDYGIISSRKFLEKYFYCLWWGLQNLSSLGQNLQTSTYVWEIGFAMFIAIIGLVLFALLIGNMQTYLQSSTTRLEEMRIKRRDTEQWMHHRLLPENLQKCVRRYDQYKWLETRGVDEENLIQNLPKDLRRDIKRHLCLDLVRRVPLFESMDDQLLDAMCERLKPALYTEQTYIVREGDPVDMMLFIIRGRLESATTNGGRTGFFNSGVLQQGGFCGEELLTWALDPKSGANLPSSTRTVKSLIEVEAFALRAEDLKFVATQFRRLHSRQVQHTFRFYSQQWQTWAACFIQAAWRRYYKKKNEYLLHKEENKFRVALSGSNGNASPSLGATIYASRFAANALRAHRQRNMERPARTTPLIKLQKPAEPDFTAEDSE*

Protein Length: 734

Fln nts: TTTTTTTGTGGGCTAATTCGATTGCCCACCAAAGCTCCGATTTAGGTGGCCGATTGCACGGTTCCCTGTTCCCCGTCTGCAATCGACGAAGCAGCCACGATCTCCGTTGGACTCCAGATACTACTTCATCTTCATAAATTTACATATGAGAGCCTTTGGACAAGTTAAGCAATTATCCATTAGCAGATTCAAGGTTGATTGAACTTGTGCATCAAC_-_ATGTCTTTCCGTGATACTGGTATAAAGGTTCAGGTTATGGATGGTGAAAGAGAGAAATTTGTGAGGTTTGAAAGTGATTTAGGATCTCAGCAATCTCTGGAATCAGATAGGAAGGGACTGGGTAAATATAGTTTCAGTTTGGAAAGTTTTGAACGAACACCAAGCTCTATATCTTCTTCTGTGAGAAGAGGGTTTGAAAGGAGCTCAGAAGGATTGAAGAATATTGGTCGGTCATTGCGTTTTGGAGTTTCAAAAGAAGTATTTACTGAGGACCTCAAGTCCTCTGAAAAAGTAGTATTTAACCCTCAAGATAAGTTCTTCCAGAGATGGAATAAAATCTTTGTTCTAACATGCCTTGCAGCAATATCAGTGGATCCCTTATTCTTTTATCTTCCAGTCATTGATAAGAAATCAGAATGCCTTGATATAGATCACAACTTAGCAATCACTGCTACTGTGCTTCGGACAATCACTGATATTTTCTACTTAATACACATGGGCCTTCAGTTTCGTACTGCCTTCATTGCTCCATCATCTAGAATCTTTGGGAGAGGGGAGCTTGTCATTGATCCTGCACAAATAGCAAAGCGCTACTTGTCAACATACTTCATAGTAGACTTTCTCGCTGTTCTGCCTCTTCCACAGGTGGTTATTTGGATTATTATGCCACACATGAGAGGCGAAGCTGCATTGAACATCAAAAATACCTTGCGGTTTATTGTCTTGTTTCAGTACTTGCCCAGATTCTTTCGCATATTCCCACTTTGCGCACAAGTTATTGGAACAACTGGTCTATTGATTGAAACTGCATGGGCAGGCGCTGCTTTCAACTTACTTCTTTATATGCTTGCAAGCCATGTTCTTGGAGCTTGTTGGTATTTACTTGCATTGGAACGGCATGACACATGTCGGCGAAAGGCTTGTGCAAATAATGAAAGCCATTGTGAACTAGCATCTTTATATTGCAACGAGAAAAATACTTTGTCTAATCAATCCATAGAATTTCTAAATAACTATTGTAATACATCTGATACAAATGAAAATTTCAATTTTGGAATTTATGGTGATGCACTTGATTATGGAATCATTTCATCAAGAAAGTTTTTGGAGAAGTATTTCTATTGCTTATGGTGGGGCCTACAAAACCTAAGCTCACTTGGGCAGAATCTACAAACAAGCACTTATGTTTGGGAGATCGGTTTTGCTATGTTCATTGCCATCATTGGCTTGGTTCTATTTGCCCTTCTTATTGGAAACATGCAGACCTATTTGCAGTCTTCAACCACAAGGCTAGAAGAAATGCGAATAAAGCGGCGTGATACAGAGCAATGGATGCATCATCGTTTACTTCCAGAAAACCTGCAGAAATGTGTTCGTCGGTATGACCAGTATAAATGGCTGGAAACAAGAGGAGTGGATGAAGAGAACTTGATTCAGAACCTTCCAAAGGATCTGAGACGTGATATAAAACGTCATCTCTGCTTAGATTTGGTCAGGAGGGTACCTTTGTTTGAGAGTATGGATGATCAGTTGTTGGATGCAATGTGTGAACGTCTCAAGCCAGCACTTTATACCGAGCAGACATATATTGTCAGAGAGGGGGATCCAGTTGATATGATGCTTTTCATTATTCGTGGTCGTTTGGAAAGTGCAACAACAAATGGAGGAAGAACTGGATTTTTTAATAGTGGTGTTCTTCAACAAGGAGGTTTCTGTGGTGAAGAACTGCTGACATGGGCTTTAGATCCCAAGTCTGGTGCAAATCTTCCATCTTCTACCAGAACTGTAAAATCTCTGATTGAGGTAGAAGCATTTGCTTTAAGAGCAGAGGATTTGAAGTTTGTTGCAACTCAATTCAGACGTCTGCATAGCCGACAGGTTCAGCATACTTTTCGTTTCTACTCCCAACAGTGGCAAACATGGGCTGCTTGTTTCATCCAAGCAGCATGGCGTCGTTACTATAAAAAGAAAAATGAATATCTTCTCCATAAAGAGGAAAACAAATTTCGGGTAGCCCTGTCAGGGAGCAATGGCAATGCTTCTCCCAGTCTTGGAGCAACTATATATGCATCTCGGTTTGCAGCTAATGCCCTTCGTGCTCACAGACAACGAAATATGGAACGTCCAGCAAGGACCACCCCACTGATTAAGCTCCAAAAGCCAGCAGAACCAGATTTCACTGCTGAAGATTCTGAATGA___TAATTAAGAAAATACCACAACTGAATCTTTCTTACATCTGCTAGTTAAAACATAAACTGCCTCACTATCATCAAAACAAACTTAGGACAGATTAGGGATCTTCCCTCGTACTTACAAAAGTTCAGGTTTGCATGAAATGTGCAAGGTTGAAGAAATAGTTTCTTCTTCAATGTTTCAGGTTATTAATTTGTACAGTCCCATGCATTATATCTGGTTGATGATCAACCTATTGCAATCAATCCCATGTACAGAAGTTAGTTTGTGATTCTATTTATAAATTATAATGTGTGCTTGTTATGATCAAGTTACTGATAAACTATATGTGGGTGTCGCTGAAGTTCCTCTATAATTTTTTATGTCACAAAGCTGAAGCTAGATGCCTTGCTACCTGATGTCAAAAACATGTGGTGATGCACACCACTGCCAATATACAAAATATCGTCAGAATTTTTGGGAAATTGTTGAACGTTGTAGTAATGATCACGTTATACAATAATAAACTTAATTACC

Fln Alignment:

Contig7397___MDGEREKFVRFESDLGSQQSLESDRKGLGKYSFSLESFERTPSSISSSVRRGFERSSEGLKNIGRSLRFGVSKEVFTEDLKSSEKVVFNPQDKFFQRWNKIFVLTCLAAISVDPLFFYLPVIDKKSECLDIDHNLAITATVLRTITDIFYLIHMGLQFRTAFIAPSSRIFGRGELVIDPAQIAKRYLSTYFIVDFLAVLPLPQVVIWIIMPHMRGEAALNIKNTLRFIVLFQYLPRFFRIFPLCAQVIGTTGLLIETAWAGAAFNLLLYMLASHVLGACWYLLALERHDTCRRKACANNESHCELASLYCNEKNTLSNQSIEFLNNYCNTSDTNEN-FNFGIYGDALDYGIISSRKFLEKYFYCLWWXXXXXXXXXXXXXXXXYVWEIGFAMFIAIIGLVLFALLIGNMQTYLQSSTTRLEEMRIKRRDTEQWMHHRLLPENLQKCVRRYDQYKWLETRGVDEENLIQNLPKDLRRDIKRHLCLDLVRRVPLFESMDDQLLDAMCERLKPALYTEQTYIVREGDPVDMMLFIIRGRLESATTNGGRTGFFNSGVLQQGGFCGEELLTWALDPKSGANLPSSTRTVKSLIEVEAFALRAEDLKFVATQFRRLHSRQVQHTFRFYSQQWQTWAACFIQAAWRRYYKKKNEYLLHKEENKFRVALSGSNGNASPSLGATIYASRFAANALRAHRQ----RNMERPARTTPLIKLQKPAEPDFTAED
O65717______________MNFRQEKFVRFQDWKSDKTS--SDVEYSGKNEIQTGIFQRTISSISDKFYRSFESSSARIKLFKRSYKSYSFKEAVSKGIGSTHKIL-DPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNA---FLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFAANILRTIRRSGSVRKPRMPERMPPML-LQKPAEPDFNSDD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
2104	12			87	0.992554
2105	87			12	0.992554
2106		87	12		0.992554
2200	14			85	0.993533
2203		83		16	0.994512
2438	16			83	0.994512
2439		16	83		0.994512
2441	83			16	0.994512
2711		10		90	0.90298
2718	25	12			1.0
2720	66			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain