SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7375

Length: 1965 nt

UniGene Fasta

>sp_v3.0_unigene7375
CGTCGTGACCTTGGCTGTCACTCAAGTTTTTTTTGTACCGGAACAAGACCAAGACGTGCATCCCTATCAAGAGTTTCTGCGCTACCTGGGTTCAAAACATCGTGCTGGTGTTGCAAAATTTAGCGATGGGACAACACTGTTTTTGGTGCCTCCCTCTGACTTTTCAGAGCATGTTCTGAAGGCCCCTCGCGGCAATCATCTCTTTGGGGTCGTTCTCAAGTTTCTACAGCAATCAGGCAGTGTTATGCAGCCAAATCCATCTCAGACAAATTTACATGATCCTCTGCAACAGCTTTATGTTCAAAGCGAGCAGTTTCCTATCTCACATGTGGGCTACACTCAAATGCCCATAAAAGGGGATCCAACAATATGTGCAACAGGCATGCCAAGGTCACTTTCACCTCCAGAGGATATGCACAGTGGACAAACTGGTGTTCCAGAAAGGATAAATCAGATACCAGGCTCACAATCAGCTGCCATTTCTTTAACACCTGAGCTGATTGCTACATTAACATCCCTTCTTCCCAACACCTTTCAAGCTTCCAGTTCAGGTGGCTCAGCTGCAGTTCCAAACACTTCCACAAGGCATGATCCGTGTGAATCTAGTGGTGGTTATGATGCCTCTGACAATAGAAGGCTGGGTTCTTCACCTAGATCATCAGAACTGTGGAGGCAGCATCAGCAACCACTACCTTTGACTTCACATATACCAAGACAAGAACACGACTCTGAACAGCACCATCGCCAAAATAATAGTCAAACATCCTTTCTTCATCTTGCTGCAGGTTCTCTATCAAACTCCGATAGTACACTTGAACACAGTGTTCATGGGGCTGCAGTCAGTCAGCTGTTCCAGGATCCCAATCAGAAGGGGCAGCAATCAAATGCGTTATCTCGAATTACTACTGGGCATGCTCAGCTGCCATCAGTTCCGGCCCAAAGCAGTGACCAACATAGTGGACAACTTACAATGCTTCATGCTAACCACAATCGTATACCAGAAGCATGTTTTAATTCTCAGGGATCTTATAGTCAGATGGTCTCGATGGAGGTATCTGAAAATATTCAATCATCAGCTTCACCGCAGCTGAAATCTGTGTCATTGAGATCACCTGAACCAGTTAAAGGAGGAGGTGGGTCTCAAACATTTCCAAATGTGCAATTAGGATCTAATGAAGGAAACCCACAACTGGCAAATCAAGTACAGCAGCTTCAGGGACTTGGGGCTTCTCTCCATGGACATGGCCAGGAAAACTCCAAAAGTGATACAGATAAGAATCAGAGGTATCAGTCAACATTGCAATTTGCAGCCAACCTTTTGATACAACTTCAACAAAAACAAGCGGCAAATAAGAATGTTATGGGAAGCTCTCAACATCAGCAATAAGGGGTCCATCTGCTACCAGTCAACCAAGGAAAAATCCATGACATGGGTTTTGTCGCCCAACATCTCGAGATGGATAGACACTTGTTCGCTTGCCTGAAATTAACCTTAAGATGCTTCGTCAACGCAGAGAACTTTAAAGAGAAAAACACAAGACAATATGATATTTTTGCCCATAGCTAATTCTAATAGATTTTCTCCATGATCTGGCGGTAGCATGATGTTGATTTGATCCATATGTAGTCCCATGATAGCGTATAGTAATCAACAAGGAGGATTTTTAGATTTTAGTTTCATTTTTGCCTATAAAAAAAGCAAATGAAGCTTGCTAAGTTTGTAATTATAGATATTGAAGAATTATTCTAGTGAGCTTGGTGTGCAAAGACTTCAACTTTGGAGCTATTTCAACTTCATTTCATATATTATATGTAACTTTCTTGAGTCCCTACCATTGATAATCTTTAGTGTGCATGCAAAGAAGTGGAGGCCCTCCACAACTTCTTCTTGTGCAACTTATTTCATTTGTTGTTCATCTTGTATATGTTGGTATATCTTGTTTATATGATTTTTTGTTATGTTTT

Ace file of the UniGene sp_v3.0_unigene7375

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO	-	-	1.99993e-41	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Putative uncharacterized protein AT4g12640	-	-	5.848e-06	-

Source	Gene names
Sma3	AT4g12640; At4g12640;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Spen paralogue and orthologue SPOC, C-terminal	IPR012921	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKJ3

Fln msg: your sequence is shorter than subject: 462 - 1019

Fln protein: VVTLAVTQVFFVPEQDQDVHPYQEFLRYLGSKHRAGVAKFSDGTTLFLVPPSDFSEHVLKAPRGNHLFGVVLKFLQQSGSVMQPNPSQTNLHDPLQQLYVQSEQFPISHVGYTQMPIKGDPTICATGMPRSLSPPEDMHSGQTGVPERINQIPGSQSAAISLTPELIATLTSLLPNTFQASSSGGSAAVPNTSTRHDPCESSGGYDASDNRRLGSSPRSSELWRQHQQPLPLTSHIPRQEHDSEQHHRQNNSQTSFLHLAAGSLSNSDSTLEHSVHGAAVSQLFQDPNQKGQQSNALSRITTGHAQLPSVPAQSSDQHSGQLTMLHANHNRIPEACFNSQGSYSQMVSMEVSENIQSSASPQLKSVSLRSPEPVKGGGGSQTFPNVQLGSNEGNPQLANQVQQLQGLGASLHGHGQENSKSDTDKNQRYQSTLQFAANLLIQLQQKQAANKNVMGSSQHQQ*

Protein Length: 463

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTTTTGTACCGGAACAAGACCAAGACGTGCATCCCTATCAAGAGTTTCTGCGCTACCTGGGTTCAAAACATCGTGCTGGTGTTGCAAAATTTAGCGATGGGACAACACTGTTTTTGGTGCCTCCCTCTGACTTTTCAGAGCATGTTCTGAAGGCCCCTCGCGGCAATCATCTCTTTGGGGTCGTTCTCAAGTTTCTACAGCAATCAGGCAGTGTTATGCAGCCAAATCCATCTCAGACAAATTTACATGATCCTCTGCAACAGCTTTATGTTCAAAGCGAGCAGTTTCCTATCTCACATGTGGGCTACACTCAAATGCCCATAAAAGGGGATCCAACAATATGTGCAACAGGCATGCCAAGGTCACTTTCACCTCCAGAGGATATGCACAGTGGACAAACTGGTGTTCCAGAAAGGATAAATCAGATACCAGGCTCACAATCAGCTGCCATTTCTTTAACACCTGAGCTGATTGCTACATTAACATCCCTTCTTCCCAACACCTTTCAAGCTTCCAGTTCAGGTGGCTCAGCTGCAGTTCCAAACACTTCCACAAGGCATGATCCGTGTGAATCTAGTGGTGGTTATGATGCCTCTGACAATAGAAGGCTGGGTTCTTCACCTAGATCATCAGAACTGTGGAGGCAGCATCAGCAACCACTACCTTTGACTTCACATATACCAAGACAAGAACACGACTCTGAACAGCACCATCGCCAAAATAATAGTCAAACATCCTTTCTTCATCTTGCTGCAGGTTCTCTATCAAACTCCGATAGTACACTTGAACACAGTGTTCATGGGGCTGCAGTCAGTCAGCTGTTCCAGGATCCCAATCAGAAGGGGCAGCAATCAAATGCGTTATCTCGAATTACTACTGGGCATGCTCAGCTGCCATCAGTTCCGGCCCAAAGCAGTGACCAACATAGTGGACAACTTACAATGCTTCATGCTAACCACAATCGTATACCAGAAGCATGTTTTAATTCTCAGGGATCTTATAGTCAGATGGTCTCGATGGAGGTATCTGAAAATATTCAATCATCAGCTTCACCGCAGCTGAAATCTGTGTCATTGAGATCACCTGAACCAGTTAAAGGAGGAGGTGGGTCTCAAACATTTCCAAATGTGCAATTAGGATCTAATGAAGGAAACCCACAACTGGCAAATCAAGTACAGCAGCTTCAGGGACTTGGGGCTTCTCTCCATGGACATGGCCAGGAAAACTCCAAAAGTGATACAGATAAGAATCAGAGGTATCAGTCAACATTGCAATTTGCAGCCAACCTTTTGATACAACTTCAACAAAAACAAGCGGCAAATAAGAATGTTATGGGAAGCTCTCAACATCAGCAATAA___GGGGTCCATCTGCTACCAGTCAACCAAGGAAAAATCCATGACATGGGTTTTGTCGCCCAACATCTCGAGATGGATAGACACTTGTTCGCTTGCCTGAAATTAACCTTAAGATGCTTCGTCAACGCAGAGAACTTTAAAGAGAAAAACACAAGACAATATGATATTTTTGCCCATAGCTAATTCTAATAGATTTTCTCCATGATCTGGCGGTAGCATGATGTTGATTTGATCCATATGTAGTCCCATGATAGCGTATAGTAATCAACAAGGAGGATTTTTAGATTTTAGTTTCATTTTTGCCTATAAAAAAAGCAAATGAAGCTTGCTAAGTTTGTAATTATAGATATTGAAGAATTATTCTAGTGAGCTTGGTGTGCAAAGACTTCAACTTTGGAGCTATTTCAACTTCATTTCATATATTATATGTAACTTTCTTGAGTCCCTACCATTGATAATCTTTAGTGTGCATGCAAAGAAGTGGAGGCCCTCCACAACTTCTTCTTGTGCAACTTATTTCATTTGTTGTTCATCTTGTATATGTTGGTATATCTTGTTTATATGATTTTTTGTTATGTTTT

Fln Alignment:

Contig7375___AVTQVFFVPEQDQDVHPYQEFLRYLGSKHRAGVAKFSDGTTLFLVPPSDFSEHVLKAPRGNHLFGVVLKFLQQSGSVMQPNPSQTNLHDPLQQLYVQSEQFPISHVGYTQMPIKGDPTI-CATGMPRSLSP-PEDMHSGQTGVPERINQIPGSQSAAISLTPELIATLTSLLPNTFQASSSGGSAA-----------VPNTSTRHDPCESSGGYDAS-----DNRRLGSSPRSSELWRQHQQPLPLT-SHIPRQEHDSEQHHRQN-----NSQTSFLHLAAGS---LSNSDSTLEHSVHGAAVSQLFQDPNQKGQQSNALSRITTGHAQLP-SVPAQSSDQH-SGQLTMLHANHNRIPEACFNSQGSYSQMVSMEVSENIQSSASPQLKSVSLRSPEPVKGGGGSQTFPNVQLGSNEGNPQLANQVQQLQGLGASLHGHGQENSKSDTDKNQRYQSTLQFAANLLIQLQQK
B8LKJ3______________SVGVVFFVPENDPDIIPYNEFMHYLGEKQRAAVAKLGEGTTLFLVPPSQFSEQVLKVPGNVSISGVILKFQQLNTSYGSPAQPSSELMNAQPQSFLH------------RAPITGGPPIHDDNSYPNPSSPFSHQRYSGQGNISLYSENFQPPNASFSSWQPH---PSSSAGPIIYQGHGSGGASSTGSYGGTMNTNVVNENRTHHPSPQNQGFASSWSSLNPERTLVSNSRAGTFVTESSSVLMSSQSEFASTQQSLTVQQQQSCTPATNVEQQFLGFPNNSSIGQSDQNQQLQRPFLPTSVSIPQLQHDHLAQLATLLGQ-RSQSAQLPVSQPVQENQQQPSPPISQALQNFSAVPQANLQVQATASMQ-----SSSSQFSYGHQLQQHTSQLSALPRGGHVNDA------ATAESQMVPDNQTQ----------NDGREESEPDPQK--RLQATLQLAAALLQQIQQQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1728		12		87	0.992554
1960	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain