SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7348

Length: 2688 nt

UniGene Fasta

>sp_v3.0_unigene7348
ATGGGGAAAAAGGCAAAAGTGAAAGGTAAAAGCAAAGCACCCACTTAGACCGGTAGACGAAATCTCGATAAAACAAGAGAAAAAGGAGAATTGGTGGAAGGTGGGACGAAAATGGAAAGATTTAAAGATCCCATCTCTTGCTGGCGATGTAATGCATGGCACTGAATCGAAGTAGATCGAAGTACTCATCATGATGGGTAATTACGGAAGAATCCTCGCAGTATCCCCCATCTGGGGATCATCCAGCATGCTTGTATTTAAATCTGTCTTCGGGCCGCCCTGCCACACGCTGAATTCCTGAACAAGGCACTGGAGGATTCTTACTCGGGTTTGACTTGCGTTGGATTTTCCACGGTATTGAACAAGGTTTGAAGGTTAAAGTATATTTACTGTGGAAGAAGAAATCTGTAGAATTCTTCGCTGAACGTGGCGGCCTTGGGGTATTGCTTTCTATGAGGGAATACTGTTACTTGTAAGGTGTTTCATTTTCATGGGCAATACATGCCGGGGTTCTTTTAGAAACAGTTACACTCAGGGCTACAAAGAGCCCTCTGATCGTTCTAGCTATAGGAAGAATAGTAATCGTTGTACTAGCGAACACAATACAAGCAGAACTGATTCTCGATCTGATGGTTCAGTGAATAGCGTGACAGTGCATTTAATCTCAAACGACTTTGGCAAGGAGAACCTCGCGGCACACGTTCCACCGAAGAAACAAGTAGTCCTGGAAACCCTGCAAAGCCCCAAAGAGGACAACATGAGACGGGGAGGCGATACATTTTCCTCTTATGTCTTAGGTCACCGCACCGAGAATCTGAGAGATCTCTACGCAATGGGGCGAAAACTGGGTCAGGGTCAATTTGGGACAACTTATCTGTGTACTGAAATTGCCACGGGAAAGGAATATGCTTGCAAGTCGATCCCCAAGCGGAAGCTGATTTCTAAGGAGGACGTGGAGGATGTGAGGCGGGAGATTCAGATCATGCATCATTTGTCCGGGCATCCCAATGTTGTGACTATCAAAGGGGCTTATGAGGATTCCTTGCATGTGCACATTGTAATGGAACTATGTGCTGGGGGTGAGCTCTTTGATCGGATTATTGAGAGAGGACATTTTAGTGAACGGAAAGCGGCTGAGTTGACACGGATTATTGTTGGGGTCGTTGAAGCTTGCCATTCGTTAGGCGTTATGCATCGAGACTTGAAGCCGGAGAATTTTTTGCTTGTTAACAAGGATGATGATTCATCATTGAAGGCAATTGACTTTGGGCTGTCTGTCTTTTTCAAACCTGGTCAGGTGTTCACTGATGTGGTTGGAAGCCCATACTATGTTGCCCCGGAAGTGTTATGCAAACGCTATGGTCCAGAAGCAGATGTGTGGACAGCCGGGGTCATCCTATACATCTTACTCAGCGGTGTTCCACCATTTTGGGCAGAAACACAACAGGGAATTTTCGATGCTGTTCTACGAGGTTATATTGATTTTGATTCAGAACCCTGGCCCACAATTTCTGAGAGTGCCAAGGATCTTATCAGAAAGATGCTTACTTCAAAACCATCTGAGCGCCTGACTGCTCATGGAGTTCTATGTCATCCGTGGATATGTAAAGATGGTGTCGCTCCAGATCAAGCTTTGGATCCAGCTGTATTATCTCGATTAAAGCAATTTTCTGCAATGAATAAATTGAAGAAGATGGCACTTATGGTAATAGCTGAAAGCTTGTCAGAGGAAGAGATTGCAGGTTTGAGAGAGATGTTTAAGGCAATGGACACTGATAATAGTGGTTCAATAACTTTTGATGAGTTGACGGCTGGCTTAAAAAGATATGGATCTAACATGAAGGAGTCTGAGATTCGTGCTATAATGGATGCAGCTGATGTAGACAACAGTGGTACAATTGATTATGGAGAATTCATTGCTGCAACTTTTCATTTGAACAAATTGGAGCGTGAGGAGCATTTATTTGCTGCATTTTCATACTTTGACAAGGATGGAAGTGGTCAAATTACGGTTGATGAGCTCCAGCAAGCATGCTTAGAGCATAATCTAACTGATGTTCGTATTGATGAGATTATTCGTGAAGTAGATCAAAACAATGATGGGAGTATAGATTACAATGAATTTGTCGCTATGATGCGGAAGGGAAATGGAGCCGTTGGGAGAAGGACAATGCGGAATAGCCTGAACTTCAGTATGAAGGATGCTTTACCAATTGGTTAATGCTCGAGTATTGACAATTTTTTTGTGTGCATCTTTATTGTTCCAAGGGAGTCGTGAAGAAAGTGTTTTTCTTTGTCCTTTAATTCATTAGATAAAAAACGGTTGTAAAATCGCGTTTGTAATTTGATAAGGATGCATTTGAAAGTTATCTCTGTTCTCCGCACGGTGTACAGGCTTAGATGATATCTTATATTTTGTAGAGTGACTACCCGAACATGGTCTGCCTAAAGACATTTTGTCAAACTTTGCGAGCCATTGGGCTTTACTCATGAACGCCAAGGGACTTCATTCATGTTCAACTTGGCTCCCATGTAATGTGTTCGGAATTTCAACTGAGAACACAATTGACGACTTAGAAAAGCAAATCTGATTTGTGAGAGGAACTTAATTGTCATTATCGAGTAATTTTACTCTCTTGGCAAGTTACCAACATGTTTTGTATTGAACTTTTTTGTTTACCCATATGG

Ace file of the UniGene sp_v3.0_unigene7348

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phloem calmodulin-like-domain protein kinase PCPK1 n=3 Tax=fabids RepID=Q8LPV9_CUCMA	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Sma3	Chromosome chr3 scaffold_8, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00036285001;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G35310.1	CPK5, ATCPK5 calmodulin-domain protein kinase 5 chr4:16802436-16804628 FORWARD LENGTH=556	75%
RefSeq	Arabidopsis thaliana	NP_195257.1	calmodulin-domain protein kinase 5 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002328137.1	calcium dependent protein kinase 6 [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: your sequence is longer than subject: 577 - 529

Fln protein: MGNTCRGSFRNSYTQGYKEPSDRSSYRKNSNRCTSEHNTSRTDSRSDGSVNSVTVHLISNDFGKENLAAHVPPKKQVVLETLQSPKEDNMRRGGDTFSSYVLGHRTENLRDLYAMGRKLGQGQFGTTYLCTEIATGKEYACKSIPKRKLISKEDVEDVRREIQIMHHLSGHPNVVTIKGAYEDSLHVHIVMELCAGGELFDRIIERGHFSERKAAELTRIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDSSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLCKRYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLRGYIDFDSEPWPTISESAKDLIRKMLTSKPSERLTAHGVLCHPWICKDGVAPDQALDPAVLSRLKQFSAMNKLKKMALMVIAESLSEEEIAGLREMFKAMDTDNSGSITFDELTAGLKRYGSNMKESEIRAIMDAADVDNSGTIDYGEFIAATFHLNKLEREEHLFAAFSYFDKDGSGQITVDELQQACLEHNLTDVRIDEIIREVDQNNDGSIDYNEFVAMMRKGNGAVGRRTMRNSLNFSMKDALPIG*

Protein Length: 578

Fln nts: ATGGGGAAAAAGGCAAAAGTGAAAGGTAAAAGCAAAGCACCCACTTAGACCGGTAGACGAAATCTCGATAAAACAAGAGAAAAAGGAGAATTGGTGGAAGGTGGGACGAAAATGGAAAGATTTAAAGATCCCATCTCTTGCTGGCGATGTAATGCATGGCACTGAATCGAAGTAGATCGAAGTACTCATCATGATGGGTAATTACGGAAGAATCCTCGCAGTATCCCCCATCTGGGGATCATCCAGCATGCTTGTATTTAAATCTGTCTTCGGGCCGCCCTGCCACACGCTGAATTCCTGAACAAGGCACTGGAGGATTCTTACTCGGGTTTGACTTGCGTTGGATTTTCCACGGTATTGAACAAGGTTTGAAGGTTAAAGTATATTTACTGTGGAAGAAGAAATCTGTAGAATTCTTCGCTGAACGTGGCGGCCTTGGGGTATTGCTTTCTATGAGGGAATACTGTTACTTGTAAGGTGTTTCATTTTC_-_ATGGGCAATACATGCCGGGGTTCTTTTAGAAACAGTTACACTCAGGGCTACAAAGAGCCCTCTGATCGTTCTAGCTATAGGAAGAATAGTAATCGTTGTACTAGCGAACACAATACAAGCAGAACTGATTCTCGATCTGATGGTTCAGTGAATAGCGTGACAGTGCATTTAATCTCAAACGACTTTGGCAAGGAGAACCTCGCGGCACACGTTCCACCGAAGAAACAAGTAGTCCTGGAAACCCTGCAAAGCCCCAAAGAGGACAACATGAGACGGGGAGGCGATACATTTTCCTCTTATGTCTTAGGTCACCGCACCGAGAATCTGAGAGATCTCTACGCAATGGGGCGAAAACTGGGTCAGGGTCAATTTGGGACAACTTATCTGTGTACTGAAATTGCCACGGGAAAGGAATATGCTTGCAAGTCGATCCCCAAGCGGAAGCTGATTTCTAAGGAGGACGTGGAGGATGTGAGGCGGGAGATTCAGATCATGCATCATTTGTCCGGGCATCCCAATGTTGTGACTATCAAAGGGGCTTATGAGGATTCCTTGCATGTGCACATTGTAATGGAACTATGTGCTGGGGGTGAGCTCTTTGATCGGATTATTGAGAGAGGACATTTTAGTGAACGGAAAGCGGCTGAGTTGACACGGATTATTGTTGGGGTCGTTGAAGCTTGCCATTCGTTAGGCGTTATGCATCGAGACTTGAAGCCGGAGAATTTTTTGCTTGTTAACAAGGATGATGATTCATCATTGAAGGCAATTGACTTTGGGCTGTCTGTCTTTTTCAAACCTGGTCAGGTGTTCACTGATGTGGTTGGAAGCCCATACTATGTTGCCCCGGAAGTGTTATGCAAACGCTATGGTCCAGAAGCAGATGTGTGGACAGCCGGGGTCATCCTATACATCTTACTCAGCGGTGTTCCACCATTTTGGGCAGAAACACAACAGGGAATTTTCGATGCTGTTCTACGAGGTTATATTGATTTTGATTCAGAACCCTGGCCCACAATTTCTGAGAGTGCCAAGGATCTTATCAGAAAGATGCTTACTTCAAAACCATCTGAGCGCCTGACTGCTCATGGAGTTCTATGTCATCCGTGGATATGTAAAGATGGTGTCGCTCCAGATCAAGCTTTGGATCCAGCTGTATTATCTCGATTAAAGCAATTTTCTGCAATGAATAAATTGAAGAAGATGGCACTTATGGTAATAGCTGAAAGCTTGTCAGAGGAAGAGATTGCAGGTTTGAGAGAGATGTTTAAGGCAATGGACACTGATAATAGTGGTTCAATAACTTTTGATGAGTTGACGGCTGGCTTAAAAAGATATGGATCTAACATGAAGGAGTCTGAGATTCGTGCTATAATGGATGCAGCTGATGTAGACAACAGTGGTACAATTGATTATGGAGAATTCATTGCTGCAACTTTTCATTTGAACAAATTGGAGCGTGAGGAGCATTTATTTGCTGCATTTTCATACTTTGACAAGGATGGAAGTGGTCAAATTACGGTTGATGAGCTCCAGCAAGCATGCTTAGAGCATAATCTAACTGATGTTCGTATTGATGAGATTATTCGTGAAGTAGATCAAAACAATGATGGGAGTATAGATTACAATGAATTTGTCGCTATGATGCGGAAGGGAAATGGAGCCGTTGGGAGAAGGACAATGCGGAATAGCCTGAACTTCAGTATGAAGGATGCTTTACCAATTGGTTAA___TGCTCGAGTATTGACAATTTTTTTGTGTGCATCTTTATTGTTCCAAGGGAGTCGTGAAGAAAGTGTTTTTCTTTGTCCTTTAATTCATTAGATAAAAAACGGTTGTAAAATCGCGTTTGTAATTTGATAAGGATGCATTTGAAAGTTATCTCTGTTCTCCGCACGGTGTACAGGCTTAGATGATATCTTATATTTTGTAGAGTGACTACCCGAACATGGTCTGCCTAAAGACATTTTGTCAAACTTTGCGAGCCATTGGGCTTTACTCATGAACGCCAAGGGACTTCATTCATGTTCAACTTGGCTCCCATGTAATGTGTTCGGAATTTCAACTGAGAACACAATTGACGACTTAGAAAAGCAAATCTGATTTGTGAGAGGAACTTAATTGTCATTATCGAGTAATTTTACTCTCTTGGCAAGTTACCAACATGTTTTGTATTGAACTTTTTTGTTTACCCATATGG

Fln Alignment:

Contig7348___KEDNMRRGGDTFSSYVL-GHRTENLRDLYAMGRKLGQGQFGTTYLCTEIATGKEYACKSIPKRKLISKEDVEDVRREIQIMHHLSGHPNVVTIKGAYEDSLHVHIVMELCAGGELFDRIIERGHFSERKAAELTRIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDSSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLCKRYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLRGYIDFDSEPWPTISESAKDLIRKMLTSKPSERLTAHGVLCHPWICKDGVAPDQALDPAVLSRLKQFSAMNKLKKMALMVIAESLSEEEIAGLREMFKAMDTDNSGSITFDELTAGLKRYGSNMKESEIRAIMDAADVDNSGTIDYGEFIAATFHLNKLEREEHLFAAFSYFDKDGSGQITVDELQQACLEH---NLTDVRIDEIIREVDQNNDGSIDYNEFVAMMRKG
C0PQ38______________KRDNV--GGDVAKIPVLKGCLEQSVEERFLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDV-VNSIFNEVDADKDGRISYEEFASMMKTG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
90	87			12	0.992554
91	11			88	0.923564
95		11		77	0.968132
197	33		66		1.0
366	12		87		0.992554
394			85	14	0.993533
502	85		14		0.993533
1016	88		11		0.923564
1089	10			90	0.90298
1092	90		10		0.90298
1093			10	90	0.90298
1143		88		11	0.923564
1144	88		11		0.923564
1145		88	11		0.923564
1199		12	87		0.992554
1284		11		88	0.923564
1285		88		11	0.923564
2467	2			89	0.999999
2488	4	95			0.997494
2491	95		4		0.997494
2579	94	1			0.924724
2667	88		11		0.991528

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain