SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7347

Length: 1670 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7347

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-carotene hydroxylase n=2 Tax=Coffea RepID=Q0H8Z8_COFAR	-	-	61%
FL-Next	sp=Beta-carotene 3-hydroxylase 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid hydroxylase	IPR006694	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25700.1	BETA-OHASE 1, B1, chy1, BCH1 beta-hydroxylase 1 chr4:13094142-13095866 REVERSE LENGTH=310	65%
RefSeq	Arabidopsis thaliana	NP_194300.1	beta-carotene hydroxylase [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002298016.1	predicted protein, partial [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SZZ8

Fln msg:

Fln protein: MGLRSVSSPYGLSKCDSILSPPLSSTKPAAAPLGRAVYCYYLALARASSVNRNGFRSARVFSEFRGRRKVLSLVFASTKKSQQLEMKSESIEDDASATEFADSLSSRVDEIANKRERDKRAATRKSERHAYFFAAVASSVGITSMTAAAVYYRFVWQMQGAQIPYMEIFGTFALAVGATVGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAFPAIALMAYGFFNKGFVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHADKFNGVPYGLFLGPKELEEVGGHDELEKLFNSKMKGLQKH*

Protein Length: 336

Fln nts: CGTCGTGACCTTGGGTGTCAGTGGCTCTCAGAATTTTGGCAAATTGATCATCGAACAAGCGGCGACGAGAGAGCAGGTCTTAGGTTCGAATCCGGGAATAGCACAAAGTTCACCAGCAAGGTAGTAGTGCAGATAA_-_ATGGGGCTGAGGAGTGTTTCATCTCCATACGGATTGTCAAAGTGCGATTCGATCCTCTCACCTCCGCTTTCATCAACCAAACCAGCTGCAGCACCACTGGGCAGGGCGGTTTATTGTTATTATCTCGCGCTTGCCAGAGCTTCTTCAGTTAACAGAAATGGGTTCCGTTCTGCCCGCGTTTTTTCTGAATTTCGTGGGAGAAGGAAGGTGCTGTCTCTAGTCTTTGCGTCGACTAAAAAATCCCAACAGCTAGAGATGAAATCAGAATCCATTGAAGATGATGCTTCTGCTACTGAATTTGCAGACTCATTAAGCAGTAGAGTTGATGAGATTGCGAATAAAAGGGAACGGGATAAAAGAGCTGCGACGAGGAAGTCCGAACGCCATGCCTACTTCTTTGCTGCCGTTGCCTCCAGTGTTGGTATTACTAGTATGACTGCCGCTGCTGTTTACTACCGATTTGTTTGGCAGATGCAGGGTGCACAGATTCCCTACATGGAGATCTTTGGAACTTTTGCATTAGCAGTGGGAGCCACGGTTGGAATGGAATTTTGGGCACGTTGGGCTCACCGAGCTCTATGGCACGCCTCCTTGTGGCACATGCATGAGTCTCATCACCGGCCAAGGGAGGGACCTTTTGAGTTGAATGATGTGTTCGCAATCATCAATGCTTTTCCTGCCATTGCACTAATGGCTTATGGATTCTTTAACAAAGGCTTTGTGCCAGGTCTTTGCTTTGGTGCTGGGCTTGGTATCACCGTTTTTGGGATGGCATATATGTTTGTCCATGATGGGCTTGTTCATCGCCGCTTTCCTGTTGGACCTATTGCTGATGTTCCATATCTTCTTAAAGTAGCTGCTGCACATCAGCTTCATCATGCAGATAAGTTTAATGGTGTGCCTTATGGTCTTTTCCTTGGACCAAAAGAACTGGAAGAGGTTGGGGGCCATGACGAGCTAGAAAAATTGTTTAATAGTAAGATGAAGGGCCTCCAAAAGCACTAG___TGAAGGCTTTGAATTTCCTGCTTTGGTGTTCCCATTTTATATTTTCGTACATCTTCATCTTCCTTAAGAGGCAGAGCGGGTCGCAATTGCACAAAGCAGATTAGCTTATGGGTCATCGGTGGACTTGCCAATTATATTTATTTGATTGGCACACGGTCATATAACCCAAGGGAATTGGCTGTGGCTGTGAAGATGATGGACTATGCCAATGTGAAGATGATGCACTATGCCAATATGGAGCACATGAGCTCTGATATTCATTTTAGGATGGGGGCCTTATGCGTTAGCATGTATGCATGGCTTCTCGAGATTGTTCTGGTTAAGGTTTTCAAGAATCTTTTGTTCAGGCATTAAGTTCAAACCCTGGATATGTCAAATATAGTTTCTATAAAAGTAGTGAATTTGCTAGATTGAATTTTTTGCCAATATGATTATGTGTTTATGTTGGTGGGAGGATTTCGCCAAACAGCTTATTGTTTGATGAATATTTTATGAGAAACTGATCGTCTAGATTCATTTTATTTTTTTG

Fln Alignment:

Contig7347___RRKVLSLVFASTKKSQQLEMKSESIEDDASATEFADSLSSRVDEIANKRERDKRAATRKSERHAYFFAAVASSVGITSMTAAAVYYRFVWQMQGAQIPYMEIFGTFALAVGATVGMEFXXXXXXXXXXXXSLWHMHESHHRPREGPFELNDVFAIINAFPAIALMAYGFFNKGFVPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIADVPYLLKVAAAHQLHHADKFNGVPYGLFLGPKELEEVGGHDELEKLFNSKMKGLQK
Q9SZZ8______________RFKRFSVCYVVEERRQNSPIENDERPESTSSTNAIDAEYLAL-RLAEKLER------KKSERSTYLIAAMLSSFGITSMAVMAVYYRFSWQMEGGEISMLEMFGTFALSVGAAVGMEFWARWAHRALWHASLWNMHESHHKPREGPFELNDVFAIVNAGPAIGLLSYGFFNKGLVPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIADVPYLRKVAAAHQLHHTDKFNGVPYGLFLGPKELEEVGGNEELDKEISRRIKSYKK

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
395	83	16			0.994512
397	16		83		0.994512
460	90		10		0.90298
478		10		90	0.90298
484	10		90		0.90298
485	10		90		0.90298
517		90		10	0.90298
564		10		90	0.90298
748	10		90		0.90298
776	10			90	0.90298
777	10			90	0.90298
788			90	10	0.90298
1071		10		90	0.90298
1418	10		90		0.90298
1437	94		5		0.998894
1483		4		87	0.999414
1505	77		22		1.0
1565		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain