SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7349

Length: 2039 nt

UniGene Fasta

>sp_v3.0_unigene7349
ATCTGACTTCTCCAGAAACGCATTTTTCACCATAAGTTTCAGGAGAAGTCAGATCTCTTCAATTCTGAAGAACCTGAAAATGACAAGGTTAAATTAGGCGAGTCTGGATGGAAAGAGAGATACTATTCTGAAAAATTTGAGGCACATACACAACAAGCTCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACATTAACGGAACAAGAAAAATTGAGAAACAGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAGCGGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGTTTCCAGTGGTGGATTTAATGGTTACTTCGGTCTCTGTGATGGGGATGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGCAGATGGAAAACATAGTAAACAATCAAGTTTTGTCTGTAATTTACAAGTGCCCGGCTACGCATAAACACATTCCAAGGCCCCCGGATGGGGTCATCATTCCAAAGAAGTCTGTATGTGCACAGGATGTAAGGACACAAGCCTTATGGCATGAAGATACTGGTCGAAGGCACCAGAATCAAGATAGGCCACCTGTTCGCGGTGCTATCTCAGGTCCTCAGCTTGGATCAGCAGCTCATCGTCTTGTCGTCAATAGTCTGCAGTTAAAAAGCAGTAGTTTGGGACGAGCTAAACATATAGTGCAGCAACCAGTCCCGGGGATGTCTTCTTTCGTAAATAGTAAAAACCATAATCTGAGCCCAAAACCAAGGCCAGCTGGTCCTCAAGGTTATGAAAATGGTTTTCATTTCTCTGGGGGGCAGGTTTCTAATGGTGGAATGCATAAGTCACAACAAAATGCAAAGTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAATGCCAAAAATAAAAGGGGACGTGGTTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAAAGCCAAAAATAAAAGGGGACGTGGTAGGAGAGATCACTCACAGCAGCAGCGGAATGGTGAGAGTTATGATAGTGATCGCCAACAGCAGCGCAGTGATGTGATACATGCTGATAGCTACCAGCGACAGCTCGACACGCATTATCAATCACATCAAGCTAATACTGAACAATATAACCAGCTACCATTTGTGCATGTAGATACTCAACGGCATCTGCCCAGAATGCGACCACCATTTGAGGGAATCACAAGGGGTAGTAGTCTTGCGCAGATGTATTCGAGGGCTCCGTCTGCAACAATCAATGGTTACACGATAAATCGTCCATACCCAACAGTCAATGGCTACCCTTTAAATAATGGGGTATATGACAACATTCAAGGCAGGGCGAGGTCTGCCATGCTGCCAGGAAACATGTACTATAGTCGTTATTAATTTTATGTATTTTCATTGGGGATTATATCCTATCCCCGTCCTCTTTAAATCCAGTTTTCCAGCTTTTGGCGAAACATCTAATTATTGGTATTAGTTTTGATGTACAATAAAAGCATTCTTTGATTTTTATTGGTCTTTTATAGCCTTATTAGGAGGTTTAGGAGGTTCATTGTGGCTTAACTATTCGAAATTGGAAATCTCGACGTTTA

Ace file of the UniGene sp_v3.0_unigene7349

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0872700 protein n=3 Tax=Oryza sativa RepID=Q5N739_ORYSJ	-	-	0.0	54%
FL-Next	sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	5'->3' exoribonuclease, putative	-	-	2.293e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Exoribonucleases producing 5'-phosphomonoesters.	EC:3.1.13.-	-	7.497e-12	-

Source	Gene names
Sma3	AIN1; At1g54490; At1g75660; At5g42540/At5g42550; EIN5; F10A5.15; F20D21.30; GSVIVT00014087001; GSVIVT00014448001; GSVIVT00031115001; GSVIVT00037275001; K16E1.2; LOC_Os03g58060; OSJNBb0008G24.22; OSJNBb0021G19.19; OSTLU_41082; OSTLU_526; Os01g0872700; Os03

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	exonuclease activity	GO:0004527	Molecular Function	-
Sma3	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, exonucleolytic	GO:0000291	Biological Process	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	miRNA catabolic process	GO:0010587	Biological Process	-
Sma3	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	-
Sma3	regulation of gene expression, epigenetic	GO:0040029	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	5'-3' exoribonuclease 2	IPR017151	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G75660.1	XRN3, AtXRN3 5'-3' exoribonuclease 3 chr1:28408289-28414825 FORWARD LENGTH=1020	55%
RefSeq	Arabidopsis thaliana	NP_565114.1	5'-3' exoribonuclease 3 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002306919.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9FQ03

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 610 - 1020

Fln protein: I*LLQKRIFHHKFQEKSDLFNSEEPENDKVKLGESGWKERYYSEKFEAHTQQAREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTLTEQEKLRNSERFDLLFVMASHRLAPDILSLYKRYAHLTVNERAKVKEKINPVSSGGFNGYFGLCDGDACPPVFTSPVKQMENIVNNQVLSVIYKCPATHKHIPRPPDGVIIPKKSVCAQDVRTQALWHEDTGRRHQNQDRPPVRGAISGPQLGSAAHRLVVNSLQLKSSSLGRAKHIVQQPVPGMSSFVNSKNHNLSPKPRPAGPQGYENGFHFSGGQVSNGGMHKSQQNAKSAALVDDHVSTQSTPNRNAKNKRGRGSAALVDDHVSTQSTPNRKAKNKRGRGRRDHSQQQRNGESYDSDRQQQRSDVIHADSYQRQLDTHYQSHQANTEQYNQLPFVHVDTQRHLPRMRPPFEGITRGSSLAQMYSRAPSATINGYTINRPYPTVNGYPLNNGVYDNIQGRARSAMLPGNMYYSRY*

Protein Length: 611

Fln nts: ATCTGACTTCTCCAGAAACGCATTTTTCACCATAAGTTTCAGGAGAAGTCAGATCTCTTCAATTCTGAAGAACCTGAAAATGACAAGGTTAAATTAGGCGAGTCTGGATGGAAAGAGAGATACTATTCTGAAAAATTTGAGGCACATACACAACAAGCTCGAGAGCAAACCAAAAAGGATGTTGTCTTGAAATATACAGAAGGACTTTGTTGGGTGATGCGCTATTATTATCAAGGAGTGTGCTCATGGCAGTGGTATTATCCATACCATTATGCTCCCTTTGCCTCTGATCTTGTGGGTCTCAGTCAGTTAAAGATTACATTTATTCTTCGGACTCCGTTCAAGCCATTCAATCAGTTAATGGGAGTTCTTCCATCTGCAAGTGCAAATGCACTTCCTGAGCATTACAGGCCATTAATGACTGATCCAAATTCACCTATCATTGACTTTTATCCCACTGATTTTGAAATTGATATGAATGGCAAGCGTTATGCCTGGCAGGGTGTTGCTAAATTACCATTCATTGATGAATCTCGTCTTCTTGCGGAAATTAGCAAGGTTGAAGGCACATTAACGGAACAAGAAAAATTGAGAAACAGTGAAAGGTTTGACTTGCTTTTTGTGATGGCAAGTCACCGCTTAGCTCCAGATATACTTTCTCTCTATAAGCGGTATGCACATCTTACAGTAAATGAGAGAGCTAAAGTCAAAGAAAAGATCAATCCTGTTTCCAGTGGTGGATTTAATGGTTACTTCGGTCTCTGTGATGGGGATGCTTGCCCACCTGTTTTCACTTCACCTGTTAAGCAGATGGAAAACATAGTAAACAATCAAGTTTTGTCTGTAATTTACAAGTGCCCGGCTACGCATAAACACATTCCAAGGCCCCCGGATGGGGTCATCATTCCAAAGAAGTCTGTATGTGCACAGGATGTAAGGACACAAGCCTTATGGCATGAAGATACTGGTCGAAGGCACCAGAATCAAGATAGGCCACCTGTTCGCGGTGCTATCTCAGGTCCTCAGCTTGGATCAGCAGCTCATCGTCTTGTCGTCAATAGTCTGCAGTTAAAAAGCAGTAGTTTGGGACGAGCTAAACATATAGTGCAGCAACCAGTCCCGGGGATGTCTTCTTTCGTAAATAGTAAAAACCATAATCTGAGCCCAAAACCAAGGCCAGCTGGTCCTCAAGGTTATGAAAATGGTTTTCATTTCTCTGGGGGGCAGGTTTCTAATGGTGGAATGCATAAGTCACAACAAAATGCAAAGTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAATGCCAAAAATAAAAGGGGACGTGGTTCTGCTGCTTTAGTGGACGATCATGTTAGTACCCAGTCAACTCCAAATCGGAAAGCCAAAAATAAAAGGGGACGTGGTAGGAGAGATCACTCACAGCAGCAGCGGAATGGTGAGAGTTATGATAGTGATCGCCAACAGCAGCGCAGTGATGTGATACATGCTGATAGCTACCAGCGACAGCTCGACACGCATTATCAATCACATCAAGCTAATACTGAACAATATAACCAGCTACCATTTGTGCATGTAGATACTCAACGGCATCTGCCCAGAATGCGACCACCATTTGAGGGAATCACAAGGGGTAGTAGTCTTGCGCAGATGTATTCGAGGGCTCCGTCTGCAACAATCAATGGTTACACGATAAATCGTCCATACCCAACAGTCAATGGCTACCCTTTAAATAATGGGGTATATGACAACATTCAAGGCAGGGCGAGGTCTGCCATGCTGCCAGGAAACATGTACTATAGTCGTTATTAA___TTTTATGTATTTTCATTGGGGATTATATCCTATCCCCGTCCTCTTTAAATCCAGTTTTCCAGCTTTTGGCGAAACATCTAATTATTGGTATTAGTTTTGATGTACAATAAAAGCATTCTTTGATTTTTATTGGTCTTTTATAGCCTTATTAGGAGGTTTAGGAGGTTCATTGTGGCTTAACTATTCGAAATTGGAAATCTCGACGTTTA

Fln Alignment:

Contig7349___QEKSDLFNSEEPENDKVKLGESGWKERYYSEKFEAHTQQAREQTKKDVVLKYTEGLCWVMRYYYQGVCSWQWYYPYHYAPFASDLVGLSQLKITFILRTPFKPFNQLMGVLPSASANALPEHYRPLMTDPNSPIIDFYPTDFEIDMNGKRYAWQGVAKLPFIDESRLLAEISKVEGTLTEQEKLRNSERFDLLFVMASHRLAPDILSLYKRYAHLTVNERAKVKEKINPVSSGGFNGYFGLCDGDACPPVFTSPVKQMENIVNNQVLSVIYKCPATHKHIPRPPDGVIIPKKSVCAQDVR-TQALWHEDTGRR--------------HQNQDRPPVRGAISGPQLGSAAHRLVVNSLQLKSSSLGRAKHIVQQPVPGMS----SFVNSKNHNLSPKPRPAGPQGY
Q9FQ03______________REKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQMGTD---RYQTPTDVPAPGYGYNPPQYVPPIPYQHGGYMAPPGAQGY

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1061	11		88		0.923564
1128	11	88			0.923564
1168	10		90		0.90298
1170			90	10	0.90298
1171		90		10	0.90298
1192		22		77	0.999999
1236		16		83	0.994512
1246			12	87	0.992554
1330	25			75	1.0
1846	75			25	1.0
1954		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain