SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7368

Length: 2117 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7368
ACTTAAAAGCACCCCTGAGATTCAGTCTTGGTGCTGCATATTCTGAGAATTGGGGGATTTTTCTGTAGGGTGACTAGAATTGAGTCGAAACGGAGATGGCAATGGCGATGCTGCCGAGAACGGGATCGCAAGTTCGTCCCGGGGTCGAATTTGGCAATGGCAGATGTTGTATGGGAACTTCGGGCCAGTCCAGAAGAGCTGCCTCGAGGGTTTTCCATTCATTGCAGAAAAATGTTCTGGGATCGCCAGTCGAGCAATCGCTGTTAGGTCGGAAAGAACGTAAGGGTGTTGTCACGGTCAAGTGCTCTGTTCTTGCTGACGTTGCCAAAGAGATCGCGGTGGCAATGCCTGAGAAGCCTCCTGCAGACCCTAAAACAGTACTTGCTATCATACTAGGCGGTGGAGCAGGAACACGGCTTTTTCCTCTTACAGGAAGAAGAGCCAAACCGGCAGTACCAATTGGAGGCGCATACAGACTCATTGATGTACCAATGAGCAATTGCATTAACAGTGGGATCAATAAGATATTCATCTTAACACAGTTTAATTCTCAGTCTCTAAATCGTCACATTTCCAAGGCATATGGTTTTGGAAATGGTGTGAACTTCGGTGATGGCTTTGTGGAGGTTCTAGCAGCCACTCAGACTCCAGGCGAAGATGGGATGAATTGGTTTCAGGGCACAGCAGATGCCGTGAGGCAATTTATGTGGCTTTTTGAGGATCCGAGGAATAGGCATATAGAACATGTTATTATTTTGTCGGGTGACCATCTCTACCGTATGGACTATATGGACTTTGTACAGAAACACATTGATAAGGAGGCTGATATCACACTTTCATGTGTCTCGATGGATGACAGCCGTGCTTCTGATTTTGGTCTCATGAAAATTGATGATAGAGGCCGCGTGCTTTATTTTAGTGAGAAGCCTAAGGGGGCTGATCTAAAAGCTATGAAAGTGGACACAACAGTGCTTGGTTTGTCACCCAATGAGGCTGACAAAAACCCATACATTGCATCAATGGGTGTATATGTCTTCAAGATAGACATTCTTCTCAAGCTTCTCAGGTTTAGATACCCGACTGCCAATGATTTTGGATCAGAAATTATTCCTGCATCAACAAAAGAATGCAATGTACAGGCATATCTTTTTAATGATTACTGGGAGGACATAGGAACAATCAAATCATTTTTTGACGCAAATTTGGCTCTTGGAGCTCAGGTTCCAAAGTTCTGTTTTTATGATGCCAAGAAGCCAATCTTCACATCACCCCGTTTTCTGCCACCAACTAAAATAGATAAATGCCGGGTACTGGATTCAATAGTTTCACATGGATGTTTTCTTCAGAAATGCAATATCGAGCATTCCATTGTTGGAATTCGTTCACGTCTGGAATCTGGAGTTGAATTGAAGGATACCATGATGATTGGCGCTGACTATTATGAAACAGAGGCTGAGATTGCAGCACTCCTGGCAGAAGGGAAAGTACCTATTGGAATTGGGAAGAACACAAAAATAAGGAATTGTATCATTGACAAAAATGCAAGGATTGGAAAGAATGTTACGATTTCAAACACTGATAATGTACAGGAAGCGGATAGACCCTCACAAGGCTTTTACATCCGCTCAGGGATAACTGTAGTACTAAAAAACTCAATAATCCATAATGACAGCATAATCTAACAAATGAGGCCTGGCTTTGTCTGGGCTCTTTAAGTCAGGTTCTCGATAATTAGTATCTACATATGGAGATCAACAGCTCGTGAATTAGGCTGAAGAGGGTTTTAATCTCAATTAAAACCAGCACGGTAGCTTATGAGTTAAGTTACAAGGAGGAGATAATGCAAGGATTGAGCTGCAGTTGTATTCTTGTAATTAGTGTTGTTTTTTCGGTGCAGCATCAAGCATGTAGCCTCGAATATTATAAGCTTATTGCAACAATGGCATCAAGCATTCCATATTTGGGTTTCATTTCAAAATCTCTAGAACTTGCATGTCAAGGCCGCACGAGTTAATTCACATTAGTATGGACTGAATACCAGGCAAGCAATAAAAAAAGCTTCTATTGAGCAAATTGACGACTGGCATGTCTTCAATTATTATCGACCATTGAATATC

Ace file of the UniGene sp_v3.0_unigene7368 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=3 Tax=Selaginella moellendorffii RepID=D8RB04_SELML	-	-	74%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Sma3	Glucose-1-phosphate adenylyltransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucose-1-phosphate adenylyltransferase.	EC:2.7.7.27	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	10A19I.12; ADG1; ADG2; ADG2A; AGA.1; AGA.3; AGA.7; AGP; AGP-L; AGP-L1; AGP-S; AGP-S1; AGP-S2; AGP1; AGP2; AGPB1; AGPC; AGPL; AGPLI-2; AGPLI-3; AGPLS3; AGPLS4; AGPP; AGPS; AGPS1; AGPS2; AGPS3; AGPase; APL1; APL2; APL3; APS; APS1; AT2G21590; AgpL1; ApS2; At

Source	GOs	Term	Type	Identity
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	glucose-1-phosphate adenylyltransferase complex	GO:0010170	Cellular Component	-
Sma3	heterotetrameric ADPG pyrophosphorylase complex	GO:0030931	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	glucose-1-phosphate adenylyltransferase activity	GO:0008878	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	glycogen biosynthetic process	GO:0005978	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	starch biosynthetic process	GO:0019252	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-
Sma3	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Glucose-1-phosphate adenylyltransferase	IPR011831	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G27680.1	APL2 ADPGLC-PPase large subunit chr1:9631630-9634450 FORWARD LENGTH=518	76%
RefSeq	Arabidopsis thaliana	NP_174089.1	glucose-1-phosphate adenylyltransferase large subunit 2 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002320247.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE1

Fln msg:

Fln protein: MAMAMLPRTGSQVRPGVEFGNGRCCMGTSGQSRRAASRVFHSLQKNVLGSPVEQSLLGRKERKGVVTVKCSVLADVAKEIAVAMPEKPPADPKTVLAIILGGGAGTRLFPLTGRRAKPAVPIGGAYRLIDVPMSNCINSGINKIFILTQFNSQSLNRHISKAYGFGNGVNFGDGFVEVLAATQTPGEDGMNWFQGTADAVRQFMWLFEDPRNRHIEHVIILSGDHLYRMDYMDFVQKHIDKEADITLSCVSMDDSRASDFGLMKIDDRGRVLYFSEKPKGADLKAMKVDTTVLGLSPNEADKNPYIASMGVYVFKIDILLKLLRFRYPTANDFGSEIIPASTKECNVQAYLFNDYWEDIGTIKSFFDANLALGAQVPKFCFYDAKKPIFTSPRFLPPTKIDKCRVLDSIVSHGCFLQKCNIEHSIVGIRSRLESGVELKDTMMIGADYYETEAEIAALLAEGKVPIGIGKNTKIRNCIIDKNARIGKNVTISNTDNVQEADRPSQGFYIRSGITVVLKNSIIHNDSII*

Protein Length: 530

Fln nts: ACTTAAAAGCACCCCTGAGATTCAGTCTTGGTGCTGCATATTCTGAGAATTGGGGGATTTTTCTGTAGGGTGACTAGAATTGAGTCGAAACGGAG_-_ATGGCAATGGCGATGCTGCCGAGAACGGGATCGCAAGTTCGTCCCGGGGTCGAATTTGGCAATGGCAGATGTTGTATGGGAACTTCGGGCCAGTCCAGAAGAGCTGCCTCGAGGGTTTTCCATTCATTGCAGAAAAATGTTCTGGGATCGCCAGTCGAGCAATCGCTGTTAGGTCGGAAAGAACGTAAGGGTGTTGTCACGGTCAAGTGCTCTGTTCTTGCTGACGTTGCCAAAGAGATCGCGGTGGCAATGCCTGAGAAGCCTCCTGCAGACCCTAAAACAGTACTTGCTATCATACTAGGCGGTGGAGCAGGAACACGGCTTTTTCCTCTTACAGGAAGAAGAGCCAAACCGGCAGTACCAATTGGAGGCGCATACAGACTCATTGATGTACCAATGAGCAATTGCATTAACAGTGGGATCAATAAGATATTCATCTTAACACAGTTTAATTCTCAGTCTCTAAATCGTCACATTTCCAAGGCATATGGTTTTGGAAATGGTGTGAACTTCGGTGATGGCTTTGTGGAGGTTCTAGCAGCCACTCAGACTCCAGGCGAAGATGGGATGAATTGGTTTCAGGGCACAGCAGATGCCGTGAGGCAATTTATGTGGCTTTTTGAGGATCCGAGGAATAGGCATATAGAACATGTTATTATTTTGTCGGGTGACCATCTCTACCGTATGGACTATATGGACTTTGTACAGAAACACATTGATAAGGAGGCTGATATCACACTTTCATGTGTCTCGATGGATGACAGCCGTGCTTCTGATTTTGGTCTCATGAAAATTGATGATAGAGGCCGCGTGCTTTATTTTAGTGAGAAGCCTAAGGGGGCTGATCTAAAAGCTATGAAAGTGGACACAACAGTGCTTGGTTTGTCACCCAATGAGGCTGACAAAAACCCATACATTGCATCAATGGGTGTATATGTCTTCAAGATAGACATTCTTCTCAAGCTTCTCAGGTTTAGATACCCGACTGCCAATGATTTTGGATCAGAAATTATTCCTGCATCAACAAAAGAATGCAATGTACAGGCATATCTTTTTAATGATTACTGGGAGGACATAGGAACAATCAAATCATTTTTTGACGCAAATTTGGCTCTTGGAGCTCAGGTTCCAAAGTTCTGTTTTTATGATGCCAAGAAGCCAATCTTCACATCACCCCGTTTTCTGCCACCAACTAAAATAGATAAATGCCGGGTACTGGATTCAATAGTTTCACATGGATGTTTTCTTCAGAAATGCAATATCGAGCATTCCATTGTTGGAATTCGTTCACGTCTGGAATCTGGAGTTGAATTGAAGGATACCATGATGATTGGCGCTGACTATTATGAAACAGAGGCTGAGATTGCAGCACTCCTGGCAGAAGGGAAAGTACCTATTGGAATTGGGAAGAACACAAAAATAAGGAATTGTATCATTGACAAAAATGCAAGGATTGGAAAGAATGTTACGATTTCAAACACTGATAATGTACAGGAAGCGGATAGACCCTCACAAGGCTTTTACATCCGCTCAGGGATAACTGTAGTACTAAAAAACTCAATAATCCATAATGACAGCATAATCTAA___CAAATGAGGCCTGGCTTTGTCTGGGCTCTTTAAGTCAGGTTCTCGATAATTAGTATCTACATATGGAGATCAACAGCTCGTGAATTAGGCTGAAGAGGGTTTTAATCTCAATTAAAACCAGCACGGTAGCTTATGAGTTAAGTTACAAGGAGGAGATAATGCAAGGATTGAGCTGCAGTTGTATTCTTGTAATTAGTGTTGTTTTTTCGGTGCAGCATCAAGCATGTAGCCTCGAATATTATAAGCTTATTGCAACAATGGCATCAAGCATTCCATATTTGGGTTTCATTTCAAAATCTCTAGAACTTGCATGTCAAGGCCGCACGAGTTAATTCACATTAGTATGGACTGAATACCAGGCAAGCAATAAAAAAAGCTTCTATTGAGCAAATTGACGACTGGCATGTCTTCAATTATTATCGACCATTGAATATC

Fln Alignment:

Contig7368___VKCSVLADVAKEIAVAMPEKPPADPKTVLAIILGGGAGTRLFPLTGRRAKPAVPIGGAYRLIDVPMSNCINSGINKIFILTQFNSQSLNRHISKAYXXXXXXXXXXXXVEVLAATQTPGEDGMNWFQGTADAVRQFMWLFEDPRNRHIEHVIILSGDHLYRMDYMDFVQKHIDKEADITLSCVSMDDSRASDFGLMKIDDRGRVLYFSEKPKGADLKAMKVDTTVLGLSPNEADKNPYIASMGVYVFKIDILLKLLRFRYPTANDFGSEIIPASTKECNVQAYLFNDYWEDIGTIKSFFDANLALGAQVPKFCFYDAKKPIFTSPRFLPPTKIDKCRVLDSIVSHGCFLQKCNIEHSIVGIRSRLESGVELKDTMMIGADYYXXXXXXXXXXXEGKVPIGIGKNTKIRNCIIDKNARIGKNVTISNTDNVQEADRPSQGFYIRSGITVVLKNSIIHNDSII
B8LPE1______________VSMSLLIEVPKESTLKRVESSKADPRTVVSVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYSFCNGVNFGDGFVEVLAATQRPGEMGKNWFQGTADAVRQFAWLFEDAKNKEIDDILILSGDHLYRMDYMDFVQKHRDSGADITISCIPIDDSRASDFDLMKIDDNGQVLYFSEKPKGDDLKAMGVDTTVLGLSPEDAKKKPYIASMGVYVFKKEILLNLLRWRFHTANDFGSEIIPASAKEYFVKAYLFDDYWEDIGTIKSFFEANLALIAQPPKFSFYDAKKPIYTSPRNVPPTKVDNCKIVDSIVSHGCFLQNCYIEHSIIGIRSRIESDVSLQDAVMLGADYYETDAEVVSLLAEGKVPVGIGQNTKIRNCIIDKNARIGKNVTIANSENIKEADRTEEGFCIRSGITVILKNSTIKDGLVI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
2086	57	42			1.0
2087		42	57		1.0
2089	57	42			1.0
2091			57	42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain