SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7384

Length: 3570 nt

UniGene Fasta

>sp_v3.0_unigene7384
ATGGGGATTCTAAAAGTGAGTTAGAAAAGTGTTTTCTTTTGGTCTCTCGGCTTTGCACAGAATGTTGAACTCAACGAAGGCCATCACGCTCAAGCCCGCTCCCAGTCTTCACAGTTGCAAATTCAGAGCACAGGGATCGCCGCCATTGCTTCACTGGGCGGGCTTCAATGGCTTGCTTTCGAACCCTTCCAACTATGGCGGATCGACCAAATTGTCAGTATCCTGCATGGCTCTCAAGAACATATTTGGCGGTGCCGCTGGCTCCAAATCGTCAAAGACGGAGAAGAAGCCCCGTAAAGCCTCTGTTCCTCTGCCTGCAACTGTGACTGTCGATAACGAATCTTCGGACGAATACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTGTGCTTCAGATTATCACCAGGGTTCTTAGAGCCATGGGGGTTCAAATCTCGAAGGCAAATGTAAATTTGGACAAAGGCTCTGTTGTTGAGAAAGTTTTTGTGACCGATTCCGAGGGCAGTAAAATAAATGATCCACAGAGCTTGGACAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATAACCCCATAAGGGTCGTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCCCAGTCGAGAGATCTTGATTTCGAAAGTTCTGATCAAGTGAAGGCTAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTATGTGAAAAATGATGTTGTGAGCATTCAAAAGGATGTCCTAGATCACGTGGAGTATACGGTTGCGGGCTCGCGGTTCAACTTTAGCGATTTTGAAGCGTACCAGGCCACAGCACATAGTGTGCGAGACCGTTTAATTGAAAGTTGGAATGACACTCATCAGTATTTCAGGGAAAATAATCCAAAGCGGTTGTTTTTCCTATCCCTCGAGTTTCTTATGGGACGGTCATTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATGCTGAAGCTTTGAAGCAACTTGGCTTTGACTTGGAAACACTGGCGGAGCAGGAAGGAGATGCAGCTCTTGGTAATGGAGGGCTTGCTCGACTCTCAGCATGTCTGATGGAGTCACTTGCAACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAACAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATAACCTATCCAGTAAAGTTTTATGGTAAAGTGGAGGAGGTTGTTCACAATGGAAAAAGGCAAAAAAGATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCGGGGTATGGTACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCCAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAGACCATAAGCAGTGTTCTACTGCCAGACGACCGTTCTTATCAGGGTAAGGAACTTCATCTGAAGCAGCAATACTTCTTTGTCTCAGCTTCTTTACAAGACATTATGCGGAGATTCAAAGGCTTTCATATCAATATTGATGATTTTCCTCAAAAGGTAGCATTACAGCTCAACGATACACAACCTTCACTTGCGGTACCTGAGTTAATGAGGATGCTGGTAGATGAGGAAAATTTAGAATGGAGCAGAGCATGGGAAATTGTGAAGAAAGTATTTTCCTTTACAAATCACACAGTTCATACTGAAGCTTTGGAGAAAATACCTGTTGAGCTGTTAGGAAGTGTTCTGCCACGGCATTTACAAATCATATACGATATAAATTATTTCTTCTTGGAGGATCTGAGAAAACGTATGGGATCAGACTATGCTCGCCTTTCTCGAATGTCAATAATTGAAGAAGGTGCTGTGAAGTGTGTCCGCATGGCAACGCTATCCATTGTAGCCTGCCATAATGTGATTGGTGTATCCCAAGTCCACTCAGAAATACTTCAGACAAAAGTTTTCGCGGACTTCTATGACATTTGGCCACATAAGTTTCAATCTCAATCAAATGGTGTTAGTCAGCGACGATGGCTGGCAGTCAGTAATCCTGGTCTACGGGATGTTATCACAAAGTGGCTTGGTACACAAGCATGGATTAAAGACTTGGACCTTTTATGTGGCTTACGTGACCATGCAGACAATCCAGAACTGCAAAATGAGTGGAGAAAGGTTCATCGAATGAACAAAAGTAGATTAGCTCAATATATAGAAGGAATAAGTGGCTTAAAGGTTAGTGTTGATGCAATGTTTGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATATACTGAGCATTATCCACCGATATGACTGTATAAAGAATATGACTAGCGAGGAGAGAAAAAAAGTTGTGCCGCGGGTATGCCTTATTGGAGGAAAGGCAGCTCCAGGATACGAGATTGCAAAAAAAAATAATAAAACTCATACATGCAGTTGCTGGGAAGATTAACAATGATCCAGACATTGGGAACCTTTTGAAATTGGTATTTGTTCCAGATTACAATGTGTCTGTAGCTGAACTGATAATACCTGCAAGCGATGTATCTCAGCACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAACATGAAATTTCTAATGAATGGCTGTCTTATTCTCGGGACCCTGGATGGAGCAGCTGTTGAAATAGCAGAAGAAATAGGAGAGGAGAATATGTTTATATTTGGTGCTAAAATACATGAAGTTCCGAAACTTCGAGCTCAAAGGCATGATTTTCAGCCACCTCGTGAATTTAGGCGTGTCATTAGGATGATTCGGGATGGCTATTTTGGCTTCAAAGATTATTTTAAATCATTATGTGACACAGTCGATGGTGAAGGTGGAGATTTCTATCTGCTGGGAAATGACTTTGCAAGCTATTTAGAAGCGCAGGCAGCAGTAGATAGGACATATGTTGACAAAGAAAAATGGACACGCATGAGTATTCTTGGCACCGCTGGTTCAGGGAAATTCAGCAGTGACCGAACAATTAGAGAATATGCTGAACAGGCTTGGGGTATTGAGCCTTGCAAGCGGCCATGTTAGAAAAAATTGTAGTGGATGACTCTCTCCTGTTGTTTGATGGTCAAATTAGACATTATGCAAAGAATCTTGTTTCAACTGTTTAACCCGCCTCATCGCGTAAGATCATTCACTTTCACAATTTTGCTAATCTTTATACATATTTCATTGTAAAGTCGTGATCATTTGGATTATTAGGCTATTTCAACAGTGTTCCTTCAGTGTCATATGTACACCTGAGAAGGATATGCTTGTGGCTGGTGTTAAACTGAACATCTTGTCTTGTCTTACGAGCCTTAAATGTGTGGCTCTGGAGAAGAGGAGCCAATTATGAATTTGAGTTAATTGAGCCTTCTAATCATGCAAGAGGACGTCTCATCTAGCTATAATATAGTTTACCGCAATTATTTACACTAGTGTACTCTGTTTTACTTGGATTTCGTAGGGTTGTTAA

Ace file of the UniGene sp_v3.0_unigene7384

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphorylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TJD7_VITVI	-	-	74%
FL-Next	sp=Phosphorylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Sma3	Phosphorylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphorylase.	EC:2.4.1.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At3g29320; At3g46970; CHLREDRAFT_137300; CHLREDRAFT_152708; CmPhoH1; CmPhoL1; F13I12.20; GSVIVT00003051001; GSVIVT00021049001; GSVIVT00024166001; GSVIVT00030064001; LOC_Os03g55090; MICPUCDRAFT_35182; MICPUCDRAFT_35264; MICPUCDRAFT_49649; MICPUN_104969; MI

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	phosphorylase activity	GO:0004645	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	response to temperature stimulus	GO:0009266	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Glycogen/starch/alpha-glucan phosphorylase	IPR011833	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G46970.1	ATPHS2, PHS2 alpha-glucan phosphorylase 2 chr3:17301625-17306111 REVERSE LENGTH=841	49%
RefSeq	Arabidopsis thaliana	NP_190281.1	alpha-glucan phosphorylase isozyme H [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002305114.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUV6

Fln msg: Overlapping hits, possible frame ERROR between 2500 and 2496, your sequence is longer than subject: 1027 - 399

Fln protein: MLNSTKAITLKPAPSLHSCKFRAQGSPPLLHWAGFNGLLSNPSNYGGSTKLSVSCMALKNIFGGAAGSKSSKTEKKPRKASVPLPATVTVDNESSDEYTILIITAENRTAVLQIITRVLRAMGVQISKANVNLDKGSVVEKVFVTDSEGSKINDPQSLDNIQQALREALNNPIRVVDPKTRGLVIKPQSRDLDFESSDQVKARAEVLFNLMDQYVKNDVVSIQKDVLDHVEYTVAGSRFNFSDFEAYQATAHSVRDRLIESWNDTHQYFRENNPKRLFFLSLEFLMGRSLSNSIYNLGIKDQYAEALKQLGFDLETLAEQEGDAALGNGGLARLSACLMESLATLDLPAWGYGLRYQYGLFRQVIIDGFQREQPDYWLNFGNPWEIERAHITYPVKFYGKVEEVVHNGKRQKRWIPGEMVEAVAYDNPIPGYGTGNTINLRLWAAKPSGESDLESFNTGDYINAIINKQRAETISSVLLPDDRSYQGKELHLKQQYFFVSASLQDIMRRFKGFHINIDDFPQKVALQLNDTQPSLAVPELMRMLVDEENLEWSRAWEIVKKVFSFTNHTVHTEALEKIPVELLGSVLPRHLQIIYDINYFFLEDLRKRMGSDYARLSRMSIIEEGAVKCVRMATLSIVACHNVIGVSQVHSEILQTKVFADFYDIWPHKFQSQSNGVSQRRWLAVSNPGLRDVITKWLGTQAWIKDLDLLCGLRDHADNPELQNEWRKVHRMNKSRLAQYIEGISGLKVSVDAMFDVQVKRIHEYKRQYLNILSIIHRYDCIKNMTSEERKKVVPRVCLIGGKAAPGYEIAxxxIIKLIHAVAGKINNDPDIGNLLKLVFVPDYNVSVAELIIPASDVSQHISTAGHEASGTSNMKFLMNGCLILGTLDGAAVEIAEEIGEENMFIFGAKIHEVPKLRAQRHDFQPPREFRRVIRMIRDGYFGFKDYFKSLCDTVDGEGGDFYLLGNDFASYLEAQAAVDRTYVDKEKWTRMSILGTAGSGKFSSDRTIREYAEQAWGIEPCKRPC*

Protein Length: 1028

Fln nts: ATGGGGATTCTAAAAGTGAGTTAGAAAAGTGTTTTCTTTTGGTCTCTCGGCTTTGCACAGA_-_ATGTTGAACTCAACGAAGGCCATCACGCTCAAGCCCGCTCCCAGTCTTCACAGTTGCAAATTCAGAGCACAGGGATCGCCGCCATTGCTTCACTGGGCGGGCTTCAATGGCTTGCTTTCGAACCCTTCCAACTATGGCGGATCGACCAAATTGTCAGTATCCTGCATGGCTCTCAAGAACATATTTGGCGGTGCCGCTGGCTCCAAATCGTCAAAGACGGAGAAGAAGCCCCGTAAAGCCTCTGTTCCTCTGCCTGCAACTGTGACTGTCGATAACGAATCTTCGGACGAATACACGATCCTCATTATCACGGCAGAGAACAGAACGGCTGTGCTTCAGATTATCACCAGGGTTCTTAGAGCCATGGGGGTTCAAATCTCGAAGGCAAATGTAAATTTGGACAAAGGCTCTGTTGTTGAGAAAGTTTTTGTGACCGATTCCGAGGGCAGTAAAATAAATGATCCACAGAGCTTGGACAATATTCAGCAAGCTCTCAGGGAAGCCTTGAATAACCCCATAAGGGTCGTGGATCCCAAGACGAGAGGGTTAGTTATAAAGCCCCAGTCGAGAGATCTTGATTTCGAAAGTTCTGATCAAGTGAAGGCTAGGGCGGAGGTGCTGTTCAATTTGATGGACCAGTATGTGAAAAATGATGTTGTGAGCATTCAAAAGGATGTCCTAGATCACGTGGAGTATACGGTTGCGGGCTCGCGGTTCAACTTTAGCGATTTTGAAGCGTACCAGGCCACAGCACATAGTGTGCGAGACCGTTTAATTGAAAGTTGGAATGACACTCATCAGTATTTCAGGGAAAATAATCCAAAGCGGTTGTTTTTCCTATCCCTCGAGTTTCTTATGGGACGGTCATTATCAAACAGCATTTACAATCTTGGCATAAAGGACCAATATGCTGAAGCTTTGAAGCAACTTGGCTTTGACTTGGAAACACTGGCGGAGCAGGAAGGAGATGCAGCTCTTGGTAATGGAGGGCTTGCTCGACTCTCAGCATGTCTGATGGAGTCACTTGCAACTCTGGACTTACCGGCCTGGGGATATGGATTGCGTTATCAGTATGGGTTGTTTAGGCAGGTGATAATTGATGGGTTTCAGCGTGAACAACCAGATTATTGGCTGAATTTTGGTAATCCTTGGGAGATTGAGCGTGCTCATATAACCTATCCAGTAAAGTTTTATGGTAAAGTGGAGGAGGTTGTTCACAATGGAAAAAGGCAAAAAAGATGGATTCCAGGAGAGATGGTAGAAGCTGTTGCATATGATAACCCCATTCCGGGGTATGGTACTGGAAATACAATCAACCTTCGGCTTTGGGCAGCCAAACCCAGTGGTGAATCTGATCTGGAATCATTTAATACAGGAGACTATATCAATGCTATAATCAACAAACAACGAGCTGAGACCATAAGCAGTGTTCTACTGCCAGACGACCGTTCTTATCAGGGTAAGGAACTTCATCTGAAGCAGCAATACTTCTTTGTCTCAGCTTCTTTACAAGACATTATGCGGAGATTCAAAGGCTTTCATATCAATATTGATGATTTTCCTCAAAAGGTAGCATTACAGCTCAACGATACACAACCTTCACTTGCGGTACCTGAGTTAATGAGGATGCTGGTAGATGAGGAAAATTTAGAATGGAGCAGAGCATGGGAAATTGTGAAGAAAGTATTTTCCTTTACAAATCACACAGTTCATACTGAAGCTTTGGAGAAAATACCTGTTGAGCTGTTAGGAAGTGTTCTGCCACGGCATTTACAAATCATATACGATATAAATTATTTCTTCTTGGAGGATCTGAGAAAACGTATGGGATCAGACTATGCTCGCCTTTCTCGAATGTCAATAATTGAAGAAGGTGCTGTGAAGTGTGTCCGCATGGCAACGCTATCCATTGTAGCCTGCCATAATGTGATTGGTGTATCCCAAGTCCACTCAGAAATACTTCAGACAAAAGTTTTCGCGGACTTCTATGACATTTGGCCACATAAGTTTCAATCTCAATCAAATGGTGTTAGTCAGCGACGATGGCTGGCAGTCAGTAATCCTGGTCTACGGGATGTTATCACAAAGTGGCTTGGTACACAAGCATGGATTAAAGACTTGGACCTTTTATGTGGCTTACGTGACCATGCAGACAATCCAGAACTGCAAAATGAGTGGAGAAAGGTTCATCGAATGAACAAAAGTAGATTAGCTCAATATATAGAAGGAATAAGTGGCTTAAAGGTTAGTGTTGATGCAATGTTTGATGTGCAAGTCAAGCGTATCCATGAGTACAAAAGACAATATCTCAATATACTGAGCATTATCCACCGATATGACTGTATAAAGAATATGACTAGCGAGGAGAGAAAAAAAGTTGTGCCGCGGGTATGCCTTATTGGAGGAAAGGCAGCTCCAGGATACGAGATTGCAxxxxxxxxxATAATAAAACTCATACATGCAGTTGCTGGGAAGATTAACAATGATCCAGACATTGGGAACCTTTTGAAATTGGTATTTGTTCCAGATTACAATGTGTCTGTAGCTGAACTGATAATACCTGCAAGCGATGTATCTCAGCACATCAGCACGGCTGGACATGAAGCATCAGGAACAAGCAACATGAAATTTCTAATGAATGGCTGTCTTATTCTCGGGACCCTGGATGGAGCAGCTGTTGAAATAGCAGAAGAAATAGGAGAGGAGAATATGTTTATATTTGGTGCTAAAATACATGAAGTTCCGAAACTTCGAGCTCAAAGGCATGATTTTCAGCCACCTCGTGAATTTAGGCGTGTCATTAGGATGATTCGGGATGGCTATTTTGGCTTCAAAGATTATTTTAAATCATTATGTGACACAGTCGATGGTGAAGGTGGAGATTTCTATCTGCTGGGAAATGACTTTGCAAGCTATTTAGAAGCGCAGGCAGCAGTAGATAGGACATATGTTGACAAAGAAAAATGGACACGCATGAGTATTCTTGGCACCGCTGGTTCAGGGAAATTCAGCAGTGACCGAACAATTAGAGAATATGCTGAACAGGCTTGGGGTATTGAGCCTTGCAAGCGGCCATGTTAG___AAAAAATTGTAGTGGATGACTCTCTCCTGTTGTTTGATGGTCAAATTAGACATTATGCAAAGAATCTTGTTTCAACTGTTTAACCCGCCTCATCGCGTAAGATCATTCACTTTCACAATTTTGCTAATCTTTATACATATTTCATTGTAAAGTCGTGATCATTTGGATTATTAGGCTATTTCAACAGTGTTCCTTCAGTGTCATATGTACACCTGAGAAGGATATGCTTGTGGCTGGTGTTAAACTGAACATCTTGTCTTGTCTTACGAGCCTTAAATGTGTGGCTCTGGAGAAGAGGAGCCAATTATGAATTTGAGTTAATTGAGCCTTCTAATCATGCAAGAGGACGTCTCATCTAGCTATAATATAGTTTACCGCAATTATTTACACTAGTGTACTCTGTTTTACTTGGATTTCGTAGGGTTGTTAA

Fln Alignment:

Contig7384___MATLSIVACHNVIGVSQVHSEILQTKVFADFYDIWPHKFQSQSNGVSQRRWLAVSNPGLRDVITKWLGTQAWIKDLDLLCGLRDHADNPELQNEWRKVHRMNKSRLAQYIEGISGLKVSVDAMFDVQVKRIHEYKRQYLNILSIIHRYDCIKNMTSEERK-KVVPRVCLIGGKAAPGYEIAxxIIKLIHAVAGKINNDPDIGNLLKLVFVPDYNVSVAELIIPASDVSQHISTAGHEASGTSNMKFLMNGCLILGTLDXXXXXXXXXXXXXNMFIFGAKIHEVPKLRAQRHD--FQPPREFRRVIRMIRDGYFGFKDYFKSLCDTVDG-EG---GDFYLLGNDFASYLEAQAAVDRTYVDKEKWTRMSILGTAGSGKFSSDRTIREYAEQAWGIEPCKRP
A9NUV6______________MANICVIAGHSVNGVAEIHSEIVKKEVFSDFYEMWPEKFQNKTNGVTPRRWIRFCNPELSKVITKWLGTEDWVLKTELLAELRKFADNVDLQEEWRAAKRANKLKLVSYIREKTGYIISPDAMFDVQVKRIHEYKRQLLNILGVIYRYKKMKEMTPEERRAKFVPRVCIFGGKAFATYVQAxxIVKLITDVGVTINHDTEIGDLLKIVFIPDYNVSVAETLIPASELSQHISTAGMEASGTSNMKFSMNGCVLIGTLDGANVEIREEVGEENFFLFGARAHEIAGLRKERAEGKFKPDPRFEEAKDYIKSGVFGKYDY-RPLIDSLEGNEGYGRGDYFLVGKDFPAYVECQERVDAAYGDQEKWTRMSILNTAGSYKFSSDRTIHEYAKDIWGVKQVKLP

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1038	16	83			0.994512
1040			16	83	0.994512
1094	16			83	0.994512
1317		33	66		0.997452
1320			66	33	0.997452
1463	66		33		0.997452
1672	60		40		1.0
1694	16	83			0.994512
1699	80		20		0.995493
1968	20		80		0.995493
2044		75		25	0.996473
2087	40			60	1.0
2170	25		75		0.996473
2356		20		80	0.995493
2448		20		80	0.995493
2500		66		33	0.997452
2625		80		20	0.995493
2626		80	20		0.995493
2627			20	80	0.995493
3478		9		90	0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain