SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7350

Length: 2245 nt

UniGene Fasta

>sp_v3.0_unigene7350
GCTCTTCATGGGGTTCGTTCAAGGATGCAGCAGCCACCGCAGCACCAGAGTGCTGATTATCACAGGGGACTCCCAACGCGGCAGCCTTCCATGGCATCCAGTAATTTGTCAGGAGATTATGGCACACATGGTGATGGGCTTGCTGCTAAAAGGGCTAGAAAGGTTGTACATCGTCGGACAGTTGATTATACGAGTACGGTTGCTCGTTACATACAGGTTCGGATGTGGCAACGTGATGTCAGGGATAGTACGGTTTTGCAACCTACGCCAGTTGCAACCATAGATATGCTGCCATCTGTTGCCTATACAGACAATCCGTCAACAAGCTTTGCAACCAAATTTGTGCATGCATCTACAAATAAAAATCGTTGCTCTATCAACAGAGTTGTATGGACGCCAACGGGTAGACGCCTTATAACAGGATCACAGAGTGGGGAGTTTACACTTTGGAATGGCCAAGCATTTAATTTTGAAATGATTCTTCAGGCTCATGATGATCCAATTAGGTCCATGGTATGGAGTCATAATGAGAATTGGATGGTTACTGGTGATAATGGCGGTTCAATCAAGTACTGGCAAACTAATATGAACAATGTGAAAGCAAACAAATCAGCACATAGAGAGGCTGTCCGTGATTTAAGTTTTTGTAGAACAGATTTGAAATTTTGCTCCTGTTCGGATGACACAACAGTCAAAGTTTGGGACTTCGCCCGCTGCCAGGAAGAGAGATCTCTGACTGGCCATGGGTGGGATGTAAAGAGTGTCGACTGGCATCCAACAAAATCTCTGCTAGTTTCAGGTGGTAAGGACACTGTCATAAAGATGTGGGATGCAAAGACTGGCCGGGAGCTCTGTTCACTCCATGGTCATAAGAATACTGTTGTATGTGTCAAATGGAATCAAAATGGCAATTGGGTGCTTACTGCATCAAAGGACCAGATTATAAAGCTTTACGATATACGAATGTTAAAAGAACTTGAATCTTATCGTGGCCATCGCAAGGATGTAACAGCATTGGCATGGCATCCTTTCCATGAGGAGTTATTCGTAAGTGGGAGCTATGATGGAGCCATTATTCACTGGCTTGTTGGACATGAAGTTCCTCAAGTTGAAGTACCCAATGCCCATGAGAGTGGAGTATGGGACCTTGCGTGGCATCCTATGGGTCACATCCTCTGCAGTGGGAGTAATGATCATACAACAAAGTTTTGGTGCAGAAACCGTCCAGGTGACACAGCTAGAGACAAACACGCTTCATACATACCAGGCTCAAGTGAACAAAATATTGTTCTGGGTCGTTCATCCAACAATTTTCAGACATCAGAAGGTCCAACTACCCCGGGACCATTTGCAGCAGGAGGAACAATGCGTGGCGAAGGAACAATTCCAGGTGTCGGTGCAGCTATGCCTCTGTCACTTCCAACACTTGATACAACCCCACAGGCAGAACAACCACAACAATCTGTGTTGGGCTCAGCTCCCCCAGGAGTTCATCCAGGAGGTCCTCATCCTCCATTTGCTCCTCATCCTTCTATTGCTACATCTACTCAACAAATGTATCAGCAAACACAACAGCAACAGCAGCATCAGATGGGTCATCTGCCACATCCACCTCCACCATTACCACCCCAACCACCCCATTTGCAACAGCAGCAGCAGCAGCAACTACAGCATCCACAACAAGTACAAGCTCCTCCAATGCCTTTAGGATTACATCCACATCCACCGCCACCACCTCGACCGCCATTACCACAACCTCCTCAAATAGGAATGCCATCTTCTATGCCTGTTTCAATGCCATCATCACTGCCAAATGCAGTGGTGTCGGCAGAGTCTATGCTTCCAAGACCAGGACCTAATTTGTCCTCAGCTCATATGCTTCATTCCAGTCAATATTCTTCCATGGTATCATTGCCAGGACAATTAGCCCAAGGTTCATCAAATCAAATTATAACTCAAGTACCTCAATCTCATGCGCTTGGGCAGGTTTCTGTGTCAAACCTTCCAACTGGCATAGGAGGCTTTTTGAATGGTGTTACAAGTGTTTTGGAAAGTCAAAATCCTGTTTCTGGAGCTCCTCCTTTTCCATCTAACACAGTTGGCATGCAGCCTCTACCTCCAGCATTAATTACATCAACTTCTGGAACATACAACAGGCCGCAAAGTGGACCATTACCACCGGTGTCAATATCTCCAGTGCTCAATACGTACCAGTCAGCTGCTGCTCAAAACATGATGGATGTGA

Ace file of the UniGene sp_v3.0_unigene7350

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	24%

Source	Gene names
Sma3	B1147A04.35; CHLREDRAFT_167492; FY; GSVIVT00030977001; MICPUCDRAFT_1961; MICPUN_66469; MtrDRAFT_AC153125g50v2; OSTLU_2326; Os01g0951000; OsI_05213; OsJ_04772; Ot01g05180; PAF1; PHATRDRAFT_29608; PHYPADRAFT_51117; POPTRDRAFT_178488; POPTRDRAFT_415574; RCOM

Source	GOs	Term	Type	Identity
Sma3	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13480.2	-	65%
RefSeq	Arabidopsis thaliana	NP_196852.3	Flowering time control protein FY [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002303922.1	predicted protein, partial [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: STOP codon was not found. Distance to subject end: 340 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 740 - 314

Fln protein: MQQPPQHQSADYHRGLPTRQPSMASSNLSGDYGTHGDGLAAKRARKVVHRRTVDYTSTVARYIQVRMWQRDVRDSTVLQPTPVATIDMLPSVAYTDNPSTSFATKFVHASTNKNRCSINRVVWTPTGRRLITGSQSGEFTLWNGQAFNFEMILQAHDDPIRSMVWSHNENWMVTGDNGGSIKYWQTNMNNVKANKSAHREAVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDTVIKMWDAKTGRELCSLHGHKNTVVCVKWNQNGNWVLTASKDQIIKLYDIRMLKELESYRGHRKDVTALAWHPFHEELFVSGSYDGAIIHWLVGHEVPQVEVPNAHESGVWDLAWHPMGHILCSGSNDHTTKFWCRNRPGDTARDKHASYIPGSSEQNIVLGRSSNNFQTSEGPTTPGPFAAGGTMRGEGTIPGVGAAMPLSLPTLDTTPQAEQPQQSVLGSAPPGVHPGGPHPPFAPHPSIATSTQQMYQQTQQQQQHQMGHLPHPPPPLPPQPPHLQQQQQQQLQHPQQVQAPPMPLGLHPHPPPPPRPPLPQPPQIGMPSSMPVSMPSSLPNAVVSAESMLPRPGPNLSSAHMLHSSQYSSMVSLPGQLAQGSSNQIITQVPQSHALGQVSVSNLPTGIGGFLNGVTSVLESQNPVSGAPPFPSNTVGMQPLPPALITSTSGTYNRPQSGPLPPVSISPVLNTYQSAAAQNMMDV

Protein Length: 741

Fln nts: GCTCTTCATGGGGTTCGTTCAAGG_-_ATGCAGCAGCCACCGCAGCACCAGAGTGCTGATTATCACAGGGGACTCCCAACGCGGCAGCCTTCCATGGCATCCAGTAATTTGTCAGGAGATTATGGCACACATGGTGATGGGCTTGCTGCTAAAAGGGCTAGAAAGGTTGTACATCGTCGGACAGTTGATTATACGAGTACGGTTGCTCGTTACATACAGGTTCGGATGTGGCAACGTGATGTCAGGGATAGTACGGTTTTGCAACCTACGCCAGTTGCAACCATAGATATGCTGCCATCTGTTGCCTATACAGACAATCCGTCAACAAGCTTTGCAACCAAATTTGTGCATGCATCTACAAATAAAAATCGTTGCTCTATCAACAGAGTTGTATGGACGCCAACGGGTAGACGCCTTATAACAGGATCACAGAGTGGGGAGTTTACACTTTGGAATGGCCAAGCATTTAATTTTGAAATGATTCTTCAGGCTCATGATGATCCAATTAGGTCCATGGTATGGAGTCATAATGAGAATTGGATGGTTACTGGTGATAATGGCGGTTCAATCAAGTACTGGCAAACTAATATGAACAATGTGAAAGCAAACAAATCAGCACATAGAGAGGCTGTCCGTGATTTAAGTTTTTGTAGAACAGATTTGAAATTTTGCTCCTGTTCGGATGACACAACAGTCAAAGTTTGGGACTTCGCCCGCTGCCAGGAAGAGAGATCTCTGACTGGCCATGGGTGGGATGTAAAGAGTGTCGACTGGCATCCAACAAAATCTCTGCTAGTTTCAGGTGGTAAGGACACTGTCATAAAGATGTGGGATGCAAAGACTGGCCGGGAGCTCTGTTCACTCCATGGTCATAAGAATACTGTTGTATGTGTCAAATGGAATCAAAATGGCAATTGGGTGCTTACTGCATCAAAGGACCAGATTATAAAGCTTTACGATATACGAATGTTAAAAGAACTTGAATCTTATCGTGGCCATCGCAAGGATGTAACAGCATTGGCATGGCATCCTTTCCATGAGGAGTTATTCGTAAGTGGGAGCTATGATGGAGCCATTATTCACTGGCTTGTTGGACATGAAGTTCCTCAAGTTGAAGTACCCAATGCCCATGAGAGTGGAGTATGGGACCTTGCGTGGCATCCTATGGGTCACATCCTCTGCAGTGGGAGTAATGATCATACAACAAAGTTTTGGTGCAGAAACCGTCCAGGTGACACAGCTAGAGACAAACACGCTTCATACATACCAGGCTCAAGTGAACAAAATATTGTTCTGGGTCGTTCATCCAACAATTTTCAGACATCAGAAGGTCCAACTACCCCGGGACCATTTGCAGCAGGAGGAACAATGCGTGGCGAAGGAACAATTCCAGGTGTCGGTGCAGCTATGCCTCTGTCACTTCCAACACTTGATACAACCCCACAGGCAGAACAACCACAACAATCTGTGTTGGGCTCAGCTCCCCCAGGAGTTCATCCAGGAGGTCCTCATCCTCCATTTGCTCCTCATCCTTCTATTGCTACATCTACTCAACAAATGTATCAGCAAACACAACAGCAACAGCAGCATCAGATGGGTCATCTGCCACATCCACCTCCACCATTACCACCCCAACCACCCCATTTGCAACAGCAGCAGCAGCAGCAACTACAGCATCCACAACAAGTACAAGCTCCTCCAATGCCTTTAGGATTACATCCACATCCACCGCCACCACCTCGACCGCCATTACCACAACCTCCTCAAATAGGAATGCCATCTTCTATGCCTGTTTCAATGCCATCATCACTGCCAAATGCAGTGGTGTCGGCAGAGTCTATGCTTCCAAGACCAGGACCTAATTTGTCCTCAGCTCATATGCTTCATTCCAGTCAATATTCTTCCATGGTATCATTGCCAGGACAATTAGCCCAAGGTTCATCAAATCAAATTATAACTCAAGTACCTCAATCTCATGCGCTTGGGCAGGTTTCTGTGTCAAACCTTCCAACTGGCATAGGAGGCTTTTTGAATGGTGTTACAAGTGTTTTGGAAAGTCAAAATCCTGTTTCTGGAGCTCCTCCTTTTCCATCTAACACAGTTGGCATGCAGCCTCTACCTCCAGCATTAATTACATCAACTTCTGGAACATACAACAGGCCGCAAAGTGGACCATTACCACCGGTGTCAATATCTCCAGTGCTCAATACGTACCAGTCAGCTGCTGCTCAAAACATGATGGATGTGA

Fln Alignment:

Contig7350___KFVHASTNKNRCSINRVVWTPTGRRLITGSQSGEFTLWNGQAFNFEMILQAHDDPIRSMVWSHNENWMVTGDNGGSIKYWQTNMNNVKANKSAHREAVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDTVIKMWDAKTGRELCSLHGHKNTVVC-VKWNQNGNWVLTASKDQIIKLYDIRMLKELESYRGH--RKDVTALAWHPFHEELFVSGSYDGAIIHW-LVGHEVPQVEVPNAHESGVWDLAWHPMGHILCSGS--NDHTTKFW
A9NPC1______________KLKHILTGHKR-AVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNI--VQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
950		11		88	0.923564
1281	83	16			0.994512
1283	83			16	0.994512
1423	80		20		0.995493
1571	87		12		0.992554
1880		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1648	1664	CAG CAG CAG CAG CAG CA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain