SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7374

Length: 2555 nt

UniGene Fasta

>sp_v3.0_unigene7374
ATGGGGATCCAGGCGGTGAATGACAACCAAGTTCTGGTTGTCATCGGGGAGACTGGCTCCGGAAAGACCACTCAAGTGACCCAATATTTGGCAGAGGCAGGGTACACTACTAGAGGTAAGATTGGCTGTACCCAACCTCGTAGAGTGGCAGCTATGTCTGTAGCAAAAAGAGTAGCGGAGGAATTTGGATGTCGTTTAGGGGAGGAGGTTGGGTATGCCATTCGTTTCGAGGATTGCACCGGGCCAGAGACTGTGATTAAGTACATGACCGACGGTATGCTTCTAAGAGAGATTTTAGTTGATGAAGAACTATCTCAGTATTCAGTAGTCATGCTTGATGAGGCCCACGAGAGGACAATTCACACAGATGTGTTGTTTGGGCTCCTGAAGCAGTTGGTTAGACGCAGGCCTGATCTTCGGTTAATCGTCACCTCTGCCACTCTGGACGCTGAGAAATTCTCAGGATATTTCTTCAACTGCAATATATTCACTATTCCCGGGAGGACTTATCCCGTAGAGATACTGTATACCAAGCAGCCGGAGAGTGACTATTTGGATGCTGCATTGATCACGGTCATGCAGATTCACTTGACAGAACCGGAAGGTGATATTCTTCTCTTCTTAACGGGACAGGAGGAAATTGATACTGCATGTCAGATTCTCTATGAGCGAATAAAAGGACTTGGAAAGAATGTTCCTGAACTCATAATCTTGCCGGTATACAGTGCTCTTCCCAGTGAGATGCAGTCAAGAATTTTTGAGCCGGCTCCTCCGGGTAAGAGAAAAGTGGTTGTGGCCACCAATATCGCAGAAGCTTCTTTGACCATTGATGGAATCTACTATGTTGTTGATCCTGGCTTTGCTAAGCAGAATGTATACAATCCAAAACTTGGTCTGGATTCGCTGGTCATTACACCAATTTCTCAAGCATCGGCTAAGCAACGTGCTGGACGTGCTGGTCGTACAGGTCCTGGTAAGTGCTATCGGCTATACACAGAAAGTGCATATCGCAATGAGATGCTGCCCACCACTGTGCCAGAAATACAGAGGATTAATCTTGGACTCACGACACTCAACATGAAAGCCATGGGGATCAATGACCTCCTCTCCTTTGATTTTATGGACCCCCCTCCTCCTCAAGCACTCATATCTGCAATGGAACAGCTGTATAGTTTAGGAGCTTTGGATGAGGAGGGTCTTCTAACCAAATTGGGGAGGAAAATGGCTGAATTTCCACTGGAACCTCCTTTGTCAAAGATGCTCCTTGCCAGCGTTGATCTTGGCTGTAGCGATGAGATCTTGACCATAATAGCAATGCTTCAGACACAGAACATTTTCTACAGGCCTCGAGAGAAGCAAGCTCAGGCTGACCAAAAAAGGGCAAAGTTTTTCCAACCAGAAGGGGACCACTTAACATTATTAGCCGTGTATGAGGCCTGGAAGGCAAAAAACTTCTCAGGTCCCTGGTGTTTTGAAAATTTTGTGCAATCCCGCTCTTTAAGGAGAGCCCAGGATGTGAGAAAGCAATTGCTGACCATTATGGACAGGTATAAGCTGGACGTTATCAGTGCTGGAAAGAACTTTACTAAGATTAGGAAGGCCATTGCCGCAGGATTCTTCTTTCATGCAGCTCGGAAGGATCCTCAGGAAGGATATCGAACTCTTGTTGAGAATCAACCAGTCTATATCCATCCTAGTAGTGCCCTGTTCCAAAGACAGCCTGACTGGGTGATCTATTATGAACTTGTAATGACCACCAAAGAGTACATGCGGGAAGTAACTGTTGTTGATCCAAAATGGTTGGTAGAATTGGCACCAAGGTTCTTCAAGGTAGCTGATCCTACAAAACTAAGCAAGCGCAAGCGGCAGGAGCGCATTGAGCCTCTTTATGACCGTTATCATGAACCCAACTCATGGCGTCTTAGCAAGCGTCGTGCCTGAAGGAGTATTATTTATAAAATATGTATTCTTTTGGAGGCACAATTTGTCTTTAACATACATGTTTCTTGAATGGTCTGGGAGTAGCAGCATCTTGGAGAACAAAATTTGCAGTAACGTTTTGGAACTACTTTTAGTTCTTGGAGGAGCATTTTGGAACTCCTAGCAGCAAGGTGGTTGCTTGGAATTGTGGAGAGACAAGTTGAAACTCAAGCTTCAAAGGCAGAATGAATCACACTTCTTCTGATGATAAGAGTGAAAGGGGAAAAGGCCAAATTGGAGAAATAGGAACCTGGCAGTGGATCTTCATGTTCATGTTAAGCTGTCTATTAAGGGTAAAGAGTAATTGTAACGTGGCAAAATCACTTTTGTGATCTACAGTTAGAATAACAGGAAATAAAGCTAGAACCAATAGTGGGTCACAAATGTCTACGCTATTCTCACAATGATTATAATTTTGAGGATTTTGCTAGAGTGATTTTACAGTTTGTTCATCATTATCCATGGGATAGGTTATGTCCAAATATCACTTGGCATTTTGAGTTTGGCTGAATGCAAAATTGAAAATCTGACTTGGATGAGAAAATTGAAACATCCAAAGGAAATCTAAAACGTGA

Ace file of the UniGene sp_v3.0_unigene7374

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO	-	-	0.0	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	ATP-dependent RNA helicase, putative	-	-	7.311e-24	-

Source	Gene names
Sma3	AT4g16680; AT4g18460; ATH1; At1g27900; At1g27900/F13K9.28; At1g32490; At2g35340; At2g47250; At3g26560; At3g62310; At5g13010; At5g14900; CHLREDRAFT_120088; CHLREDRAFT_127996; CHLREDRAFT_132956; CHLREDRAFT_185922; F13K9.28; F28J12.120; F28L5.6; F2G14_20; F5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26560.1	ATP-dependent RNA helicase, putative chr3:9750122-9753719 REVERSE LENGTH=1168	93%
RefSeq	Arabidopsis thaliana	NP_189288.1	ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002331832.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 37 aas, putative chimeric sequence, your sequence is longer than subject: 647 - 348

Fln protein: MGIQAVNDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDEELSQYSVVMLDEAHERTIHTDVLFGLLKQLVRRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTYPVEILYTKQPESDYLDAALITVMQIHLTEPEGDILLFLTGQEEIDTACQILYERIKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKLGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMLPTTVPEIQRINLGLTTLNMKAMGINDLLSFDFMDPPPPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMLQTQNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVISAGKNFTKIRKAIAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYYELVMTTKEYMREVTVVDPKWLVELAPRFFKVADPTKLSKRKRQERIEPLYDRYHEPNSWRLSKRRA*

Protein Length: 648

Fln nts: _-_ATGGGGATCCAGGCGGTGAATGACAACCAAGTTCTGGTTGTCATCGGGGAGACTGGCTCCGGAAAGACCACTCAAGTGACCCAATATTTGGCAGAGGCAGGGTACACTACTAGAGGTAAGATTGGCTGTACCCAACCTCGTAGAGTGGCAGCTATGTCTGTAGCAAAAAGAGTAGCGGAGGAATTTGGATGTCGTTTAGGGGAGGAGGTTGGGTATGCCATTCGTTTCGAGGATTGCACCGGGCCAGAGACTGTGATTAAGTACATGACCGACGGTATGCTTCTAAGAGAGATTTTAGTTGATGAAGAACTATCTCAGTATTCAGTAGTCATGCTTGATGAGGCCCACGAGAGGACAATTCACACAGATGTGTTGTTTGGGCTCCTGAAGCAGTTGGTTAGACGCAGGCCTGATCTTCGGTTAATCGTCACCTCTGCCACTCTGGACGCTGAGAAATTCTCAGGATATTTCTTCAACTGCAATATATTCACTATTCCCGGGAGGACTTATCCCGTAGAGATACTGTATACCAAGCAGCCGGAGAGTGACTATTTGGATGCTGCATTGATCACGGTCATGCAGATTCACTTGACAGAACCGGAAGGTGATATTCTTCTCTTCTTAACGGGACAGGAGGAAATTGATACTGCATGTCAGATTCTCTATGAGCGAATAAAAGGACTTGGAAAGAATGTTCCTGAACTCATAATCTTGCCGGTATACAGTGCTCTTCCCAGTGAGATGCAGTCAAGAATTTTTGAGCCGGCTCCTCCGGGTAAGAGAAAAGTGGTTGTGGCCACCAATATCGCAGAAGCTTCTTTGACCATTGATGGAATCTACTATGTTGTTGATCCTGGCTTTGCTAAGCAGAATGTATACAATCCAAAACTTGGTCTGGATTCGCTGGTCATTACACCAATTTCTCAAGCATCGGCTAAGCAACGTGCTGGACGTGCTGGTCGTACAGGTCCTGGTAAGTGCTATCGGCTATACACAGAAAGTGCATATCGCAATGAGATGCTGCCCACCACTGTGCCAGAAATACAGAGGATTAATCTTGGACTCACGACACTCAACATGAAAGCCATGGGGATCAATGACCTCCTCTCCTTTGATTTTATGGACCCCCCTCCTCCTCAAGCACTCATATCTGCAATGGAACAGCTGTATAGTTTAGGAGCTTTGGATGAGGAGGGTCTTCTAACCAAATTGGGGAGGAAAATGGCTGAATTTCCACTGGAACCTCCTTTGTCAAAGATGCTCCTTGCCAGCGTTGATCTTGGCTGTAGCGATGAGATCTTGACCATAATAGCAATGCTTCAGACACAGAACATTTTCTACAGGCCTCGAGAGAAGCAAGCTCAGGCTGACCAAAAAAGGGCAAAGTTTTTCCAACCAGAAGGGGACCACTTAACATTATTAGCCGTGTATGAGGCCTGGAAGGCAAAAAACTTCTCAGGTCCCTGGTGTTTTGAAAATTTTGTGCAATCCCGCTCTTTAAGGAGAGCCCAGGATGTGAGAAAGCAATTGCTGACCATTATGGACAGGTATAAGCTGGACGTTATCAGTGCTGGAAAGAACTTTACTAAGATTAGGAAGGCCATTGCCGCAGGATTCTTCTTTCATGCAGCTCGGAAGGATCCTCAGGAAGGATATCGAACTCTTGTTGAGAATCAACCAGTCTATATCCATCCTAGTAGTGCCCTGTTCCAAAGACAGCCTGACTGGGTGATCTATTATGAACTTGTAATGACCACCAAAGAGTACATGCGGGAAGTAACTGTTGTTGATCCAAAATGGTTGGTAGAATTGGCACCAAGGTTCTTCAAGGTAGCTGATCCTACAAAACTAAGCAAGCGCAAGCGGCAGGAGCGCATTGAGCCTCTTTATGACCGTTATCATGAACCCAACTCATGGCGTCTTAGCAAGCGTCGTGCCTGA___AGGAGTATTATTTATAAAATATGTATTCTTTTGGAGGCACAATTTGTCTTTAACATACATGTTTCTTGAATGGTCTGGGAGTAGCAGCATCTTGGAGAACAAAATTTGCAGTAACGTTTTGGAACTACTTTTAGTTCTTGGAGGAGCATTTTGGAACTCCTAGCAGCAAGGTGGTTGCTTGGAATTGTGGAGAGACAAGTTGAAACTCAAGCTTCAAAGGCAGAATGAATCACACTTCTTCTGATGATAAGAGTGAAAGGGGAAAAGGCCAAATTGGAGAAATAGGAACCTGGCAGTGGATCTTCATGTTCATGTTAAGCTGTCTATTAAGGGTAAAGAGTAATTGTAACGTGGCAAAATCACTTTTGTGATCTACAGTTAGAATAACAGGAAATAAAGCTAGAACCAATAGTGGGTCACAAATGTCTACGCTATTCTCACAATGATTATAATTTTGAGGATTTTGCTAGAGTGATTTTACAGTTTGTTCATCATTATCCATGGGATAGGTTATGTCCAAATATCACTTGGCATTTTGAGTTTGGCTGAATGCAAAATTGAAAATCTGACTTGGATGAGAAAATTGAAACATCCAAAGGAAATCTAAAACGTGA

Fln Alignment:

Contig7374___MLPTTVPEIQRINLGLTTLNMKAMGINDLLSFDFMDPPPPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTIIAMLQTQNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVISAGKNFTKIRKAIAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALF--QRQPDWVIYYELVMTTKEYMREVTVVDPKWLVELAPRFFKVADP-TKLSKRKRQERIE
D5ADJ5______________MLPNPVPEIQRTNLGNVVLLLKSLNIENLLDFDFMDPPPQDNILNSMYQLWVLGALDNVGRLTALGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKMQKITLTTCGHDWDVIRKAICSAYFHNAARLKGIGEYANSRTGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVEPQWLAELGPMFFSIKDSHTSMLEQKKKQREE

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
663	25			75	0.996473
665		75	25		0.996473
712	25	75			0.996473
769			40	60	1.0
778	50		50		1.0
784	50		50		1.0
879			25	75	0.996473
880	75			25	0.996473
884	75	25			0.996473
894	25	75			0.996473
899			25	75	0.996473
901		25		75	0.996473
908		25	75		0.996473
913		20		80	0.995493
915	80			20	0.995493
927		12		87	0.992554
935	87			12	0.992554
940		87		12	0.992554
971	50	50			1.0
992			57	42	1.0
1068		42	57		1.0
1079		42		57	1.0
1081	50	50			1.0
1098	50	50			1.0
1109		50		50	1.0
1177		50		50	1.0
1279		75		25	0.996473
1291		75		25	0.996473
1312		80		20	0.995493
1348		80		20	0.995493
1349	80	20			0.995493
1352		80		20	0.995493
1438		16		83	0.994512
1451		16	83		0.994512
1501		85		14	0.993533
1552		90		10	0.90298
1828	18		81		0.999994
1888	25		75		1.0
1921	85		14		0.993533
1995	25			75	0.996473
1997	25			75	0.996473
2000	66	33			0.997452
2008	25			75	0.996473
2009	25		75		0.996473
2010		25		75	0.996473
2011			25	75	0.996473
2014			25	75	0.996473
2060	33			66	0.997452
2164	66			33	0.997452
2327		40		60	1.0
2408	40		60		1.0
2480		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain